Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99769 * 2 1 4 4 H 1.48501 * 109.47544 * 269.99889 * 3 2 1 5 5 H 1.48502 * 109.47192 * 30.00500 * 3 2 1 6 6 H 1.48508 * 109.46849 * 149.99866 * 3 2 1 7 7 C 1.37878 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00196 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00025 * 180.02562 * 7 2 1 10 10 C 1.53041 * 109.45993 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31074 * 181.38310 * 10 9 7 12 12 N 1.46928 * 108.77842 * 305.36342 * 11 10 9 13 13 C 1.34776 * 120.62857 * 233.59106 * 12 11 10 14 14 O 1.21586 * 120.00067 * 5.21225 * 13 12 11 15 15 N 1.34782 * 119.99519 * 185.21961 * 13 12 11 16 16 C 1.46500 * 119.99721 * 175.01953 * 15 13 12 17 17 H 1.08997 * 109.38320 * 324.78839 * 16 15 13 18 18 C 1.52581 * 109.29937 * 84.52342 * 16 15 13 19 19 C 1.52594 * 110.64328 * 190.08876 * 18 16 15 20 20 C 1.53034 * 109.98625 * 290.01665 * 19 18 16 21 21 S 1.81672 * 108.99876 * 63.64524 * 20 19 18 22 22 O 1.42100 * 108.66291 * 191.36825 * 21 20 19 23 23 O 1.42104 * 108.66051 * 60.02944 * 21 20 19 24 24 C 1.53036 * 109.38327 * 204.99886 * 16 15 13 25 25 C 1.46930 * 118.73502 * 53.85878 * 12 11 10 26 26 C 1.53044 * 109.45627 * 300.06376 * 9 7 2 27 27 H 0.97001 * 120.00218 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45952 * 60.02015 * 9 7 2 29 29 H 1.08991 * 109.49965 * 61.42784 * 10 9 7 30 30 H 1.09006 * 109.52162 * 301.34761 * 10 9 7 31 31 H 1.09000 * 109.58634 * 185.57060 * 11 10 9 32 32 H 1.09008 * 109.70351 * 65.21861 * 11 10 9 33 33 H 0.97003 * 119.99772 * 355.01919 * 15 13 12 34 34 H 1.08993 * 109.24899 * 310.39199 * 18 16 15 35 35 H 1.09006 * 109.24327 * 69.83138 * 18 16 15 36 36 H 1.08997 * 109.38381 * 50.17481 * 19 18 16 37 37 H 1.08999 * 109.38361 * 169.86268 * 19 18 16 38 38 H 1.09000 * 109.55212 * 303.79124 * 20 19 18 39 39 H 1.08994 * 109.55064 * 183.50013 * 20 19 18 40 40 H 1.09004 * 109.54792 * 56.44343 * 24 16 15 41 41 H 1.08992 * 109.62808 * 296.20128 * 24 16 15 42 42 H 1.08999 * 109.58511 * 65.93082 * 25 12 11 43 43 H 1.09005 * 109.58143 * 186.35554 * 25 12 11 44 44 H 1.09003 * 109.49446 * 298.56561 * 26 9 7 45 45 H 1.09003 * 109.49744 * 58.63279 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6371 -0.0001 11 6 5.5529 -2.6332 0.0354 12 7 6.0498 -1.8176 -1.0811 13 6 6.9443 -2.3212 -1.9545 14 8 7.2761 -3.4885 -1.8797 15 7 7.4710 -1.5307 -2.9106 16 6 8.5228 -2.0467 -3.7903 17 1 9.1637 -2.7258 -3.2281 18 6 7.8833 -2.7999 -4.9529 19 6 8.9410 -3.5588 -5.7491 20 6 9.8279 -2.5730 -6.5130 21 16 10.7260 -1.5383 -5.3199 22 8 11.3366 -0.4629 -6.0198 23 8 11.5255 -2.3796 -4.4999 24 6 9.3597 -0.8800 -4.3198 25 6 5.5575 -0.4406 -1.2238 26 6 4.0218 -0.4703 -1.2482 27 1 -0.4850 0.8400 0.0004 28 1 3.8743 -0.6811 0.8908 29 1 3.6796 -3.1436 -0.9026 30 1 3.6384 -3.1588 0.8771 31 1 5.9232 -3.6535 -0.0642 32 1 5.8976 -2.2099 0.9789 33 1 7.1537 -0.6201 -3.0163 34 1 7.1509 -3.5069 -4.5636 35 1 7.3820 -2.0886 -5.6095 36 1 9.5562 -4.1449 -5.0664 37 1 8.4506 -4.2274 -6.4566 38 1 9.2076 -1.9415 -7.1490 39 1 10.5403 -3.1236 -7.1271 40 1 9.7622 -0.3102 -3.4823 41 1 8.7362 -0.2320 -4.9357 42 1 5.9005 0.1593 -0.3809 43 1 5.9310 -0.0138 -2.1547 44 1 3.6800 -0.9970 -2.1393 45 1 3.6387 0.5501 -1.2592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543685607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = -93.935761 kcal Electronic energy + Delta-G solvation = -27267.979482 eV Core-core repulsion = 23412.945207 eV Total energy + Delta-G solvation = -3855.034275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.44186 -38.24968 -37.37490 -36.72799 -36.43240 -34.30780 -33.54281 -31.76706 -30.91608 -30.14142 -28.08831 -26.48149 -23.93743 -22.80142 -22.78220 -21.43234 -20.44433 -19.52656 -18.98096 -18.01995 -17.37587 -16.79386 -16.67341 -16.16303 -15.92009 -15.49118 -15.34570 -14.97364 -14.54609 -14.51013 -13.95368 -13.78717 -13.56263 -13.45810 -13.11452 -12.89262 -12.65362 -12.54864 -12.42047 -12.29084 -12.16583 -12.01059 -11.91828 -11.80688 -11.46326 -11.25793 -11.09750 -10.81197 -10.72102 -10.30797 -10.24491 -9.87591 -9.79224 -9.38594 -9.28231 -9.15132 -8.63378 -8.19063 -6.15307 -4.14751 -0.45097 2.14852 2.72425 3.14151 3.19524 3.25381 3.25872 3.30442 3.47014 3.87091 3.97102 4.13835 4.21809 4.29464 4.30656 4.54277 4.81260 4.84532 5.02436 5.07322 5.15110 5.23094 5.29744 5.45872 5.50497 5.54496 5.69548 5.75324 5.77383 5.82899 5.92699 6.13785 6.23714 6.32951 6.51798 6.58438 6.64008 6.78995 7.08682 7.14533 7.42436 7.67026 7.99929 8.44448 8.65732 8.89506 9.46354 10.98144 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.002841 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.716259 B = 9853.093243 C =10326.964184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.126 3.874 12 N -0.617 5.617 13 C 0.708 3.292 14 O -0.593 6.593 15 N -0.744 5.744 16 C 0.182 3.818 17 H 0.107 0.893 18 C -0.156 4.156 19 C -0.107 4.107 20 C -0.603 4.603 21 S 2.426 3.574 22 O -0.940 6.940 23 O -0.930 6.930 24 C -0.624 4.624 25 C 0.107 3.893 26 C -0.134 4.134 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.140 -1.637 -12.136 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.152 4.152 11 C 0.003 3.997 12 N -0.353 5.353 13 C 0.409 3.591 14 O -0.472 6.472 15 N -0.402 5.402 16 C 0.075 3.925 17 H 0.125 0.875 18 C -0.194 4.194 19 C -0.146 4.146 20 C -0.732 4.732 21 S 2.607 3.393 22 O -0.937 6.937 23 O -0.927 6.927 24 C -0.752 4.752 25 C -0.016 4.016 26 C -0.172 4.172 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.137 -2.209 -11.954 23.522 hybrid contribution -0.846 1.645 -0.323 1.878 sum 19.291 -0.564 -12.277 22.873 Atomic orbital electron populations 1.69897 1.06314 1.26957 1.50669 1.25059 0.94706 0.99063 0.94576 0.86855 0.80016 0.83697 0.77693 1.20665 1.22445 1.19005 1.21056 0.88745 0.94500 1.50800 0.90812 1.19117 0.96783 0.91797 0.92654 1.21837 0.91948 0.99404 1.01989 1.21682 0.95712 0.95492 0.86793 1.47334 1.44008 1.14759 1.29244 1.15815 0.79480 0.84617 0.79179 1.90888 1.65643 1.15117 1.75561 1.45291 1.42114 1.16811 1.36034 1.20343 0.88722 0.92194 0.91283 0.87516 1.22211 0.99610 1.00909 0.96704 1.21227 0.96894 0.97248 0.99187 1.30258 1.13401 1.13870 1.15702 1.07870 0.77292 0.76580 0.77598 1.93613 1.73014 1.54119 1.72980 1.93620 1.64328 1.67505 1.67293 1.30738 1.18727 1.09752 1.16021 1.21894 0.97163 0.82198 1.00358 1.22458 0.91225 1.01077 1.02477 0.92629 0.95390 0.92274 0.91271 0.89622 0.92156 0.76452 0.88465 0.90548 0.89275 0.88989 0.84719 0.84551 0.83989 0.84226 0.91673 0.91870 0.91604 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.76 16 3 Si 0.89 20.48 24.38 -169.99 -4.14 16.34 16 4 H -0.28 -6.18 6.86 56.52 0.39 -5.79 16 5 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -5.73 6.53 56.52 0.37 -5.36 16 7 C -0.51 -13.64 9.14 -34.44 -0.31 -13.96 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.33 1.65 -91.73 -0.15 0.18 16 10 C -0.11 -2.12 5.30 -26.61 -0.14 -2.26 16 11 C 0.13 2.04 6.44 -3.71 -0.02 2.02 16 12 N -0.62 -9.65 2.97 -178.22 -0.53 -10.18 16 13 C 0.71 10.80 8.19 -86.91 -0.71 10.09 16 14 O -0.59 -10.75 15.34 5.29 0.08 -10.67 16 15 N -0.74 -8.25 4.98 -58.87 -0.29 -8.54 16 16 C 0.18 1.63 2.24 -68.13 -0.15 1.48 16 17 H 0.11 1.13 7.53 -51.93 -0.39 0.74 16 18 C -0.16 -1.19 5.19 -27.15 -0.14 -1.33 16 19 C -0.11 -0.63 5.73 -26.92 -0.15 -0.78 16 20 C -0.60 -2.69 6.35 37.17 0.24 -2.46 16 21 S 2.43 17.11 5.31 -107.50 -0.57 16.54 16 22 O -0.94 -9.68 18.10 -57.81 -1.05 -10.73 16 23 O -0.93 -10.12 17.94 -57.81 -1.04 -11.16 16 24 C -0.62 -3.73 5.81 37.18 0.22 -3.52 16 25 C 0.11 1.59 6.42 -3.49 -0.02 1.56 16 26 C -0.13 -2.55 4.86 -26.39 -0.13 -2.68 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.40 3.62 6.09 -40.82 -0.25 3.37 16 34 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.09 0.58 8.01 -51.93 -0.42 0.16 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.73 5.64 -51.93 -0.29 0.43 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.15 3.24 -51.93 -0.17 0.98 16 LS Contribution 354.68 15.07 5.35 5.35 Total: -1.00 -36.63 354.68 -9.92 -46.56 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.91 Total: 2.31 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.59 Total: -9.90 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.05 Total: -44.63 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -2.00 Total: -32.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.14 Total: 16.34 kcal Atomic # 16 Polarization: 17.11 SS G_CDS: -0.57 Total: 16.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.63 -9.92 -46.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543685607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.379 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds