Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48496 * 109.47080 * 270.00664 * 3 2 1 5 5 H 1.48509 * 109.46750 * 30.00368 * 3 2 1 6 6 H 1.48499 * 109.47022 * 150.00123 * 3 2 1 7 7 C 1.37885 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99842 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47251 * 185.27351 * 9 7 2 11 11 C 1.46904 * 110.99823 * 290.90928 * 10 9 7 12 12 C 1.53236 * 109.33920 * 187.25116 * 11 10 9 13 13 N 1.47074 * 108.52388 * 306.17194 * 12 11 10 14 14 C 1.34783 * 120.87988 * 231.19087 * 13 12 11 15 15 O 1.21279 * 119.99589 * 185.66020 * 14 13 12 16 16 C 1.50693 * 120.00134 * 5.65366 * 14 13 12 17 17 H 1.09003 * 109.38777 * 44.12607 * 16 14 13 18 18 C 1.52591 * 109.38384 * 284.43964 * 16 14 13 19 19 C 1.52595 * 110.64140 * 169.85475 * 18 16 14 20 20 C 1.53032 * 109.98270 * 69.98876 * 19 18 16 21 21 S 1.81673 * 108.99807 * 296.34788 * 20 19 18 22 22 O 1.42091 * 108.66555 * 299.97199 * 21 20 19 23 23 O 1.42104 * 108.65920 * 168.63100 * 21 20 19 24 24 C 1.53034 * 109.38496 * 163.91738 * 16 14 13 25 25 C 1.47083 * 118.23956 * 51.45167 * 13 12 11 26 26 C 1.46900 * 110.99982 * 55.20629 * 10 9 7 27 27 H 0.97002 * 120.00152 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46517 * 65.27398 * 9 7 2 29 29 H 1.08999 * 109.47390 * 305.27855 * 9 7 2 30 30 H 1.08999 * 109.49340 * 67.29390 * 11 10 9 31 31 H 1.09002 * 109.49360 * 307.21326 * 11 10 9 32 32 H 1.09002 * 109.63255 * 186.46011 * 12 11 10 33 33 H 1.08999 * 109.62837 * 65.88219 * 12 11 10 34 34 H 1.08999 * 109.24462 * 290.15505 * 18 16 14 35 35 H 1.09004 * 109.24163 * 49.55741 * 18 16 14 36 36 H 1.08995 * 109.37977 * 190.14432 * 19 18 16 37 37 H 1.08992 * 109.38522 * 309.82914 * 19 18 16 38 38 H 1.08997 * 109.55191 * 56.21101 * 20 19 18 39 39 H 1.09001 * 109.54748 * 176.40124 * 20 19 18 40 40 H 1.08999 * 109.55135 * 303.66007 * 24 16 14 41 41 H 1.09000 * 109.55315 * 63.95055 * 24 16 14 42 42 H 1.09002 * 109.62009 * 68.25927 * 25 13 12 43 43 H 1.08999 * 109.63102 * 188.83348 * 25 13 12 44 44 H 1.09002 * 109.49327 * 292.70713 * 26 10 9 45 45 H 1.08995 * 109.48974 * 52.79089 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5733 -0.1289 11 6 3.7155 -3.3480 1.0862 12 6 4.3967 -4.7170 0.9869 13 7 3.9800 -5.3562 -0.2704 14 6 3.4934 -6.6131 -0.2794 15 8 3.2510 -7.1619 -1.3334 16 6 3.2507 -7.3364 1.0202 17 1 2.7641 -6.6616 1.7245 18 6 4.5850 -7.7953 1.6012 19 6 4.4034 -8.3062 3.0275 20 6 3.6373 -9.6309 3.0150 21 16 1.9692 -9.3432 2.3553 22 8 1.3058 -8.4039 3.1900 23 8 1.3588 -10.6005 2.0985 24 6 2.3468 -8.5451 0.7676 25 6 4.1138 -4.5896 -1.5185 26 6 3.4383 -3.2235 -1.3199 27 1 -0.4850 0.8400 0.0004 28 1 3.8751 -0.7645 0.9324 29 1 3.8745 -0.6005 -0.8400 30 1 2.6387 -3.4839 1.1862 31 1 4.0974 -2.8138 1.9562 32 1 4.0956 -5.3379 1.8306 33 1 5.4791 -4.5886 0.9912 34 1 4.9903 -8.5955 0.9819 35 1 5.2821 -6.9573 1.6058 36 1 5.3811 -8.4579 3.4846 37 1 3.8451 -7.5708 3.6068 38 1 4.1606 -10.3489 2.3835 39 1 3.5672 -10.0213 4.0303 40 1 1.4211 -8.2161 0.2955 41 1 2.8585 -9.2534 0.1159 42 1 5.1696 -4.4492 -1.7505 43 1 3.6256 -5.1262 -2.3320 44 1 2.3653 -3.3612 -1.1863 45 1 3.6192 -2.5991 -2.1948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602203049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -94.789513 kcal Electronic energy + Delta-G solvation = -27584.261632 eV Core-core repulsion = 23729.190335 eV Total energy + Delta-G solvation = -3855.071296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51133 -38.01049 -37.37590 -36.65214 -36.27047 -34.60993 -32.49693 -32.26162 -30.77391 -28.83567 -28.04010 -25.93861 -24.60079 -23.17210 -22.40510 -21.61353 -20.24004 -19.19061 -18.82261 -17.65880 -16.89710 -16.88584 -16.29118 -16.04452 -15.72560 -15.47081 -15.16720 -14.61627 -14.59496 -14.37759 -14.15192 -13.95653 -13.62338 -13.48905 -13.22050 -12.55375 -12.51271 -12.44218 -12.36686 -12.26945 -12.17213 -11.90851 -11.78185 -11.46839 -11.39013 -11.34247 -11.07041 -11.06109 -10.71601 -10.62787 -10.51019 -10.39756 -10.09264 -9.68851 -9.57195 -8.67862 -8.57040 -7.39279 -6.18152 -4.19686 -0.28812 2.32858 2.54955 2.99109 3.21651 3.30084 3.32084 3.36196 3.58519 3.99247 4.11714 4.25175 4.30565 4.31937 4.40596 4.62037 4.70074 4.80699 4.95234 5.07087 5.13837 5.15866 5.22635 5.31771 5.36064 5.42099 5.46104 5.53989 5.62670 5.68283 5.77312 5.87746 5.96111 6.24523 6.48003 6.57881 6.66654 6.81590 6.93745 7.38199 7.47383 7.86888 7.89248 8.14067 8.34382 8.83035 9.43608 10.94575 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.003101 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.062765 B = 9028.114977 C = 9473.582367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.156 3.844 10 N -0.534 5.534 11 C 0.043 3.957 12 C 0.104 3.896 13 N -0.603 5.603 14 C 0.526 3.474 15 O -0.543 6.543 16 C -0.100 4.100 17 H 0.117 0.883 18 C -0.136 4.136 19 C -0.108 4.108 20 C -0.606 4.606 21 S 2.417 3.583 22 O -0.931 6.931 23 O -0.942 6.942 24 C -0.584 4.584 25 C 0.115 3.885 26 C 0.049 3.951 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.586 -17.363 5.719 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.092 0.908 9 C 0.029 3.971 10 N -0.257 5.257 11 C -0.087 4.087 12 C -0.019 4.019 13 N -0.336 5.336 14 C 0.312 3.688 15 O -0.420 6.420 16 C -0.122 4.122 17 H 0.135 0.865 18 C -0.174 4.174 19 C -0.146 4.146 20 C -0.735 4.735 21 S 2.599 3.401 22 O -0.928 6.928 23 O -0.939 6.939 24 C -0.713 4.713 25 C -0.007 4.007 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.972 -17.725 5.476 22.079 hybrid contribution 0.064 1.191 -0.279 1.225 sum 12.035 -16.534 5.197 21.101 Atomic orbital electron populations 1.69924 1.06421 1.27149 1.49824 1.24981 0.94691 0.99280 0.94021 0.86779 0.80312 0.83514 0.78648 1.20165 1.21274 1.18890 1.21656 0.90553 0.94712 1.52626 0.90803 1.20179 0.94728 0.85216 0.96927 1.62421 1.57958 1.03876 1.01494 1.22311 0.99440 0.92336 0.94563 1.22123 0.99938 0.94594 0.85231 1.48157 1.62578 1.13424 1.09434 1.20098 0.76969 0.81405 0.90333 1.90676 1.52325 1.66251 1.32773 1.21067 0.97000 0.96115 0.98003 0.86488 1.21798 0.95999 1.03556 0.96049 1.21276 1.02589 0.93523 0.97242 1.30266 1.22812 1.06848 1.13566 1.08084 0.78042 0.75833 0.78116 1.93618 1.70945 1.63408 1.64872 1.93604 1.73505 1.41662 1.85116 1.30169 1.09968 1.08824 1.22321 1.21972 1.01098 0.91824 0.85796 1.22367 0.98107 0.92853 0.94690 0.92559 0.95356 0.95438 0.93279 0.90166 0.89804 0.90616 0.89782 0.88677 0.88863 0.89189 0.84793 0.84643 0.84077 0.83992 0.91251 0.89378 0.92945 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.66 27.37 -169.99 -4.65 16.01 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -5.91 6.70 56.52 0.38 -5.53 16 7 C -0.56 -14.80 8.32 -34.44 -0.29 -15.09 16 8 H 0.07 2.16 6.14 -52.49 -0.32 1.84 16 9 C 0.16 3.48 4.22 -4.98 -0.02 3.46 16 10 N -0.53 -9.96 4.83 -235.47 -1.14 -11.10 16 11 C 0.04 0.70 5.30 -3.70 -0.02 0.68 16 12 C 0.10 1.24 5.38 -3.61 -0.02 1.22 16 13 N -0.60 -8.30 3.00 -172.19 -0.52 -8.82 16 14 C 0.53 7.15 6.90 -10.99 -0.08 7.08 16 15 O -0.54 -9.09 15.55 5.56 0.09 -9.00 16 16 C -0.10 -0.96 1.51 -91.97 -0.14 -1.10 16 17 H 0.12 1.08 6.91 -51.93 -0.36 0.72 16 18 C -0.14 -0.85 4.48 -27.15 -0.12 -0.97 16 19 C -0.11 -0.52 5.73 -26.92 -0.15 -0.67 16 20 C -0.61 -2.93 6.35 37.17 0.24 -2.70 16 21 S 2.42 21.05 5.31 -107.50 -0.57 20.48 16 22 O -0.93 -11.50 17.94 -57.81 -1.04 -12.53 16 23 O -0.94 -11.48 18.10 -57.81 -1.05 -12.53 16 24 C -0.58 -5.29 4.97 37.17 0.18 -5.11 16 25 C 0.12 1.73 6.61 -3.36 -0.02 1.70 16 26 C 0.05 0.89 5.09 -3.46 -0.02 0.87 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.64 7.41 -51.93 -0.38 0.25 16 29 H 0.03 0.62 7.28 -51.93 -0.38 0.24 16 30 H 0.05 0.94 7.18 -51.93 -0.37 0.57 16 31 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 32 H 0.08 0.75 5.01 -51.93 -0.26 0.49 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.09 0.54 6.35 -51.93 -0.33 0.22 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 38 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.14 1.09 8.05 -51.93 -0.42 0.68 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.36 7.10 -51.93 -0.37 1.00 16 44 H 0.05 1.12 6.58 -51.93 -0.34 0.78 16 45 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -36.93 354.67 -10.21 -47.14 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.90 Total: -0.38 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.55 Total: -8.69 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.88 Total: -45.84 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -2.00 Total: -34.06 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.65 Total: 16.01 kcal Atomic # 16 Polarization: 21.05 SS G_CDS: -0.57 Total: 20.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.93 -10.21 -47.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602203049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.648 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds