Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48506 * 109.46917 * 90.00422 * 3 2 1 5 5 H 1.48505 * 109.47313 * 210.00222 * 3 2 1 6 6 H 1.48503 * 109.47383 * 330.00414 * 3 2 1 7 7 C 1.38944 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99711 * 203.99806 * 7 2 1 9 9 N 1.37090 * 120.00539 * 23.99807 * 7 2 1 10 10 C 1.34780 * 120.00337 * 43.93193 * 9 7 2 11 11 O 1.21296 * 119.99348 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00264 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.46870 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47002 * 180.02562 * 13 12 10 15 15 S 1.81404 * 109.47314 * 180.02562 * 14 13 12 16 16 O 1.42105 * 110.53755 * 291.62145 * 15 14 13 17 17 O 1.42102 * 110.54535 * 68.36757 * 15 14 13 18 18 N 1.65597 * 104.45181 * 180.02562 * 15 14 13 19 19 C 1.47021 * 125.64452 * 269.69274 * 18 15 14 20 20 C 1.54318 * 107.27571 * 180.96987 * 19 18 15 21 21 C 1.55154 * 102.86503 * 22.52071 * 20 19 18 22 22 C 1.47423 * 125.65356 * 89.99408 * 18 15 14 23 23 C 1.46508 * 120.00332 * 223.93912 * 9 7 2 24 24 C 1.52999 * 117.49303 * 9.97659 * 23 9 7 25 25 C 1.52998 * 117.49560 * 301.31769 * 23 9 7 26 26 H 0.96999 * 119.99845 * 185.19799 * 1 2 3 27 27 H 1.08999 * 109.47058 * 300.00105 * 12 10 9 28 28 H 1.08988 * 109.46977 * 60.00415 * 12 10 9 29 29 H 1.09006 * 109.47169 * 299.99978 * 13 12 10 30 30 H 1.09002 * 109.47565 * 59.99967 * 13 12 10 31 31 H 1.08999 * 109.47261 * 299.99257 * 14 13 12 32 32 H 1.09002 * 109.47661 * 59.99732 * 14 13 12 33 33 H 1.09009 * 109.88177 * 300.50796 * 19 18 15 34 34 H 1.08997 * 109.89084 * 61.67497 * 19 18 15 35 35 H 1.08997 * 110.92057 * 264.10815 * 20 19 18 36 36 H 1.08998 * 110.58969 * 140.78509 * 20 19 18 37 37 H 1.08995 * 111.00456 * 206.23361 * 21 20 19 38 38 H 1.08996 * 111.00491 * 82.37823 * 21 20 19 39 39 H 1.09000 * 110.36836 * 274.67945 * 22 18 15 40 40 H 1.09002 * 110.36177 * 36.89062 * 22 18 15 41 41 H 1.08994 * 115.55196 * 155.64968 * 23 9 7 42 42 H 1.08992 * 117.50370 * 0.02562 * 24 23 9 43 43 H 1.09001 * 117.49773 * 145.02920 * 24 23 9 44 44 H 1.08993 * 117.50210 * 214.97707 * 25 23 9 45 45 H 1.08999 * 117.50128 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 1.4001 5 1 3.5457 1.4403 -0.7001 6 1 1.4455 2.6527 -0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0189 -1.2439 0.3799 9 7 1.4123 -2.3391 -0.4839 10 6 0.7078 -2.2940 -1.6320 11 8 0.6020 -1.2484 -2.2378 12 6 0.0516 -3.5424 -2.1630 13 6 -0.6779 -3.2192 -3.4684 14 6 -1.3447 -4.4864 -4.0072 15 16 -2.2091 -4.1035 -5.5554 16 8 -3.3277 -3.2630 -5.3072 17 8 -1.2776 -3.7985 -6.5844 18 7 -2.8776 -5.5446 -6.0228 19 6 -2.2362 -6.5466 -6.8866 20 6 -3.2389 -7.7056 -7.0669 21 6 -4.6037 -7.0316 -6.7659 22 6 -4.2170 -6.0326 -5.6469 23 6 1.5405 -3.6020 0.2476 24 6 2.1466 -3.5468 1.6514 25 6 2.9531 -4.1367 0.4917 26 1 -0.4850 -0.8366 0.0761 27 1 0.8117 -4.3009 -2.3501 28 1 -0.6629 -3.9170 -1.4302 29 1 -1.4380 -2.4604 -3.2817 30 1 0.0369 -2.8447 -4.2012 31 1 -0.5850 -5.2454 -4.1940 32 1 -2.0597 -4.8606 -3.2745 33 1 -1.9996 -6.1046 -7.8546 34 1 -1.3265 -6.9163 -6.4134 35 1 -3.0395 -8.5071 -6.3557 36 1 -3.2113 -8.0807 -8.0900 37 1 -5.3285 -7.7612 -6.4050 38 1 -4.9827 -6.5078 -7.6434 39 1 -4.1793 -6.5392 -4.6825 40 1 -4.9262 -5.2056 -5.6128 41 1 0.7503 -4.3311 0.0689 42 1 2.4496 -2.5710 2.0308 43 1 1.7554 -4.2400 2.3961 44 1 3.0921 -5.2176 0.4740 45 1 3.7870 -3.5492 0.1077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520108065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = -75.739205 kcal Electronic energy + Delta-G solvation = -26716.435923 eV Core-core repulsion = 22862.190709 eV Total energy + Delta-G solvation = -3854.245213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -38.93795 -38.62421 -37.13848 -36.42899 -35.95805 -34.40018 -32.87432 -31.25623 -30.89345 -29.31992 -28.15933 -24.64298 -23.00941 -22.08094 -21.75721 -21.57004 -21.24412 -19.25355 -19.03691 -17.84065 -17.08312 -16.72342 -16.45506 -16.11149 -15.69514 -15.15071 -14.68941 -14.18723 -14.12954 -13.96364 -13.71842 -13.64530 -13.53763 -13.11217 -12.99243 -12.53470 -12.29240 -12.14809 -12.10654 -12.05843 -11.80321 -11.67622 -11.49793 -11.29694 -11.21804 -11.09006 -10.98778 -10.75209 -10.61970 -10.57681 -10.28099 -10.08020 -9.89368 -9.74438 -9.24259 -8.67070 -8.12818 -7.35016 -6.40420 -3.90680 0.13270 2.53776 3.41726 3.53839 3.67521 3.75947 3.86268 3.90264 4.14303 4.28126 4.37733 4.54153 4.56749 4.64820 4.79275 4.81434 4.92520 5.10401 5.19123 5.22205 5.29953 5.37435 5.43285 5.46467 5.50174 5.53224 5.54947 5.58814 5.65489 5.69380 5.75097 5.84093 5.88703 5.98133 6.11693 6.11893 6.27609 6.33787 6.38452 6.63332 6.85002 7.87940 8.38007 8.77970 9.15458 9.53963 10.05525 10.88850 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.002885 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.099534 B = 9703.383978 C =10593.167065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.042 3.958 3 Si 1.077 2.923 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.432 4.432 8 H 0.070 0.930 9 N -0.431 5.431 10 C 0.458 3.542 11 O -0.538 6.538 12 C -0.123 4.123 13 C -0.094 4.094 14 C -0.622 4.622 15 S 2.623 3.377 16 O -0.949 6.949 17 O -0.951 6.951 18 N -1.018 6.018 19 C 0.118 3.882 20 C -0.129 4.129 21 C -0.130 4.130 22 C 0.112 3.888 23 C 0.066 3.934 24 C -0.174 4.174 25 C -0.202 4.202 26 H 0.270 0.730 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -19.412 -8.620 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.172 4.172 3 Si 0.904 3.096 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.088 0.912 9 N -0.152 5.152 10 C 0.246 3.754 11 O -0.416 6.416 12 C -0.165 4.165 13 C -0.133 4.133 14 C -0.752 4.752 15 S 2.719 3.281 16 O -0.940 6.940 17 O -0.941 6.941 18 N -0.856 5.856 19 C -0.008 4.008 20 C -0.168 4.168 21 C -0.169 4.169 22 C -0.013 4.013 23 C -0.040 4.040 24 C -0.212 4.212 25 C -0.241 4.241 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.813 -16.325 -9.468 20.064 hybrid contribution 0.460 -2.507 0.820 2.678 sum -6.353 -18.833 -8.648 21.675 Atomic orbital electron populations 1.70567 1.07545 1.30929 1.38430 1.26188 0.95939 1.02288 0.92738 0.83419 0.75109 0.74884 0.76166 1.21756 1.21221 1.20567 1.19742 0.99232 0.87102 1.49750 0.91241 1.43015 1.48101 1.06364 1.17754 1.20114 0.84051 0.89601 0.81629 1.90623 1.61351 1.31718 1.57951 1.21534 0.99818 0.98636 0.96522 1.21029 1.00707 0.92952 0.98608 1.30649 1.13758 1.08787 1.21991 1.04735 0.74594 0.72153 0.76649 1.93594 1.50392 1.63313 1.86680 1.93587 1.65142 1.81792 1.53584 1.58805 1.25814 1.37872 1.63101 1.21722 0.95742 0.88628 0.94683 1.22638 0.94493 0.97082 1.02604 1.22762 0.97184 0.98057 0.98862 1.22070 0.83242 0.98078 0.97911 1.21801 0.94831 0.90809 0.96538 1.23098 1.04151 1.02909 0.91063 1.23253 0.96939 0.99240 1.04651 0.91957 0.90199 0.90447 0.89601 0.89752 0.85233 0.85175 0.90893 0.91666 0.90558 0.90141 0.89943 0.90521 0.91546 0.89683 0.87855 0.87346 0.89810 0.89789 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.80 12.44 55.50 0.69 -25.11 16 2 C 0.04 1.20 4.19 -17.47 -0.07 1.12 16 3 Si 1.08 26.06 29.98 -169.99 -5.10 20.96 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.43 -11.91 7.63 -14.94 -0.11 -12.03 16 8 H 0.07 1.89 7.60 -52.48 -0.40 1.49 16 9 N -0.43 -10.68 2.60 -107.73 -0.28 -10.96 16 10 C 0.46 11.39 6.47 -10.98 -0.07 11.32 16 11 O -0.54 -15.78 13.93 5.54 0.08 -15.71 16 12 C -0.12 -2.23 4.23 -27.88 -0.12 -2.35 16 13 C -0.09 -1.60 4.51 -26.73 -0.12 -1.72 16 14 C -0.62 -7.35 6.18 37.16 0.23 -7.12 16 15 S 2.62 35.24 5.65 -107.50 -0.61 34.64 16 16 O -0.95 -15.91 17.27 -57.54 -0.99 -16.90 16 17 O -0.95 -15.70 17.60 -57.54 -1.01 -16.72 16 18 N -1.02 -10.14 3.62 -111.42 -0.40 -10.55 16 19 C 0.12 0.94 6.89 -3.07 -0.02 0.92 16 20 C -0.13 -0.71 6.95 -24.90 -0.17 -0.88 16 21 C -0.13 -0.76 7.08 -24.58 -0.17 -0.94 16 22 C 0.11 0.90 7.07 -2.53 -0.02 0.88 16 23 C 0.07 1.29 6.02 -67.93 -0.41 0.88 16 24 C -0.17 -3.12 9.82 -26.69 -0.26 -3.38 16 25 C -0.20 -3.43 10.25 -26.69 -0.27 -3.70 16 26 H 0.27 8.28 7.48 -40.82 -0.31 7.98 16 27 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 28 H 0.08 1.24 7.58 -51.94 -0.39 0.85 16 29 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 30 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 31 H 0.13 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.13 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 41 H 0.10 1.72 6.76 -51.93 -0.35 1.37 16 42 H 0.11 2.21 6.93 -51.93 -0.36 1.85 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -38.29 377.73 -10.87 -49.16 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.34 Total: 2.49 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.60 Total: -16.99 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.01 Total: -46.62 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.93 Total: -49.32 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.10 Total: 20.96 kcal Atomic # 16 Polarization: 35.24 SS G_CDS: -0.61 Total: 34.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.29 -10.87 -49.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520108065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.583 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds