Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00314 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99639 * 3 2 1 5 5 H 1.48499 * 109.46952 * 29.99625 * 3 2 1 6 6 H 1.48501 * 109.47109 * 149.99581 * 3 2 1 7 7 C 1.38719 * 119.99525 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00043 * 0.02562 * 7 2 1 9 9 O 1.34786 * 119.99875 * 180.02562 * 7 2 1 10 10 C 1.35573 * 117.00002 * 185.29614 * 9 7 2 11 11 C 1.39171 * 119.89831 * 5.78120 * 10 9 7 12 12 C 1.37603 * 120.10223 * 179.74916 * 11 10 9 13 13 C 1.40022 * 119.89219 * 0.25161 * 12 11 10 14 14 C 1.46967 * 120.09931 * 179.97438 * 13 12 11 15 15 C 1.35030 * 119.99654 * 43.46199 * 14 13 12 16 16 C 1.46253 * 119.99878 * 11.38412 * 15 14 13 17 17 O 1.21720 * 120.00182 * 6.79903 * 16 15 14 18 18 N 1.34773 * 120.00041 * 186.79164 * 16 15 14 19 19 C 1.47430 * 125.64850 * 359.70057 * 18 16 15 20 20 C 1.55126 * 104.72523 * 155.81375 * 19 18 16 21 21 C 1.55157 * 101.48701 * 37.29355 * 20 19 18 22 22 H 1.08999 * 110.71958 * 82.69156 * 21 20 19 23 23 C 1.50697 * 110.71805 * 205.97186 * 21 20 19 24 24 N 1.34783 * 119.99742 * 174.97483 * 23 21 20 25 25 O 1.21272 * 120.00334 * 354.97247 * 23 21 20 26 26 C 1.47018 * 125.65308 * 180.02562 * 18 16 15 27 27 C 1.40024 * 119.80313 * 0.02562 * 13 12 11 28 28 C 1.37596 * 119.89784 * 0.02562 * 27 13 12 29 29 H 0.97004 * 119.99847 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.95179 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.05124 * 180.27417 * 12 11 10 32 32 H 1.07995 * 120.00217 * 223.45947 * 14 13 12 33 33 H 1.07991 * 119.99803 * 191.38391 * 15 14 13 34 34 H 1.09005 * 110.36164 * 274.74555 * 19 18 16 35 35 H 1.09000 * 110.36510 * 37.06134 * 19 18 16 36 36 H 1.09001 * 111.19045 * 279.18566 * 20 19 18 37 37 H 1.09003 * 110.94009 * 155.29126 * 20 19 18 38 38 H 0.96999 * 119.99761 * 359.97438 * 24 23 21 39 39 H 0.96997 * 119.99675 * 179.97438 * 24 23 21 40 40 H 1.09007 * 109.88170 * 300.44578 * 26 18 16 41 41 H 1.09003 * 109.88548 * 61.45216 * 26 18 16 42 42 H 1.08002 * 120.05380 * 180.02562 * 27 13 12 43 43 H 1.07995 * 119.95254 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4685 -2.1367 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4044 -0.1099 11 6 3.2173 -3.5512 -0.3383 12 6 3.8381 -4.7735 -0.4568 13 6 5.2307 -4.8630 -0.3420 14 6 5.8984 -6.1662 -0.4672 15 6 5.5256 -7.0250 -1.4402 16 6 4.6432 -6.5734 -2.5155 17 8 4.3446 -5.3967 -2.6040 18 7 4.1607 -7.4600 -3.4086 19 6 4.4452 -8.9065 -3.4228 20 6 3.2420 -9.5376 -4.1715 21 6 2.9618 -8.4697 -5.2616 22 1 3.6278 -8.6046 -6.1139 23 6 1.5198 -8.5177 -5.6968 24 7 1.0472 -7.6017 -6.5652 25 8 0.7847 -9.3805 -5.2657 26 6 3.2690 -7.1439 -4.5339 27 6 5.9853 -3.7072 -0.1064 28 6 5.3558 -2.4894 0.0117 29 1 -0.4850 0.8401 -0.0004 30 1 2.1433 -3.4812 -0.4272 31 1 3.2521 -5.6624 -0.6385 32 1 6.6873 -6.4370 0.2189 33 1 5.8790 -8.0454 -1.4243 34 1 5.3742 -9.1051 -3.9574 35 1 4.5025 -9.2919 -2.4048 36 1 2.3839 -9.6550 -3.5097 37 1 3.5195 -10.4912 -4.6208 38 1 1.6351 -6.9114 -6.9097 39 1 0.1191 -7.6328 -6.8456 40 1 2.3444 -6.7027 -4.1616 41 1 3.7627 -6.4503 -5.2146 42 1 7.0597 -3.7714 -0.0175 43 1 5.9368 -1.5975 0.1939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491520366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -39.418796 kcal Electronic energy + Delta-G solvation = -27390.818655 eV Core-core repulsion = 23402.704462 eV Total energy + Delta-G solvation = -3988.114193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63244 -39.57830 -38.88117 -37.41529 -36.30237 -34.04681 -33.13608 -32.32824 -31.82001 -30.16606 -29.46997 -28.30053 -25.53891 -24.76744 -22.78144 -22.66216 -21.71121 -20.60666 -20.19784 -18.59210 -17.97176 -17.83734 -17.50121 -17.06189 -16.85498 -16.17591 -15.38559 -15.17017 -14.73764 -14.30497 -14.20263 -14.13726 -13.89595 -13.72012 -13.54162 -13.34429 -13.17377 -12.75166 -12.64124 -12.32587 -12.26310 -12.16599 -11.98129 -11.72466 -11.39513 -11.26822 -10.94688 -10.76903 -10.68422 -10.31806 -10.14106 -10.02516 -9.58667 -9.43182 -9.26431 -8.76560 -8.70235 -7.97756 -7.00893 -6.42167 -4.05809 1.15614 2.24391 2.32224 2.59994 2.90200 3.22373 3.22906 3.26466 3.41008 3.54568 3.96756 4.19774 4.23983 4.50781 4.62216 4.81966 4.85634 4.90198 4.92679 4.97090 5.11331 5.14810 5.30333 5.45009 5.49993 5.53617 5.59505 5.67301 5.74570 5.84336 6.07655 6.18428 6.26421 6.38914 6.43293 6.57250 6.63695 6.91964 6.96080 7.16205 7.29615 7.41679 7.53550 7.66842 7.84461 7.90350 8.06207 8.41066 8.92905 9.56936 10.65270 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.003049 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.424331 B = 9180.676379 C =10990.311731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.212 6.212 10 C 0.177 3.823 11 C -0.231 4.231 12 C 0.014 3.986 13 C -0.183 4.183 14 C 0.026 3.974 15 C -0.259 4.259 16 C 0.556 3.444 17 O -0.508 6.508 18 N -0.623 5.623 19 C 0.100 3.900 20 C -0.113 4.113 21 C -0.127 4.127 22 H 0.113 0.887 23 C 0.530 3.470 24 N -0.853 5.853 25 O -0.539 6.539 26 C 0.121 3.879 27 C -0.047 4.047 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.404 0.596 39 H 0.403 0.597 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -18.499 -10.421 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.462 4.462 8 H 0.124 0.876 9 O -0.116 6.116 10 C 0.124 3.876 11 C -0.250 4.250 12 C -0.005 4.005 13 C -0.183 4.183 14 C 0.006 3.994 15 C -0.280 4.280 16 C 0.349 3.651 17 O -0.384 6.384 18 N -0.360 5.360 19 C -0.023 4.023 20 C -0.151 4.151 21 C -0.149 4.149 22 H 0.131 0.869 23 C 0.314 3.686 24 N -0.416 5.416 25 O -0.415 6.415 26 C -0.003 4.003 27 C -0.065 4.065 28 C -0.229 4.229 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.232 0.768 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.780 -18.025 -9.996 22.814 hybrid contribution -0.007 0.853 -0.615 1.052 sum 9.774 -17.172 -10.611 22.428 Atomic orbital electron populations 1.69631 1.05633 1.28542 1.47608 1.24495 0.95036 0.98870 0.95624 0.86175 0.80380 0.81333 0.79001 1.19870 1.20734 1.18256 1.20828 0.76907 0.96697 1.51806 0.87556 1.83515 1.22672 1.26178 1.79278 1.19295 0.91592 0.85280 0.91441 1.21072 1.00936 0.92185 1.10829 1.20617 0.92746 0.96242 0.90856 1.18368 0.93400 0.92452 1.14127 1.22362 0.92681 0.91788 0.92545 1.22591 1.06886 1.00596 0.97953 1.18222 0.80178 0.84972 0.81742 1.91009 1.58136 1.15974 1.73255 1.48434 1.49643 1.08321 1.29608 1.22398 0.97742 0.80590 1.01556 1.22746 0.98746 0.97140 0.96492 1.22437 0.94256 0.97839 1.00374 0.86918 1.20260 0.89524 0.80831 0.77964 1.43898 1.16187 1.33118 1.48426 1.90759 1.59121 1.36333 1.55267 1.21695 0.95211 0.94650 0.88753 1.20627 0.97867 0.91340 0.96673 1.19994 0.91794 0.97922 1.13171 0.91006 0.85232 0.88304 0.85755 0.85936 0.91234 0.89977 0.89077 0.89299 0.76766 0.76577 0.90976 0.90713 0.86952 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.48 0.77 -24.89 16 2 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 21.99 28.62 -169.99 -4.86 17.12 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.21 9.90 30.91 0.31 -10.90 16 8 H 0.11 3.17 5.50 -52.49 -0.29 2.88 16 9 O -0.21 -5.80 8.57 0.72 0.01 -5.79 16 10 C 0.18 4.31 6.66 -38.88 -0.26 4.06 16 11 C -0.23 -5.41 9.11 -39.47 -0.36 -5.77 16 12 C 0.01 0.28 6.60 -39.14 -0.26 0.02 16 13 C -0.18 -3.26 4.54 -105.02 -0.48 -3.74 16 14 C 0.03 0.35 9.80 -37.19 -0.36 -0.02 16 15 C -0.26 -3.22 9.30 -37.50 -0.35 -3.57 16 16 C 0.56 8.31 6.80 -13.04 -0.09 8.22 16 17 O -0.51 -9.91 12.50 5.17 0.06 -9.85 16 18 N -0.62 -7.20 3.32 -172.07 -0.57 -7.77 16 19 C 0.10 0.77 6.50 -2.41 -0.02 0.75 16 20 C -0.11 -0.86 6.15 -24.46 -0.15 -1.01 16 21 C -0.13 -0.96 3.34 -89.94 -0.30 -1.26 16 22 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 23 C 0.53 5.04 7.29 -10.98 -0.08 4.96 16 24 N -0.85 -5.50 8.82 31.22 0.28 -5.22 16 25 O -0.54 -7.34 16.60 5.56 0.09 -7.24 16 26 C 0.12 1.24 6.40 -3.07 -0.02 1.22 16 27 C -0.05 -0.84 9.78 -39.15 -0.38 -1.22 16 28 C -0.21 -4.37 9.97 -39.47 -0.39 -4.76 16 29 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.13 3.21 5.69 -52.49 -0.30 2.91 16 31 H 0.10 1.91 7.01 -52.49 -0.37 1.54 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.09 6.96 -52.49 -0.37 0.72 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.56 7.23 -51.93 -0.38 0.19 16 36 H 0.09 0.89 7.49 -51.93 -0.39 0.50 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 1.63 8.82 -40.82 -0.36 1.27 16 39 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 40 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -36.28 361.83 -7.37 -43.65 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.31 Total: 5.86 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.29 Total: -11.32 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.48 Total: -37.89 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.16 Total: -22.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.28 -7.37 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491520366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.231 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds