Wall clock time and date at job start Tue Mar 31 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00162 * 2 1 4 4 H 1.48502 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46800 * 299.99743 * 3 2 1 6 6 H 1.48493 * 109.47060 * 59.99806 * 3 2 1 7 7 C 1.37880 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00066 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50065 * 60.06354 * 9 7 2 11 11 C 1.53048 * 109.49892 * 180.15809 * 9 7 2 12 12 C 1.53350 * 109.60747 * 181.32556 * 11 9 7 13 13 C 1.53188 * 109.14976 * 298.71267 * 12 11 9 14 14 N 1.46925 * 108.89442 * 54.58200 * 13 12 11 15 15 C 1.34774 * 120.63404 * 126.33992 * 14 13 12 16 16 O 1.21592 * 120.00021 * 174.96302 * 15 14 13 17 17 N 1.34779 * 119.99867 * 354.96042 * 15 14 13 18 18 C 1.46494 * 119.99736 * 185.07135 * 17 15 14 19 19 C 1.53003 * 109.46963 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.28304 * 59.30002 * 19 18 17 21 21 C 1.54168 * 110.31810 * 181.41527 * 19 18 17 22 22 C 1.53883 * 108.70112 * 146.81456 * 21 19 18 23 23 C 1.55050 * 106.62036 * 312.81238 * 22 21 19 24 24 S 1.82920 * 110.31939 * 297.18492 * 19 18 17 25 25 O 1.42102 * 109.34939 * 352.37105 * 24 19 18 26 26 O 1.42101 * 109.35002 * 125.57344 * 24 19 18 27 27 C 1.46927 * 118.73541 * 306.31796 * 14 13 12 28 28 H 0.97005 * 119.99431 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.45680 * 301.33998 * 11 9 7 30 30 H 1.08998 * 109.45508 * 61.30842 * 11 9 7 31 31 H 1.09001 * 109.67772 * 178.75056 * 12 11 9 32 32 H 1.09002 * 109.47563 * 58.55539 * 12 11 9 33 33 H 1.09000 * 109.58756 * 294.72061 * 13 12 11 34 34 H 1.09003 * 109.58609 * 174.43706 * 13 12 11 35 35 H 0.96991 * 119.99992 * 5.07774 * 17 15 14 36 36 H 1.09004 * 109.47785 * 300.00254 * 18 17 15 37 37 H 1.08995 * 109.47332 * 60.00554 * 18 17 15 38 38 H 1.09003 * 109.64374 * 266.66215 * 21 19 18 39 39 H 1.08995 * 109.64668 * 27.09295 * 21 19 18 40 40 H 1.09000 * 110.03146 * 72.10840 * 22 21 19 41 41 H 1.09001 * 110.02040 * 193.48173 * 22 21 19 42 42 H 1.08998 * 110.78302 * 160.70366 * 23 22 21 43 43 H 1.08996 * 110.79172 * 284.17180 * 23 22 21 44 44 H 1.09003 * 109.58706 * 173.39745 * 27 14 13 45 45 H 1.08998 * 109.58967 * 293.67606 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8901 11 6 2.2449 -3.6629 0.0052 12 6 1.4810 -4.9922 -0.0282 13 6 0.6022 -5.0983 1.2220 14 7 -0.2566 -3.9089 1.3022 15 6 -1.5933 -4.0337 1.4211 16 8 -2.2845 -3.0458 1.5786 17 7 -2.1638 -5.2535 1.3654 18 6 -3.6231 -5.3811 1.3829 19 6 -4.0066 -6.8605 1.3109 20 1 -3.5815 -7.4026 2.1555 21 6 -5.5403 -7.0157 1.2923 22 6 -5.9020 -8.2404 0.4337 23 6 -5.0797 -8.1226 -0.8755 24 16 -3.4325 -7.5895 -0.2655 25 8 -2.9297 -6.5592 -1.1052 26 8 -2.6366 -8.7346 0.0075 27 6 0.3696 -2.5807 1.2508 28 1 -0.4849 0.8401 -0.0004 29 1 2.8896 -3.5933 -0.8710 30 1 2.8534 -3.6171 0.9083 31 1 2.1881 -5.8215 -0.0474 32 1 0.8531 -5.0282 -0.9185 33 1 1.2335 -5.1537 2.1088 34 1 -0.0176 -5.9927 1.1582 35 1 -1.6082 -6.0468 1.3139 36 1 -4.0147 -4.9490 2.3039 37 1 -4.0441 -4.8542 0.5267 38 1 -5.9063 -7.1599 2.3089 39 1 -5.9938 -6.1225 0.8628 40 1 -5.6364 -9.1571 0.9602 41 1 -6.9682 -8.2357 0.2073 42 1 -5.0117 -9.0876 -1.3777 43 1 -5.5104 -7.3706 -1.5366 44 1 -0.4036 -1.8138 1.2035 45 1 0.9799 -2.4297 2.1412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595564831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:55 Heat of formation + Delta-G solvation = -96.399557 kcal Electronic energy + Delta-G solvation = -27630.172802 eV Core-core repulsion = 23775.031689 eV Total energy + Delta-G solvation = -3855.141113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74865 -37.55033 -37.25553 -36.63593 -36.19196 -34.49447 -33.25910 -31.74040 -30.66819 -29.58105 -26.79658 -25.00572 -24.52708 -23.10972 -21.98508 -21.72856 -20.02707 -19.07212 -18.71878 -17.62541 -17.50150 -16.71800 -16.20973 -15.89570 -15.68078 -15.06842 -14.71050 -14.48404 -14.39964 -14.23057 -13.65882 -13.64676 -13.48497 -13.22634 -12.63836 -12.53991 -12.40850 -12.31238 -12.28200 -12.20406 -12.17577 -11.89672 -11.82607 -11.44456 -10.94895 -10.91128 -10.83879 -10.46716 -10.41541 -10.31464 -10.15071 -9.80262 -9.44132 -9.03167 -8.88874 -8.81337 -8.35346 -7.58819 -5.91820 -4.00465 -0.27958 2.20671 3.02238 3.32561 3.36020 3.43197 3.46519 3.62289 3.86835 3.94152 4.10606 4.21691 4.28736 4.40422 4.49905 4.53900 4.77192 5.00673 5.09198 5.27266 5.33795 5.36862 5.38204 5.47001 5.55967 5.61017 5.66387 5.74614 6.05937 6.25380 6.40310 6.64108 6.65743 6.74690 6.88281 7.06906 7.10765 7.40147 7.51721 7.80286 8.00833 8.13124 8.48263 8.58280 9.03295 9.25576 9.64611 11.13335 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.003193 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.186574 B = 8768.317320 C = 9314.128184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.030 0.970 11 C -0.108 4.108 12 C -0.137 4.137 13 C 0.114 3.886 14 N -0.620 5.620 15 C 0.709 3.291 16 O -0.581 6.581 17 N -0.764 5.764 18 C 0.167 3.833 19 C -0.571 4.571 20 H 0.147 0.853 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.592 4.592 24 S 2.371 3.629 25 O -0.910 6.910 26 O -0.936 6.936 27 C 0.130 3.870 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.385 0.615 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -20.079 2.661 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.018 3.982 10 H 0.048 0.952 11 C -0.146 4.146 12 C -0.175 4.175 13 C -0.010 4.010 14 N -0.356 5.356 15 C 0.410 3.590 16 O -0.458 6.458 17 N -0.424 5.424 18 C 0.041 3.959 19 C -0.680 4.680 20 H 0.165 0.835 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.721 4.721 24 S 2.552 3.448 25 O -0.906 6.906 26 O -0.933 6.933 27 C 0.009 3.991 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.228 -19.249 2.378 22.928 hybrid contribution -0.031 0.342 0.292 0.451 sum -12.260 -18.906 2.670 22.691 Atomic orbital electron populations 1.69916 1.05699 1.26607 1.49422 1.25067 0.94875 0.99223 0.94947 0.86540 0.80021 0.83892 0.77551 1.19842 1.21071 1.21033 1.21112 0.92900 0.90113 1.51644 0.92336 1.19008 0.92678 0.92200 0.94279 0.95154 1.21660 0.98489 0.93972 1.00482 1.22029 0.98679 0.99144 0.97636 1.21509 0.93377 0.87323 0.98796 1.47774 1.03408 1.08999 1.75437 1.15767 0.82604 0.82597 0.78006 1.90916 1.61725 1.36298 1.56828 1.45342 1.06253 1.07979 1.82867 1.20693 0.81038 0.89629 1.04533 1.30617 1.06997 1.07953 1.22431 0.83473 1.21961 0.90037 0.99535 1.03143 1.22224 1.02606 0.99125 0.91931 1.30699 1.21760 1.12691 1.06972 1.09904 0.79021 0.76554 0.79320 1.93717 1.76959 1.56523 1.63447 1.93628 1.65302 1.49682 1.84696 1.22201 0.98380 0.80340 0.98173 0.92771 0.93031 0.93223 0.92200 0.91803 0.91908 0.92586 0.78000 0.89607 0.89871 0.88424 0.88960 0.89498 0.88224 0.84632 0.84220 0.85907 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 11.39 55.43 0.63 -25.62 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.42 8.56 -34.44 -0.29 -14.72 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.26 5.11 -26.53 -0.14 -2.40 16 12 C -0.14 -2.42 6.11 -26.45 -0.16 -2.58 16 13 C 0.11 1.95 6.42 -3.71 -0.02 1.93 16 14 N -0.62 -13.34 2.97 -178.50 -0.53 -13.87 16 15 C 0.71 15.26 8.30 -86.92 -0.72 14.54 16 16 O -0.58 -14.83 15.79 5.28 0.08 -14.75 16 17 N -0.76 -12.24 4.82 -65.23 -0.31 -12.55 16 18 C 0.17 2.06 4.57 -4.04 -0.02 2.04 16 19 C -0.57 -4.43 3.30 -26.12 -0.09 -4.52 16 20 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.11 -0.51 5.94 -25.66 -0.15 -0.66 16 22 C -0.12 -0.46 6.48 -25.19 -0.16 -0.62 16 23 C -0.59 -3.25 7.32 38.24 0.28 -2.97 16 24 S 2.37 23.11 5.48 -107.50 -0.59 22.52 16 25 O -0.91 -13.23 16.78 -57.71 -0.97 -14.20 16 26 O -0.94 -11.58 18.15 -57.71 -1.05 -12.63 16 27 C 0.13 3.28 5.39 -3.71 -0.02 3.26 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.80 5.56 -51.93 -0.29 0.51 16 35 H 0.38 5.32 5.61 -40.82 -0.23 5.09 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.11 7.98 -51.93 -0.41 0.69 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.12 3.61 5.15 -51.93 -0.27 3.35 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -38.24 363.47 -11.14 -49.38 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.07 Total: 3.88 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.80 Total: -4.28 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.21 Total: -52.05 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.93 Total: -41.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 23.11 SS G_CDS: -0.59 Total: 22.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.24 -11.14 -49.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595564831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.019 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds