Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00138 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.47199 * 180.02562 * 13 11 10 15 15 C 1.46406 * 111.00360 * 66.04509 * 14 13 11 16 16 C 1.53212 * 109.80217 * 162.52231 * 15 14 13 17 17 S 1.81803 * 108.56995 * 62.82762 * 16 15 14 18 18 O 1.42105 * 108.68387 * 62.06780 * 17 16 15 19 19 O 1.42097 * 108.68590 * 193.49593 * 17 16 15 20 20 C 1.81653 * 101.13564 * 307.78285 * 17 16 15 21 21 H 1.09001 * 109.57414 * 171.91673 * 20 17 16 22 22 C 1.52938 * 109.62459 * 292.19074 * 20 17 16 23 23 C 1.53054 * 109.28792 * 180.17920 * 22 20 17 24 24 C 1.52956 * 109.62139 * 300.37520 * 23 22 20 25 25 C 1.53020 * 109.66648 * 59.42733 * 24 23 22 26 26 C 1.46642 * 111.00005 * 300.02978 * 14 13 11 27 27 H 1.09003 * 109.61742 * 76.47163 * 26 14 13 28 28 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 30 30 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 31 31 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 32 32 H 1.09007 * 109.47323 * 300.00043 * 13 11 10 33 33 H 1.09000 * 109.47412 * 60.00056 * 13 11 10 34 34 H 1.09000 * 109.41385 * 282.62210 * 15 14 13 35 35 H 1.08996 * 109.41624 * 42.48256 * 15 14 13 36 36 H 1.09004 * 109.62184 * 182.55606 * 16 15 14 37 37 H 1.09002 * 109.61820 * 303.10553 * 16 15 14 38 38 H 1.09004 * 109.49938 * 300.11691 * 22 20 17 39 39 H 1.08998 * 109.50512 * 60.22933 * 22 20 17 40 40 H 1.08994 * 109.44776 * 60.41681 * 23 22 20 41 41 H 1.08995 * 109.44658 * 180.33454 * 23 22 20 42 42 H 1.08993 * 109.43829 * 179.48961 * 24 23 22 43 43 H 1.08999 * 109.43905 * 299.41348 * 24 23 22 44 44 H 1.08999 * 109.51965 * 59.69658 * 25 24 23 45 45 H 1.08998 * 109.52374 * 179.82217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1131 -1.8996 0.0004 13 6 5.8274 -4.2422 -0.0008 14 7 7.2964 -4.2422 -0.0002 15 6 7.8206 -3.6880 1.2495 16 6 9.2901 -4.0871 1.4182 17 16 10.2480 -3.3584 0.0556 18 8 10.1510 -1.9430 0.1369 19 8 11.5306 -3.9694 0.0230 20 6 9.2967 -3.9252 -1.3844 21 1 9.6751 -3.4421 -2.2852 22 6 9.4292 -5.4425 -1.5228 23 6 8.6288 -5.9110 -2.7403 24 6 7.1571 -5.5336 -2.5637 25 6 7.0291 -4.0162 -2.4129 26 6 7.8225 -3.5562 -1.1847 27 1 7.7293 -2.4780 -1.0548 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 -0.8894 30 1 3.8746 -0.6807 0.8905 31 1 3.3696 -3.3125 -0.0009 32 1 5.4640 -4.7566 0.8889 33 1 5.4642 -4.7556 -0.8911 34 1 7.7407 -2.6012 1.2256 35 1 7.2423 -4.0754 2.0883 36 1 9.6645 -3.7116 2.3706 37 1 9.3801 -5.1730 1.3890 38 1 10.4788 -5.7056 -1.6542 39 1 9.0423 -5.9250 -0.6252 40 1 9.0207 -5.4330 -3.6380 41 1 8.7166 -6.9930 -2.8379 42 1 6.5916 -5.8605 -3.4362 43 1 6.7622 -6.0206 -1.6721 44 1 7.4278 -3.5270 -3.3016 45 1 5.9793 -3.7496 -2.2904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753849039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -96.959639 kcal Electronic energy + Delta-G solvation = -28308.974167 eV Core-core repulsion = 24453.808767 eV Total energy + Delta-G solvation = -3855.165400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77367 -38.46422 -37.19011 -36.11141 -35.70168 -34.36126 -32.65490 -32.33276 -30.97943 -29.94280 -28.31358 -26.02105 -23.69493 -22.92478 -22.59535 -21.71415 -20.13403 -19.47992 -18.69583 -17.51194 -17.12787 -16.80588 -16.31321 -16.09671 -15.72273 -15.55503 -15.34858 -14.88022 -14.63199 -14.15771 -14.01944 -13.70708 -13.51124 -13.17333 -12.99323 -12.69554 -12.56040 -12.46757 -12.30715 -12.17536 -12.10355 -11.97933 -11.89356 -11.66094 -11.45973 -11.28260 -11.09178 -10.85455 -10.80668 -10.61318 -10.34161 -10.10261 -9.99385 -9.86043 -9.57014 -8.85381 -8.29988 -8.24528 -6.28430 -4.31456 -0.08388 2.50775 2.98033 3.21730 3.28914 3.36716 3.37028 3.51192 3.80916 3.93210 4.19475 4.27120 4.33882 4.54790 4.62513 4.77916 4.87858 4.91147 5.02712 5.06962 5.08138 5.19616 5.20791 5.28962 5.35657 5.41038 5.51634 5.57390 5.62666 5.77138 5.79334 5.86989 5.96329 6.01323 6.03901 6.24162 6.54436 6.71076 6.74293 6.97269 7.08383 7.29713 8.00542 8.38588 8.64008 8.76855 9.31319 10.83377 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.003547 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.562175 B = 7891.798416 C = 8603.019314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.700 5.700 11 C 0.464 3.536 12 O -0.554 6.554 13 C 0.031 3.969 14 N -0.522 5.522 15 C 0.053 3.947 16 C -0.592 4.592 17 S 2.405 3.595 18 O -0.934 6.934 19 O -0.947 6.947 20 C -0.549 4.549 21 H 0.138 0.862 22 C -0.097 4.097 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.112 4.112 26 C 0.087 3.913 27 H 0.103 0.897 28 H 0.268 0.732 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.397 0.603 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.868 -14.956 -2.027 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.348 5.348 11 C 0.248 3.752 12 O -0.435 6.435 13 C -0.100 4.100 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.723 4.723 17 S 2.589 3.411 18 O -0.931 6.931 19 O -0.944 6.944 20 C -0.659 4.659 21 H 0.156 0.844 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.022 4.022 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.208 -14.087 -1.997 23.107 hybrid contribution -0.980 0.974 0.063 1.383 sum 17.228 -13.113 -1.933 21.737 Atomic orbital electron populations 1.69874 1.06225 1.27513 1.49183 1.24794 0.94780 0.99183 0.93783 0.86827 0.80542 0.83262 0.79092 1.19840 1.20846 1.18557 1.21071 0.88473 0.95213 1.53623 0.90254 1.19507 0.95326 0.78671 0.96806 1.46309 1.05872 1.11202 1.71456 1.21771 0.83607 0.92120 0.77667 1.90626 1.54915 1.46549 1.51413 1.22423 0.87454 0.94362 1.05755 1.61653 1.06242 1.54865 1.01737 1.21907 0.91351 1.01274 0.93035 1.30168 1.09349 1.13956 1.18789 1.08418 0.76690 0.76241 0.79706 1.93624 1.87047 1.26927 1.85505 1.93562 1.35969 1.78820 1.86054 1.30117 1.08954 1.07415 1.19451 0.84409 1.21297 1.01095 0.89810 1.01300 1.21379 0.95395 1.00509 0.97140 1.21535 0.96358 0.95450 1.02172 1.21699 1.00201 0.96613 0.96511 1.21729 0.89763 0.99739 0.90957 0.87991 0.92192 0.95675 0.96154 0.76903 0.87536 0.86718 0.89769 0.88688 0.84736 0.84295 0.90669 0.89445 0.92204 0.91611 0.92155 0.90448 0.91181 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.55 -14.39 9.83 -34.44 -0.34 -14.73 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 C 0.22 5.09 4.50 -5.19 -0.02 5.07 16 10 N -0.70 -12.59 5.55 -61.47 -0.34 -12.93 16 11 C 0.46 7.44 6.50 -10.99 -0.07 7.37 16 12 O -0.55 -10.83 11.98 5.56 0.07 -10.76 16 13 C 0.03 0.33 4.88 -4.98 -0.02 0.31 16 14 N -0.52 -5.38 2.99 -228.22 -0.68 -6.06 16 15 C 0.05 0.57 4.82 -3.98 -0.02 0.55 16 16 C -0.59 -5.20 6.20 37.27 0.23 -4.97 16 17 S 2.41 27.63 4.88 -107.50 -0.53 27.10 16 18 O -0.93 -14.84 18.10 -57.80 -1.05 -15.88 16 19 O -0.95 -12.79 17.66 -57.80 -1.02 -13.81 16 20 C -0.55 -5.38 2.62 -26.62 -0.07 -5.45 16 21 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.10 -0.77 4.82 -26.74 -0.13 -0.90 16 23 C -0.11 -0.78 5.92 -26.73 -0.16 -0.94 16 24 C -0.12 -0.95 5.39 -26.74 -0.14 -1.09 16 25 C -0.11 -1.15 4.82 -26.57 -0.13 -1.28 16 26 C 0.09 1.00 1.53 -67.57 -0.10 0.90 16 27 H 0.10 1.53 5.78 -51.93 -0.30 1.23 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 30 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 31 H 0.40 6.17 8.32 -40.82 -0.34 5.83 16 32 H 0.11 0.91 7.93 -51.93 -0.41 0.49 16 33 H 0.12 1.02 5.06 -51.93 -0.26 0.76 16 34 H 0.08 1.19 6.19 -51.93 -0.32 0.86 16 35 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.14 0.89 7.42 -51.93 -0.39 0.50 16 38 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 39 H 0.09 0.63 6.52 -51.93 -0.34 0.29 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.60 6.40 -51.93 -0.33 0.27 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.82 5.77 -51.93 -0.30 0.52 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -35.07 345.56 -10.00 -45.07 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.69 Total: 3.85 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.08 Total: -13.08 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.25 Total: -44.10 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -2.00 Total: -40.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 27.63 SS G_CDS: -0.53 Total: 27.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.07 -10.00 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753849039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.888 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds