Wall clock time and date at job start Tue Mar 31 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47265 * 2 1 4 4 C 1.53002 * 109.47263 * 239.99499 * 2 1 3 5 5 N 1.46500 * 109.46971 * 119.99807 * 2 1 3 6 6 C 1.34590 * 125.74803 * 74.99960 * 5 2 1 7 7 N 1.30873 * 107.62579 * 179.97438 * 6 5 2 8 8 C 1.34557 * 107.26667 * 359.97438 * 7 6 5 9 9 C 1.47865 * 126.04466 * 180.26199 * 8 7 6 10 10 O 1.21557 * 120.00129 * 179.69260 * 9 8 7 11 11 N 1.34781 * 120.00096 * 359.69106 * 9 8 7 12 12 S 1.65601 * 120.00065 * 180.02562 * 11 9 8 13 13 O 1.42098 * 104.27785 * 181.07391 * 12 11 9 14 14 O 1.42112 * 104.27436 * 308.93033 * 12 11 9 15 15 C 1.81396 * 104.45159 * 64.99856 * 12 11 9 16 16 C 1.52994 * 109.47316 * 180.02562 * 15 12 11 17 17 C 1.50706 * 109.47423 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99698 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00029 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99790 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47113 * 90.00274 * 21 19 17 23 23 H 1.48500 * 109.47164 * 210.00271 * 21 19 17 24 24 H 1.48500 * 109.47370 * 330.00194 * 21 19 17 25 25 N 1.28847 * 125.74900 * 254.97436 * 5 2 1 26 26 H 1.08998 * 109.47277 * 300.00230 * 1 2 3 27 27 H 1.09007 * 109.46830 * 60.00114 * 1 2 3 28 28 H 1.09004 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47153 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47104 * 299.99718 * 3 2 1 31 31 H 1.08998 * 109.47161 * 59.99699 * 3 2 1 32 32 H 1.08996 * 109.47312 * 300.00452 * 4 2 1 33 33 H 1.09007 * 109.46882 * 60.00419 * 4 2 1 34 34 H 1.08997 * 109.47158 * 179.97438 * 4 2 1 35 35 H 1.07996 * 126.18745 * 0.02562 * 6 5 2 36 36 H 0.96997 * 120.00046 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.46988 * 300.00133 * 15 12 11 38 38 H 1.08996 * 109.47004 * 59.99982 * 15 12 11 39 39 H 1.09002 * 109.47499 * 299.99940 * 16 15 12 40 40 H 1.09003 * 109.47657 * 60.00138 * 16 15 12 41 41 H 0.97006 * 119.99940 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0137 -2.0221 1.3923 7 7 2.5282 -2.2504 2.5739 8 6 2.8506 -1.0574 3.1063 9 6 3.4672 -0.8342 4.4316 10 8 3.7183 0.2958 4.8026 11 7 3.7507 -1.8837 5.2284 12 16 4.4406 -1.6337 6.7129 13 8 4.6133 -2.9405 7.2437 14 8 5.5585 -0.7986 6.4436 15 6 3.1802 -0.7271 7.6510 16 6 3.7049 -0.4325 9.0576 17 6 2.6580 0.3213 9.8367 18 1 1.7128 0.5654 9.3749 19 6 2.9066 0.6983 11.1394 20 7 1.9928 1.3557 11.8195 21 14 4.5407 0.2742 11.9389 22 1 5.5098 1.3733 11.6979 23 1 4.3457 0.0977 13.4005 24 1 5.0658 -0.9858 11.3540 25 7 2.5247 -0.1256 2.2375 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4424 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1299 -0.7210 -1.2494 35 1 1.6519 -2.7674 0.6996 36 1 3.5499 -2.7854 4.9326 37 1 2.9547 0.2111 7.1438 38 1 2.2747 -1.3298 7.7194 39 1 3.9307 -1.3704 9.5650 40 1 4.6103 0.1705 8.9889 41 1 2.1675 1.6206 12.7361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813082017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:12 Heat of formation + Delta-G solvation = -19.732237 kcal Electronic energy + Delta-G solvation = -26077.446714 eV Core-core repulsion = 22122.089802 eV Total energy + Delta-G solvation = -3955.356912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.89472 -39.89933 -37.81002 -36.77917 -35.71676 -34.57769 -33.91331 -32.90259 -31.46480 -31.36192 -28.21260 -28.08215 -26.02786 -25.49772 -23.44372 -21.64576 -21.21470 -20.57925 -19.37609 -18.56559 -17.68969 -17.11465 -17.00719 -16.82305 -15.82558 -15.65966 -15.23891 -15.00048 -14.83801 -14.53258 -14.41004 -14.21734 -13.62066 -13.43483 -13.11470 -12.95661 -12.79235 -12.53884 -12.45804 -12.38047 -11.99861 -11.88846 -11.82278 -11.70986 -11.64215 -11.24564 -11.19419 -10.90453 -10.78122 -10.75738 -10.69468 -10.38438 -10.08519 -9.90977 -9.60001 -9.30832 -8.61291 -6.11496 -4.12630 0.37817 1.00023 1.65721 1.71874 2.56554 2.94819 3.31663 3.38295 3.42313 3.51367 3.66836 3.96101 3.97887 4.08339 4.15294 4.34742 4.40626 4.55283 4.73634 4.83703 4.89233 4.92613 4.97629 5.06181 5.16293 5.20079 5.27140 5.45716 5.52825 5.58161 5.58797 5.69371 5.95567 6.13840 6.31121 6.57204 6.85087 6.97837 7.27585 7.58523 7.73592 8.41611 8.89957 9.47680 11.00888 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002762 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.876363 B =10135.405485 C =10819.506614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 C -0.151 4.151 4 C -0.160 4.160 5 N -0.289 5.289 6 C 0.193 3.807 7 N -0.479 5.479 8 C 0.132 3.868 9 C 0.642 3.358 10 O -0.465 6.465 11 N -1.041 6.041 12 S 2.566 3.434 13 O -0.948 6.948 14 O -0.935 6.935 15 C -0.569 4.569 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.870 3.130 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 N -0.234 5.234 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.225 0.775 36 H 0.437 0.563 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -6.817 -30.750 31.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.209 4.209 4 C -0.218 4.218 5 N -0.087 5.087 6 C -0.102 4.102 7 N -0.204 5.204 8 C -0.148 4.148 9 C 0.424 3.576 10 O -0.332 6.332 11 N -0.803 5.803 12 S 2.666 3.334 13 O -0.938 6.938 14 O -0.925 6.925 15 C -0.704 4.704 16 C -0.045 4.045 17 C -0.556 4.556 18 H 0.097 0.903 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.696 3.304 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.186 1.186 25 N -0.074 5.074 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.241 0.759 36 H 0.274 0.726 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.675 -5.815 -29.813 30.492 hybrid contribution -0.176 -0.618 -0.017 0.643 sum -2.851 -6.432 -29.830 30.648 Atomic orbital electron populations 1.22280 0.91449 1.03748 1.04416 1.21248 0.95508 0.94491 0.80395 1.22029 1.02715 0.92064 1.04076 1.22272 1.02787 1.01157 0.95630 1.47870 1.41027 1.06356 1.13407 1.26343 1.01388 0.86477 0.96039 1.71244 1.16338 1.25645 1.07207 1.23423 1.07382 0.86135 0.97877 1.16093 0.75957 0.84023 0.81550 1.91044 1.48172 1.21349 1.72595 1.55149 1.72401 1.16742 1.36034 1.06740 0.77497 0.75764 0.73402 1.93606 1.85590 1.37799 1.76809 1.93612 1.47596 1.69319 1.81975 1.30194 1.15090 1.13822 1.11269 1.19445 0.98421 0.98532 0.88120 1.20821 1.01692 1.35988 0.97146 0.90305 1.24973 0.96856 0.94282 0.96977 1.69884 1.34102 1.38607 1.10771 0.86919 0.84472 0.80057 0.78972 1.19611 1.20779 1.18573 1.74326 1.12495 1.25258 0.95284 0.91003 0.89420 0.91253 0.91129 0.90133 0.90280 0.91053 0.89159 0.91046 0.75881 0.72603 0.84402 0.85198 0.94748 0.95013 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 8.72 37.15 0.32 -0.22 16 2 C 0.17 0.80 1.23 -131.82 -0.16 0.64 16 3 C -0.15 -0.85 8.04 37.16 0.30 -0.55 16 4 C -0.16 -0.34 8.28 37.16 0.31 -0.04 16 5 N -0.29 -2.47 3.17 -49.84 -0.16 -2.63 16 6 C 0.19 1.48 11.71 -90.47 -1.06 0.42 16 7 N -0.48 -5.46 11.09 -12.36 -0.14 -5.60 16 8 C 0.13 1.86 7.96 -156.35 -1.24 0.62 16 9 C 0.64 10.46 7.57 -12.32 -0.09 10.36 16 10 O -0.47 -9.04 15.19 -11.82 -0.18 -9.22 16 11 N -1.04 -15.42 5.60 30.54 0.17 -15.24 16 12 S 2.57 47.28 5.11 -107.50 -0.55 46.73 16 13 O -0.95 -18.51 18.08 -57.54 -1.04 -19.55 16 14 O -0.93 -20.23 17.04 -64.79 -1.10 -21.33 16 15 C -0.57 -11.35 5.82 37.15 0.22 -11.14 16 16 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 17 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 18 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 21 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 N -0.23 -3.03 11.09 32.07 0.36 -2.67 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 32 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 33 H 0.09 0.04 8.14 -51.92 -0.42 -0.38 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.22 0.57 7.53 -52.49 -0.39 0.18 16 36 H 0.44 5.13 8.50 -34.47 -0.29 4.84 16 37 H 0.14 2.74 7.19 -51.92 -0.37 2.37 16 38 H 0.13 2.26 8.14 -51.93 -0.42 1.84 16 39 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 40 H 0.03 0.78 7.57 -51.93 -0.39 0.38 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -39.27 361.84 -8.63 -47.90 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.59 Total: -0.90 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.96 Total: -13.36 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 1.01 Total: -52.98 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.32 Total: -50.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.55 Total: 46.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.27 -8.63 -47.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813082017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.168 kcal (2) G-P(sol) polarization free energy of solvation -39.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds