Wall clock time and date at job start Tue Mar 31 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 N 1.46493 * 109.47137 * 179.97438 * 9 8 6 11 11 S 1.65607 * 119.99720 * 164.99638 * 10 9 8 12 12 C 1.81400 * 104.44832 * 65.00284 * 11 10 9 13 13 O 1.42098 * 104.27476 * 181.07265 * 11 10 9 14 14 O 1.42091 * 104.27792 * 308.93098 * 11 10 9 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 17 17 C 1.46509 * 125.97450 * 359.96761 * 16 2 1 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47006 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46890 * 120.00230 * 22 20 18 25 25 H 1.48501 * 109.46779 * 239.99778 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 30 30 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 31 31 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 32 32 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 33 33 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 34 34 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 35 35 H 0.96993 * 120.00583 * 344.99899 * 10 9 8 36 36 H 1.09004 * 109.46786 * 59.99932 * 12 11 10 37 37 H 1.09002 * 109.46933 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.47209 * 299.99955 * 12 11 10 39 39 H 1.08994 * 109.46750 * 210.00045 * 17 16 2 40 40 H 1.09004 * 109.46474 * 329.99737 * 17 16 2 41 41 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 7 6.6157 6.0232 0.0286 11 16 6.4761 7.6328 -0.3349 12 6 5.4659 8.3144 1.0088 13 8 7.8065 8.1260 -0.2580 14 8 5.7565 7.6543 -1.5599 15 7 3.6337 -0.6577 -0.0036 16 7 2.3017 -1.0909 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2770 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6985 22 14 1.0848 -4.8273 -3.4582 23 1 1.4409 -3.7240 -4.3861 24 1 1.9842 -5.9844 -3.6975 25 1 -0.3229 -5.2377 -3.6932 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0004 30 1 5.6584 1.0776 0.0049 31 1 6.4547 3.4893 0.9060 32 1 6.4532 3.4983 -0.8739 33 1 4.8320 5.3739 -0.8640 34 1 4.8330 5.3656 0.9159 35 1 7.4839 5.6482 0.2441 36 1 5.9721 8.1546 1.9609 37 1 5.3220 9.3830 0.8491 38 1 4.4971 7.8152 1.0241 39 1 2.5849 -3.1072 0.4976 40 1 0.8916 -2.5584 0.5012 41 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535775111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:59 Heat of formation + Delta-G solvation = -32.673857 kcal Electronic energy + Delta-G solvation = -25129.262283 eV Core-core repulsion = 21173.344180 eV Total energy + Delta-G solvation = -3955.918103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82303 -39.52432 -37.50526 -36.38731 -36.10174 -34.90255 -33.43259 -31.66388 -31.08278 -30.36635 -29.90619 -26.75460 -26.39677 -24.47914 -22.89819 -21.28111 -20.03269 -19.86837 -19.17704 -18.03466 -17.13956 -16.78146 -16.71120 -16.28123 -16.19211 -16.01204 -15.34898 -15.04408 -14.63740 -14.33123 -14.04844 -13.96263 -13.67311 -13.58439 -13.03492 -12.71304 -12.52307 -12.51451 -12.41549 -12.36053 -12.29109 -12.08044 -11.97520 -11.71276 -11.45602 -11.44101 -11.10591 -10.88766 -10.48542 -10.28757 -10.02356 -9.94197 -9.67392 -9.55659 -8.68225 -7.99999 -7.52029 -6.29081 -4.36808 -0.15858 2.20652 2.21104 2.73691 2.85263 3.18142 3.26316 3.32398 3.38565 3.64589 3.75833 3.83056 4.17224 4.27672 4.33833 4.50405 4.63335 4.65386 4.99646 5.04754 5.07989 5.21887 5.39623 5.41908 5.60514 5.67015 5.89577 6.05788 6.18095 6.42494 6.48115 6.49682 6.66404 6.88787 7.00861 7.38016 7.56307 7.63935 7.85004 8.00003 8.13302 8.59599 8.71617 9.29930 10.78218 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.001955 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.727529 B =14321.455740 C =14539.931143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.260 3.740 5 N -0.630 5.630 6 C 0.521 3.479 7 O -0.516 6.516 8 C -0.143 4.143 9 C 0.127 3.873 10 N -1.122 6.122 11 S 2.618 3.382 12 C -0.674 4.674 13 O -0.961 6.961 14 O -0.954 6.954 15 N -0.320 5.320 16 N -0.316 5.316 17 C 0.258 3.742 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.418 0.582 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 22.324 6.050 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.277 5.277 6 C 0.306 3.694 7 O -0.390 6.390 8 C -0.185 4.185 9 C 0.001 3.999 10 N -0.882 5.882 11 S 2.709 3.291 12 C -0.824 4.824 13 O -0.952 6.952 14 O -0.943 6.943 15 N -0.150 5.150 16 N -0.098 5.098 17 C 0.140 3.860 18 C -0.575 4.575 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.247 0.753 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.252 0.748 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.898 21.853 5.305 24.184 hybrid contribution -0.021 -0.391 -0.136 0.414 sum 8.877 21.463 5.169 23.794 Atomic orbital electron populations 1.20385 0.87884 1.03929 1.02544 1.21083 0.94962 0.87147 1.00791 1.21243 0.89695 0.99808 1.21324 1.18999 0.87229 0.89622 1.03374 1.42465 1.07662 1.05108 1.72463 1.20369 0.91080 0.81569 0.76354 1.90675 1.26816 1.73806 1.47743 1.21743 0.96915 0.93893 1.05942 1.21071 0.86053 0.88776 1.04029 1.55589 1.16327 1.27294 1.88983 1.04624 0.75013 0.73274 0.76167 1.30525 1.17178 1.13697 1.20957 1.93624 1.34782 1.79163 1.87605 1.93639 1.75413 1.85360 1.39938 1.77252 1.00033 1.08535 1.29214 1.49014 1.00944 1.07839 1.52039 1.19708 0.95993 0.71283 0.98988 1.21358 1.46780 0.97986 0.91348 0.91678 1.24935 0.94658 0.96046 0.98183 1.69922 1.44910 1.06968 1.31114 0.86298 0.77893 0.78802 0.83686 1.19559 1.20649 1.20615 0.91070 0.89881 0.90574 0.82289 0.75340 0.87668 0.87432 0.88840 0.90565 0.74769 0.85224 0.85311 0.85071 0.92991 0.92762 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.87 6.92 -82.28 -0.57 1.30 16 3 C -0.29 -5.69 9.52 -39.83 -0.38 -6.06 16 4 C 0.26 5.01 8.11 -154.38 -1.25 3.75 16 5 N -0.63 -8.61 5.45 -11.13 -0.06 -8.67 16 6 C 0.52 6.19 7.80 -10.98 -0.09 6.10 16 7 O -0.52 -7.82 13.11 5.55 0.07 -7.75 16 8 C -0.14 -0.92 5.84 -27.88 -0.16 -1.08 16 9 C 0.13 0.83 5.42 -4.04 -0.02 0.81 16 10 N -1.12 -5.62 5.89 -10.61 -0.06 -5.69 16 11 S 2.62 16.76 6.10 -107.50 -0.66 16.11 16 12 C -0.67 -2.23 10.89 101.05 1.10 -1.13 16 13 O -0.96 -9.24 18.08 -57.54 -1.04 -10.28 16 14 O -0.95 -10.28 17.50 -57.54 -1.01 -11.28 16 15 N -0.32 -7.13 12.59 31.44 0.40 -6.74 16 16 N -0.32 -7.31 3.59 -58.32 -0.21 -7.52 16 17 C 0.26 6.49 5.81 -5.19 -0.03 6.46 16 18 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 16 19 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 22 Si 0.91 20.89 29.54 -169.99 -5.02 15.86 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.16 2.99 5.92 -52.49 -0.31 2.68 16 30 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.77 7.65 -51.93 -0.40 0.38 16 34 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.42 1.33 8.62 -34.47 -0.30 1.03 16 36 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 37 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 1.35 7.65 -51.93 -0.40 0.95 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -38.01 367.22 -8.29 -46.31 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.51 Total: 2.29 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.47 Total: -4.19 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.80 Total: -52.60 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.97 Total: -29.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 16.76 SS G_CDS: -0.66 Total: 16.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.01 -8.29 -46.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535775111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.632 kcal (2) G-P(sol) polarization free energy of solvation -38.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds