Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47420 * 270.00000 * 3 2 1 5 5 H 1.48503 * 109.47450 * 30.00068 * 3 2 1 6 6 H 1.48506 * 109.47148 * 150.00304 * 3 2 1 7 7 C 1.37878 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 O 1.42893 * 112.94967 * 309.67531 * 9 7 2 11 11 C 1.53946 * 113.74118 * 81.26851 * 9 7 2 12 12 N 1.47927 * 85.99868 * 138.00191 * 11 9 7 13 13 C 1.34774 * 134.49739 * 155.34400 * 12 11 9 14 14 O 1.21556 * 119.99557 * 177.17380 * 13 12 11 15 15 C 1.47862 * 120.00389 * 357.16793 * 13 12 11 16 16 C 1.39617 * 120.10852 * 7.82467 * 15 13 12 17 17 C 1.37983 * 119.98967 * 179.76282 * 16 15 13 18 18 C 1.38253 * 120.22646 * 0.51876 * 17 16 15 19 19 C 1.38949 * 120.22119 * 359.73900 * 18 17 16 20 20 N 1.39956 * 119.99455 * 180.02562 * 19 18 17 21 21 C 1.46756 * 124.35515 * 5.28989 * 20 19 18 22 22 C 1.54654 * 105.38577 * 162.85414 * 21 20 19 23 23 C 1.54636 * 101.68407 * 25.76688 * 22 21 20 24 24 C 1.34424 * 124.34499 * 185.58986 * 20 19 18 25 25 O 1.21295 * 124.94430 * 0.39047 * 24 20 19 26 26 C 1.38639 * 120.00281 * 0.02562 * 19 18 17 27 27 C 1.47575 * 91.00626 * 335.35779 * 12 11 9 28 28 H 0.97004 * 119.99749 * 0.02562 * 1 2 3 29 29 H 0.96704 * 114.00258 * 50.32851 * 10 9 7 30 30 H 1.08999 * 113.76906 * 252.36304 * 11 9 7 31 31 H 1.09006 * 113.76614 * 23.75639 * 11 9 7 32 32 H 1.07994 * 120.00354 * 0.02950 * 16 15 13 33 33 H 1.07998 * 119.88105 * 180.23129 * 17 16 15 34 34 H 1.08001 * 119.88989 * 179.71437 * 18 17 16 35 35 H 1.09004 * 110.24638 * 281.98570 * 21 20 19 36 36 H 1.08999 * 110.24327 * 43.98227 * 21 20 19 37 37 H 1.08996 * 111.19342 * 267.59815 * 22 21 20 38 38 H 1.08997 * 110.82460 * 143.77568 * 22 21 20 39 39 H 1.09000 * 110.48834 * 216.30885 * 23 22 21 40 40 H 1.09000 * 110.48164 * 93.66577 * 23 22 21 41 41 H 1.07994 * 120.11084 * 179.97438 * 26 19 18 42 42 H 1.09009 * 113.77071 * 270.33858 * 27 12 11 43 43 H 1.08999 * 113.87354 * 138.95417 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.2452 -2.5618 1.0126 11 6 0.7552 -2.9286 -1.3933 12 7 1.1897 -4.2907 -1.0138 13 6 0.8395 -5.5348 -1.3961 14 8 1.4193 -6.4982 -0.9344 15 6 -0.2501 -5.7277 -2.3768 16 6 -0.8071 -4.6269 -3.0305 17 6 -1.8205 -4.8102 -3.9489 18 6 -2.2951 -6.0807 -4.2173 19 6 -1.7510 -7.1821 -3.5681 20 7 -2.2347 -8.4662 -3.8438 21 6 -3.2315 -8.7716 -4.8767 22 6 -3.1231 -10.2960 -5.1136 23 6 -2.5660 -10.7850 -3.7565 24 6 -1.8501 -9.5775 -3.1927 25 8 -1.0458 -9.6078 -2.2853 26 6 -0.7292 -7.0092 -2.6472 27 6 2.1606 -3.7402 -0.0484 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3469 -1.7973 1.0269 30 1 -0.3223 -2.8301 -1.5257 31 1 1.3272 -2.4980 -2.2152 32 1 -0.4419 -3.6325 -2.8205 33 1 -2.2475 -3.9578 -4.4562 34 1 -3.0916 -6.2174 -4.9337 35 1 -4.2302 -8.5117 -4.5257 36 1 -3.0011 -8.2310 -5.7948 37 1 -2.4293 -10.5205 -5.9237 38 1 -4.1040 -10.7282 -5.3111 39 1 -1.8670 -11.6080 -3.9052 40 1 -3.3794 -11.0885 -3.0974 41 1 -0.3054 -7.8640 -2.1413 42 1 3.1445 -3.5474 -0.4761 43 1 2.2060 -4.2882 0.8928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548331209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -33.198064 kcal Electronic energy + Delta-G solvation = -27907.731414 eV Core-core repulsion = 23919.886972 eV Total energy + Delta-G solvation = -3987.844442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23397 -39.78652 -38.30892 -37.12916 -36.68129 -34.00939 -33.32608 -32.22378 -31.08981 -29.45439 -28.35171 -27.97519 -25.49760 -25.48707 -23.64578 -22.94678 -21.90193 -20.35462 -19.68291 -18.67368 -17.70906 -17.22246 -17.09284 -16.58267 -15.75170 -15.59006 -15.47612 -15.03213 -14.64113 -14.40712 -14.18743 -14.10764 -13.92728 -13.75742 -13.43419 -13.18053 -13.13565 -12.70447 -12.48679 -12.35052 -12.04361 -11.90969 -11.69364 -11.57449 -11.55620 -11.41956 -11.06611 -10.88191 -10.49853 -10.33832 -10.25722 -9.73427 -9.62124 -9.21337 -8.86991 -8.77443 -8.35353 -7.98687 -7.81250 -6.39712 -4.49748 1.00762 1.38508 2.38331 2.55184 3.14230 3.22765 3.26215 3.31745 3.54315 3.89724 3.98538 4.15074 4.19416 4.35343 4.55739 4.77352 4.85316 4.92408 5.00535 5.04903 5.16160 5.22939 5.33295 5.34798 5.46922 5.49858 5.52994 5.62133 5.91297 5.96371 6.11607 6.18721 6.32467 6.35906 6.48222 6.48453 6.57999 6.67795 6.73967 6.90766 7.07785 7.10477 7.62603 7.81944 7.86111 8.47074 8.53656 8.80119 9.21320 9.43167 10.66963 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.002723 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.248542 B =10281.965643 C =10977.331601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.571 6.571 11 C 0.069 3.931 12 N -0.626 5.626 13 C 0.568 3.432 14 O -0.555 6.555 15 C -0.090 4.090 16 C -0.122 4.122 17 C -0.101 4.101 18 C -0.141 4.141 19 C 0.147 3.853 20 N -0.560 5.560 21 C 0.096 3.904 22 C -0.131 4.131 23 C -0.152 4.152 24 C 0.508 3.492 25 O -0.500 6.500 26 C -0.103 4.103 27 C 0.113 3.887 28 H 0.273 0.727 29 H 0.391 0.609 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.166 0.834 42 H 0.087 0.913 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -13.085 -14.141 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.053 4.053 12 N -0.358 5.358 13 C 0.358 3.642 14 O -0.436 6.436 15 C -0.093 4.093 16 C -0.141 4.141 17 C -0.120 4.120 18 C -0.161 4.161 19 C 0.054 3.946 20 N -0.285 5.285 21 C -0.027 4.027 22 C -0.168 4.168 23 C -0.193 4.193 24 C 0.297 3.703 25 O -0.374 6.374 26 C -0.124 4.124 27 C -0.008 4.008 28 H 0.083 0.917 29 H 0.246 0.754 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.183 0.817 42 H 0.105 0.895 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.480 -14.254 -13.313 21.686 hybrid contribution -0.093 1.522 -0.395 1.575 sum -9.573 -12.732 -13.707 21.015 Atomic orbital electron populations 1.69405 1.06128 1.28153 1.50097 1.25068 0.95042 0.99840 0.93109 0.86337 0.79865 0.82006 0.78343 1.20334 1.20931 1.19555 1.21504 0.93964 0.89886 1.52077 0.91007 1.19851 0.85668 0.91228 0.83486 1.86079 1.47073 1.49801 1.55301 1.24562 1.00178 0.77650 1.02935 1.50102 1.39877 1.04469 1.41379 1.17847 0.83077 0.81999 0.81289 1.90726 1.55890 1.39549 1.57394 1.19908 0.97666 0.93439 0.98323 1.22247 0.96215 1.00163 0.95499 1.20911 0.96839 0.96322 0.97914 1.20856 1.01667 0.91658 1.01962 1.17584 0.95841 0.83153 0.98013 1.45764 1.41193 1.05544 1.36000 1.22280 0.92107 0.96825 0.91448 1.22649 1.03255 0.93733 0.97206 1.22344 1.02047 0.97086 0.97779 1.21152 0.81832 0.85370 0.81939 1.90734 1.32945 1.85432 1.28258 1.21686 0.94928 0.98732 0.97021 1.23471 0.93286 0.92632 0.91436 0.91700 0.75391 0.90297 0.89590 0.83171 0.85018 0.85687 0.90082 0.89492 0.89557 0.88640 0.87495 0.87328 0.81731 0.89486 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.28 11.20 55.43 0.62 -21.66 16 2 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 3 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -13.30 8.61 -34.44 -0.30 -13.60 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.24 5.74 1.40 -90.84 -0.13 5.61 16 10 O -0.57 -14.74 13.48 -35.23 -0.48 -15.21 16 11 C 0.07 1.47 5.95 -2.77 -0.02 1.46 16 12 N -0.63 -13.93 3.61 -179.11 -0.65 -14.58 16 13 C 0.57 13.00 7.99 -12.32 -0.10 12.90 16 14 O -0.56 -14.33 17.10 5.32 0.09 -14.24 16 15 C -0.09 -1.75 5.87 -104.99 -0.62 -2.37 16 16 C -0.12 -2.03 9.12 -39.16 -0.36 -2.39 16 17 C -0.10 -1.33 10.02 -39.67 -0.40 -1.73 16 18 C -0.14 -1.71 9.40 -39.31 -0.37 -2.08 16 19 C 0.15 2.15 6.59 -83.74 -0.55 1.60 16 20 N -0.56 -6.57 3.14 -112.20 -0.35 -6.93 16 21 C 0.10 0.60 6.27 -3.03 -0.02 0.58 16 22 C -0.13 -0.55 7.19 -25.00 -0.18 -0.73 16 23 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 24 C 0.51 6.54 7.92 -10.86 -0.09 6.45 16 25 O -0.50 -8.95 14.81 5.54 0.08 -8.87 16 26 C -0.10 -1.92 8.83 -38.98 -0.34 -2.26 16 27 C 0.11 2.55 8.23 -2.97 -0.02 2.53 16 28 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 29 H 0.39 10.09 6.60 45.56 0.30 10.39 16 30 H 0.08 1.65 6.27 -51.93 -0.33 1.33 16 31 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 32 H 0.15 2.53 3.78 -52.49 -0.20 2.33 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.07 6.98 -52.49 -0.37 0.70 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.44 7.67 -51.93 -0.40 0.04 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.17 3.51 4.86 -52.49 -0.26 3.26 16 42 H 0.09 1.78 8.09 -51.92 -0.42 1.36 16 43 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -32.90 355.24 -8.70 -41.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.59 Total: 13.91 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.76 Total: 6.40 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.38 Total: -43.17 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.30 Total: -38.32 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.90 -8.70 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548331209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.398 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds