Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81391 * 109.47327 * 2 1 4 4 O 1.42105 * 110.54369 * 68.37719 * 3 2 1 5 5 O 1.42104 * 110.54463 * 291.62663 * 3 2 1 6 6 N 1.65606 * 104.45181 * 180.02562 * 3 2 1 7 7 C 1.46499 * 119.99459 * 65.00044 * 6 3 2 8 8 C 1.50706 * 109.46827 * 165.00639 * 7 6 3 9 9 O 1.21293 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.39471 * 119.99891 * 179.97438 * 10 8 7 12 12 C 1.36110 * 126.21626 * 0.14378 * 11 10 8 13 13 C 1.39762 * 107.82869 * 180.26709 * 12 11 10 14 14 C 1.50694 * 125.84077 * 179.72419 * 13 12 11 15 15 N 1.30855 * 108.31847 * 359.75600 * 13 12 11 16 16 N 1.35266 * 126.21450 * 180.02562 * 11 10 8 17 17 C 1.46491 * 126.04623 * 359.97438 * 16 11 10 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 11 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 H 1.09000 * 109.46991 * 59.99233 * 1 2 3 27 27 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46552 * 299.99668 * 1 2 3 29 29 H 1.09003 * 109.46552 * 240.00332 * 2 1 3 30 30 H 1.09000 * 109.46991 * 120.00767 * 2 1 3 31 31 H 0.96996 * 119.99925 * 245.00378 * 6 3 2 32 32 H 1.08994 * 109.47692 * 45.00228 * 7 6 3 33 33 H 1.09002 * 109.47172 * 284.99700 * 7 6 3 34 34 H 0.97004 * 120.00013 * 359.97438 * 10 8 7 35 35 H 1.07999 * 126.09101 * 0.05355 * 12 11 10 36 36 H 1.09003 * 109.47188 * 270.01578 * 14 13 12 37 37 H 1.08998 * 109.47119 * 30.01737 * 14 13 12 38 38 H 1.09003 * 109.47108 * 150.01312 * 14 13 12 39 39 H 1.09004 * 109.47166 * 149.71543 * 17 16 11 40 40 H 1.08994 * 109.47507 * 29.71250 * 17 16 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7101 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1510 8 6 5.9393 1.2787 -1.0793 9 8 6.3760 1.9361 -0.1583 10 7 6.7711 0.8277 -2.0392 11 6 8.1339 1.1165 -1.9732 12 6 8.7572 1.8363 -1.0005 13 6 10.1175 1.8940 -1.3161 14 6 11.1806 2.5978 -0.5127 15 7 10.3099 1.2331 -2.4290 16 7 9.0767 0.7303 -2.8629 17 6 8.8476 -0.0679 -4.0697 18 6 8.9925 -1.5310 -3.7392 19 1 9.2310 -1.8359 -2.7309 20 6 8.8145 -2.4809 -4.7227 21 7 8.5237 -2.1097 -5.9504 22 14 8.9865 -4.2948 -4.3112 23 1 9.3147 -4.4468 -2.8710 24 1 7.7083 -4.9921 -4.6035 25 1 10.0727 -4.8878 -5.1321 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 4.2989 1.8762 0.7604 32 1 4.0529 1.3770 -2.0723 33 1 4.3228 -0.1133 -1.1373 34 1 6.4218 0.3023 -2.7761 35 1 8.2843 2.2860 -0.1400 36 1 11.2752 3.6273 -0.8581 37 1 10.9029 2.5921 0.5413 38 1 12.1329 2.0828 -0.6402 39 1 9.5779 0.2067 -4.8310 40 1 7.8423 0.1219 -4.4454 41 1 8.3989 -2.7780 -6.6424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533919613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -32.012445 kcal Electronic energy + Delta-G solvation = -25915.752111 eV Core-core repulsion = 21959.862689 eV Total energy + Delta-G solvation = -3955.889422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98354 -39.43996 -37.39822 -36.25514 -35.23111 -34.76844 -33.84570 -33.56964 -32.14343 -29.43471 -28.76533 -26.91382 -26.08208 -24.48099 -22.98136 -21.72155 -19.90309 -19.84790 -19.37278 -18.17960 -17.33642 -16.90273 -16.66752 -16.50069 -16.12745 -15.81084 -15.51545 -14.86139 -14.63490 -14.41868 -14.18882 -13.74680 -13.71811 -13.24772 -12.93384 -12.91179 -12.82227 -12.56438 -12.40667 -12.36778 -12.28952 -12.10013 -11.99440 -11.82920 -11.63734 -11.13081 -11.01723 -10.97315 -10.51128 -10.41328 -10.14385 -9.89290 -9.85444 -9.63139 -8.79026 -7.99683 -7.53749 -6.39824 -4.48566 -0.11062 2.06813 2.24953 2.74390 2.98951 3.09357 3.19175 3.24319 3.44421 3.51337 3.68546 3.83814 4.14828 4.18241 4.31556 4.39924 4.74121 4.81285 4.91445 4.93615 5.10256 5.21461 5.26834 5.30277 5.49279 5.57908 5.99055 6.08133 6.10398 6.18314 6.32329 6.57136 6.68122 6.76654 6.97777 7.41021 7.48937 7.54318 7.72665 7.78208 8.12825 8.54905 8.64024 9.19343 10.67287 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.003407 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.509617 B = 8217.067935 C =10299.325724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.617 3.383 4 O -0.953 6.953 5 O -0.953 6.953 6 N -1.108 6.108 7 C 0.100 3.900 8 C 0.519 3.481 9 O -0.507 6.507 10 N -0.635 5.635 11 C 0.299 3.701 12 C -0.293 4.293 13 C 0.051 3.949 14 C -0.063 4.063 15 N -0.283 5.283 16 N -0.343 5.343 17 C 0.255 3.745 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.889 5.889 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.279 1.279 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.429 0.571 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.419 0.581 35 H 0.162 0.838 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 3.282 10.130 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.708 3.292 4 O -0.943 6.943 5 O -0.942 6.942 6 N -0.871 5.871 7 C -0.030 4.030 8 C 0.303 3.697 9 O -0.380 6.380 10 N -0.283 5.283 11 C 0.076 3.924 12 C -0.325 4.325 13 C -0.114 4.114 14 C -0.121 4.121 15 N -0.108 5.108 16 N -0.128 5.128 17 C 0.138 3.862 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.267 0.733 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.256 0.744 35 H 0.179 0.821 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.025 3.957 9.454 16.574 hybrid contribution -0.298 -1.939 0.343 1.991 sum -13.323 2.019 9.797 16.660 Atomic orbital electron populations 1.21508 0.90349 1.05205 1.03546 1.30529 1.07443 1.26346 1.12034 1.04915 0.72606 0.77228 0.74426 1.93624 1.82728 1.72890 1.45049 1.93619 1.83125 1.71947 1.45548 1.55399 1.25965 1.78049 1.27672 1.21028 0.90785 1.00034 0.91183 1.20258 0.87876 0.79711 0.81824 1.90646 1.76451 1.37656 1.33252 1.42637 1.04573 1.53586 1.27488 1.17883 0.81230 0.99440 0.93828 1.21274 0.93007 1.13725 1.04480 1.22041 0.94891 0.99391 0.95081 1.20025 0.95441 0.98849 0.97824 1.77377 1.01925 1.16971 1.14565 1.49372 1.02410 1.40366 1.20653 1.19649 0.98192 0.89442 0.78966 1.21374 1.50179 0.89591 0.96804 0.91631 1.24942 0.94331 0.99855 0.94570 1.69927 1.46709 1.34722 1.01275 0.86302 0.77989 0.83580 0.78826 1.19585 1.20646 1.20507 0.90808 0.89902 0.90925 0.84766 0.84659 0.73296 0.86525 0.87964 0.74394 0.82110 0.91321 0.91112 0.91468 0.92489 0.93718 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.92 37.16 0.37 -0.40 16 2 C -0.63 -3.28 6.79 37.16 0.25 -3.02 16 3 S 2.62 22.78 5.46 -107.50 -0.59 22.19 16 4 O -0.95 -11.43 18.08 -57.54 -1.04 -12.47 16 5 O -0.95 -11.36 17.49 -57.54 -1.01 -12.36 16 6 N -1.11 -9.99 5.82 -11.66 -0.07 -10.05 16 7 C 0.10 0.88 6.61 -5.19 -0.03 0.85 16 8 C 0.52 7.07 7.86 -10.98 -0.09 6.99 16 9 O -0.51 -8.23 12.86 5.55 0.07 -8.16 16 10 N -0.64 -9.93 5.41 -11.46 -0.06 -9.99 16 11 C 0.30 5.97 7.66 -153.16 -1.17 4.79 16 12 C -0.29 -5.76 9.58 -39.78 -0.38 -6.14 16 13 C 0.05 0.99 7.21 -82.44 -0.59 0.40 16 14 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 15 N -0.28 -6.42 12.56 33.65 0.42 -6.00 16 16 N -0.34 -7.73 3.60 -61.58 -0.22 -7.95 16 17 C 0.26 6.12 6.01 -5.20 -0.03 6.09 16 18 C -0.54 -13.97 9.39 -34.44 -0.32 -14.29 16 19 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 20 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -23.50 13.29 55.43 0.74 -22.76 16 22 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.14 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.43 4.17 7.67 -34.47 -0.26 3.90 16 32 H 0.12 0.87 7.69 -51.93 -0.40 0.47 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.42 5.79 7.96 -40.82 -0.32 5.46 16 35 H 0.16 3.04 5.83 -52.49 -0.31 2.74 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.05 1.02 7.49 -51.93 -0.39 0.63 16 41 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -35.89 366.55 -8.43 -44.32 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.46 Total: 6.48 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.72 Total: -3.65 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.81 Total: -56.76 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.98 Total: -32.99 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 22.78 SS G_CDS: -0.59 Total: 22.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.89 -8.43 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533919613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds