Wall clock time and date at job start Tue Mar 31 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47493 * 2 1 4 4 C 1.52995 * 109.47493 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46971 * 305.00175 * 4 3 2 6 6 C 1.50695 * 109.47580 * 185.00591 * 4 3 2 7 7 O 1.21297 * 119.99358 * 329.99921 * 6 4 3 8 8 N 1.34771 * 120.00677 * 150.00142 * 6 4 3 9 9 C 1.40154 * 120.00504 * 179.97438 * 8 6 4 10 10 C 1.40411 * 125.97106 * 0.02562 * 9 8 6 11 11 C 1.35241 * 107.86611 * 179.74212 * 10 9 8 12 12 N 1.34965 * 107.86302 * 0.38043 * 11 10 9 13 13 C 1.46495 * 125.97869 * 179.87777 * 12 11 10 14 14 C 1.50702 * 109.47571 * 124.71943 * 13 12 11 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31221 * 125.97729 * 179.97438 * 9 8 6 23 23 S 1.81396 * 109.47059 * 64.99891 * 4 3 2 24 24 N 1.65606 * 104.44665 * 60.00258 * 23 4 3 25 25 O 1.42101 * 110.54205 * 171.62373 * 23 4 3 26 26 O 1.42097 * 110.54543 * 308.37964 * 23 4 3 27 27 H 1.09005 * 109.47384 * 59.99904 * 1 2 3 28 28 H 1.09003 * 109.47645 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47233 * 299.99603 * 1 2 3 30 30 H 1.09003 * 109.46568 * 240.00096 * 2 1 3 31 31 H 1.09003 * 109.46831 * 120.00601 * 2 1 3 32 32 H 1.09005 * 109.46630 * 60.00420 * 3 2 1 33 33 H 1.08997 * 109.47213 * 300.00437 * 3 2 1 34 34 H 0.97004 * 119.99445 * 359.97438 * 8 6 4 35 35 H 1.07998 * 126.06914 * 359.97438 * 10 9 8 36 36 H 1.08001 * 126.07068 * 180.26820 * 11 10 9 37 37 H 1.09000 * 109.47378 * 4.71603 * 13 12 11 38 38 H 1.09001 * 109.47153 * 244.71723 * 13 12 11 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 40 40 H 0.96996 * 119.99852 * 0.02562 * 24 23 4 41 41 H 0.96997 * 119.99796 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8530 0.8427 6 6 4.0724 2.8577 0.1246 7 8 3.4170 3.7751 -0.3227 8 7 5.2497 3.1042 0.7324 9 6 5.7172 4.4205 0.8472 10 6 5.0645 5.5714 0.3772 11 6 5.8336 6.6400 0.6864 12 7 6.9359 6.1873 1.3200 13 6 8.0363 7.0106 1.8272 14 6 8.2407 6.7282 3.2934 15 1 7.6133 6.0077 3.7970 16 6 9.2279 7.3904 3.9919 17 7 9.4027 7.1479 5.2726 18 14 10.3126 8.6371 3.1209 19 1 11.5120 7.9531 2.5741 20 1 9.5518 9.2651 2.0109 21 1 10.7362 9.6839 4.0851 22 7 6.8408 4.7929 1.4135 23 16 4.1753 0.7194 -1.5490 24 7 3.5575 1.7004 -2.7316 25 8 5.5827 0.8818 -1.6587 26 8 3.5627 -0.5411 -1.7839 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 5.7736 2.3705 1.0904 35 1 4.1149 5.5989 -0.1365 36 1 5.6070 7.6723 0.4640 37 1 7.7944 8.0646 1.6905 38 1 8.9492 6.7736 1.2809 39 1 10.0946 7.6166 5.7650 40 1 3.0068 2.4618 -2.4914 41 1 3.7471 1.5139 -3.6644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590442001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:50 Heat of formation + Delta-G solvation = -24.064128 kcal Electronic energy + Delta-G solvation = -26239.486834 eV Core-core repulsion = 22283.942077 eV Total energy + Delta-G solvation = -3955.544757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01377 -39.77358 -37.69594 -36.38715 -35.91114 -35.06692 -33.44485 -33.37267 -31.74189 -30.88589 -29.53330 -27.34789 -25.53790 -22.88130 -21.96693 -21.80749 -20.51944 -19.92854 -19.77970 -18.47873 -17.95228 -17.17562 -17.04011 -16.65828 -16.25967 -16.14377 -15.52002 -15.20240 -14.76050 -14.56633 -14.28567 -14.20284 -13.72634 -13.22031 -13.19655 -12.82282 -12.63529 -12.55197 -12.50628 -12.47450 -12.43717 -12.18844 -11.88792 -11.42702 -11.36895 -11.23427 -10.94272 -10.71935 -10.66040 -10.57226 -10.29445 -10.07742 -9.91910 -9.59600 -8.80589 -8.33578 -7.68887 -6.27363 -4.30264 -0.35212 1.90963 2.21923 2.50837 2.72486 3.11675 3.13625 3.18348 3.21111 3.38987 3.50240 3.65911 4.04440 4.19443 4.37093 4.42968 4.67234 4.75371 5.00171 5.09279 5.23186 5.31344 5.43849 5.46697 5.56285 5.69589 5.77031 5.85511 5.97344 6.05777 6.23995 6.31472 6.38404 6.56692 6.76522 7.11148 7.17223 7.34521 7.70715 7.81090 8.27478 8.42820 8.81377 9.27189 10.85262 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023931 B = 0.002610 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.751177 B =10723.351441 C =10964.159234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.087 4.087 4 C -0.613 4.613 5 H 0.167 0.833 6 C 0.539 3.461 7 O -0.499 6.499 8 N -0.614 5.614 9 C 0.255 3.745 10 C -0.283 4.283 11 C 0.054 3.946 12 N -0.315 5.315 13 C 0.231 3.769 14 C -0.536 4.536 15 H 0.086 0.914 16 C 0.077 3.923 17 N -0.887 5.887 18 Si 0.875 3.125 19 H -0.271 1.271 20 H -0.265 1.265 21 H -0.280 1.280 22 N -0.288 5.288 23 S 2.629 3.371 24 N -1.244 6.244 25 O -0.945 6.945 26 O -0.944 6.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.416 0.584 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.269 0.731 40 H 0.420 0.580 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 -11.601 -14.363 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.126 4.126 4 C -0.723 4.723 5 H 0.184 0.816 6 C 0.321 3.679 7 O -0.372 6.372 8 N -0.261 5.261 9 C 0.002 3.998 10 C -0.314 4.314 11 C -0.096 4.096 12 N -0.097 5.097 13 C 0.112 3.888 14 C -0.575 4.575 15 H 0.104 0.896 16 C -0.127 4.127 17 N -0.524 5.524 18 Si 0.701 3.299 19 H -0.196 1.196 20 H -0.190 1.190 21 H -0.206 1.206 22 N -0.119 5.119 23 S 2.716 3.284 24 N -0.921 5.921 25 O -0.934 6.934 26 O -0.933 6.933 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.249 0.751 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -14.758 -12.095 -13.815 23.557 hybrid contribution -0.150 1.291 -0.090 1.302 sum -14.908 -10.804 -13.905 23.072 Atomic orbital electron populations 1.21689 0.94780 1.02076 1.01999 1.22257 0.97582 0.95233 1.05589 1.21332 0.85985 0.99265 1.06001 1.30659 1.10039 1.05774 1.25826 0.81581 1.19031 0.80804 0.88616 0.79468 1.90680 1.55673 1.44072 1.46811 1.42307 1.20772 1.06626 1.56384 1.19019 0.94816 0.84627 1.01331 1.21513 1.05275 0.89175 1.15441 1.22576 0.88733 1.00080 0.98180 1.48683 1.17011 1.02942 1.41035 1.20105 0.83163 0.88651 0.96899 1.21090 1.19362 1.26080 0.90921 0.89644 1.24832 0.96571 0.96500 0.94830 1.69869 1.32948 1.41932 1.07643 0.86883 0.81597 0.81551 0.79868 1.19645 1.18953 1.20563 1.77434 1.17758 0.92378 1.24320 1.04550 0.74394 0.74148 0.75284 1.52960 1.70836 1.46621 1.21732 1.93676 1.29813 1.85774 1.84162 1.93564 1.77125 1.39921 1.82666 0.92438 0.92245 0.92689 0.87490 0.91159 0.88979 0.89524 0.74759 0.81942 0.81170 0.92750 0.94273 0.92119 0.75120 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.17 -1.16 5.65 -26.74 -0.15 -1.32 16 3 C -0.09 -0.62 4.14 -26.74 -0.11 -0.74 16 4 C -0.61 -5.03 2.75 -27.89 -0.08 -5.10 16 5 H 0.17 0.86 8.14 -51.92 -0.42 0.44 16 6 C 0.54 6.58 6.57 -10.99 -0.07 6.51 16 7 O -0.50 -6.80 12.79 5.54 0.07 -6.73 16 8 N -0.61 -9.00 5.45 -11.13 -0.06 -9.06 16 9 C 0.26 4.88 8.11 -154.39 -1.25 3.63 16 10 C -0.28 -5.11 9.61 -39.83 -0.38 -5.50 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.79 16 12 N -0.32 -6.93 3.67 -62.56 -0.23 -7.16 16 13 C 0.23 5.35 5.33 -5.20 -0.03 5.32 16 14 C -0.54 -14.91 9.79 -34.44 -0.34 -15.25 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 18 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 N -0.29 -6.47 12.42 31.44 0.39 -6.07 16 23 S 2.63 24.15 5.46 -107.50 -0.59 23.57 16 24 N -1.24 -8.97 9.13 60.35 0.55 -8.42 16 25 O -0.95 -12.40 18.01 -57.54 -1.04 -13.44 16 26 O -0.94 -9.85 14.89 -57.54 -0.86 -10.70 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.84 4.90 -51.93 -0.25 0.59 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.54 6.97 -51.93 -0.36 0.18 16 34 H 0.42 5.14 8.82 -40.82 -0.36 4.78 16 35 H 0.16 2.69 5.92 -52.49 -0.31 2.38 16 36 H 0.17 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 38 H 0.04 0.90 7.57 -51.93 -0.39 0.50 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 40 H 0.42 2.70 7.18 -34.47 -0.25 2.45 16 41 H 0.42 2.32 8.96 -34.47 -0.31 2.01 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -36.81 353.47 -7.82 -44.63 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.16 Total: 8.54 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.34 Total: -10.17 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 1.43 Total: -56.26 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.82 Total: -30.87 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Atomic # 16 Polarization: 24.15 SS G_CDS: -0.59 Total: 23.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.81 -7.82 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590442001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.568 kcal (2) G-P(sol) polarization free energy of solvation -36.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds