Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99652 * 2 1 4 4 C 1.53001 * 109.47085 * 179.97438 * 3 2 1 5 5 O 1.45208 * 109.47163 * 65.00186 * 4 3 2 6 6 C 1.34627 * 117.00070 * 179.97438 * 5 4 3 7 7 O 1.21510 * 120.00301 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99966 * 5.12747 * 8 6 5 10 10 C 1.46496 * 120.00393 * 185.12065 * 8 6 5 11 11 S 1.81003 * 109.47369 * 274.95416 * 10 8 6 12 12 C 1.76208 * 100.00056 * 184.98477 * 11 10 8 13 13 N 1.32391 * 126.25564 * 354.95662 * 12 11 10 14 14 N 1.28509 * 110.19812 * 180.02562 * 13 12 11 15 15 C 1.33103 * 109.75135 * 0.02562 * 14 13 12 16 16 C 1.39774 * 126.56554 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99533 * 185.12639 * 16 15 14 18 18 C 1.40084 * 120.00003 * 5.13170 * 16 15 14 19 19 N 1.30810 * 120.00020 * 5.12820 * 18 16 15 20 20 Si 1.86805 * 119.99785 * 185.12784 * 18 16 15 21 21 H 1.48496 * 109.46979 * 265.00053 * 20 18 16 22 22 H 1.48499 * 109.47090 * 24.99656 * 20 18 16 23 23 H 1.48496 * 109.47115 * 144.99871 * 20 18 16 24 24 N 1.36664 * 126.25665 * 175.29106 * 12 11 10 25 25 C 1.46501 * 127.15641 * 359.97438 * 24 12 11 26 26 H 1.08998 * 109.47557 * 60.00572 * 1 2 3 27 27 H 1.09004 * 109.46407 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47418 * 299.99351 * 1 2 3 29 29 H 1.09000 * 109.47636 * 60.00400 * 3 2 1 30 30 H 1.09002 * 109.47622 * 299.99783 * 3 2 1 31 31 H 1.08998 * 109.47338 * 305.00238 * 4 3 2 32 32 H 1.09000 * 109.47053 * 184.99795 * 4 3 2 33 33 H 1.09002 * 109.46654 * 270.00213 * 9 8 6 34 34 H 1.08995 * 109.46875 * 29.99570 * 9 8 6 35 35 H 1.08997 * 109.47164 * 149.99663 * 9 8 6 36 36 H 1.08996 * 109.47348 * 154.95310 * 10 8 6 37 37 H 1.09009 * 109.47114 * 34.95282 * 10 8 6 38 38 H 0.96999 * 119.99936 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.47401 * 270.14642 * 25 24 12 40 40 H 1.09004 * 109.46929 * 30.15027 * 25 24 12 41 41 H 1.09004 * 109.47202 * 150.14252 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9728 0.5696 -1.2398 6 6 5.2975 0.3904 -1.3994 7 8 6.0673 0.7390 -0.5262 8 7 5.7699 -0.1755 -2.5276 9 6 4.8547 -0.4929 -3.6267 10 6 7.1986 -0.4732 -2.6551 11 16 8.0727 1.0012 -3.2367 12 6 9.6918 0.3365 -3.4410 13 7 10.0825 -0.8865 -3.1178 14 7 11.3268 -1.0433 -3.3982 15 6 11.8147 0.0787 -3.9223 16 6 13.1272 0.2954 -4.3514 17 1 13.4310 1.2765 -4.6852 18 6 14.0483 -0.7600 -4.3483 19 7 13.6564 -1.9693 -4.0403 20 14 15.8364 -0.4402 -4.7843 21 1 16.0529 -0.7241 -6.2257 22 1 16.1678 0.9800 -4.5044 23 1 16.7100 -1.3222 -3.9694 24 7 10.7752 0.9911 -3.9561 25 6 10.8250 2.3713 -4.4449 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8507 0.5686 0.8426 32 1 3.9783 2.1767 0.0902 33 1 4.4691 -1.5043 -3.4978 34 1 4.0258 0.2149 -3.6251 35 1 5.3882 -0.4255 -4.5748 36 1 7.3385 -1.2841 -3.3700 37 1 7.5956 -0.7718 -1.6848 38 1 14.2943 -2.7000 -4.0378 39 1 10.5831 2.3893 -5.5076 40 1 10.1027 2.9769 -3.8975 41 1 11.8263 2.7746 -4.2933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882162169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -42.410840 kcal Electronic energy + Delta-G solvation = -25223.410286 eV Core-core repulsion = 21267.069955 eV Total energy + Delta-G solvation = -3956.340330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56963 -40.49840 -38.35664 -36.85795 -35.57402 -33.69380 -33.30744 -31.02610 -29.38814 -28.22316 -26.87405 -26.52946 -26.14556 -25.41634 -23.06274 -21.10265 -20.79492 -20.29285 -18.22779 -17.44819 -17.35297 -17.16643 -16.65830 -16.13939 -15.91463 -15.44093 -15.32439 -14.93316 -14.74258 -14.45074 -14.16864 -13.60946 -13.34517 -13.11926 -12.98676 -12.78420 -12.63969 -12.39355 -12.21805 -12.19834 -11.95162 -11.67777 -11.42815 -11.29495 -10.93369 -10.77650 -10.60483 -10.51532 -10.36494 -10.12050 -9.74275 -9.59762 -8.86368 -8.70608 -8.45215 -8.34197 -6.83898 -6.65767 -4.56667 1.64623 2.13577 2.71214 2.91485 2.95989 3.07255 3.11364 3.32289 3.36042 3.71525 3.87940 4.24159 4.41686 4.52847 4.73164 4.86340 4.93281 4.97632 5.04768 5.09664 5.16446 5.30216 5.32410 5.33015 5.37684 5.57080 5.65542 5.77586 5.90622 6.05972 6.06599 6.17932 6.69969 6.75806 6.89591 7.15416 7.24289 7.48979 7.87772 8.18233 8.19924 8.70452 8.85875 10.27567 10.62472 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.037583 B = 0.002140 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.847873 B =13082.559970 C =13272.774667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.087 3.913 5 O -0.359 6.359 6 C 0.647 3.353 7 O -0.552 6.552 8 N -0.580 5.580 9 C 0.083 3.917 10 C 0.169 3.831 11 S -0.069 6.069 12 C 0.053 3.947 13 N -0.286 5.286 14 N -0.333 5.333 15 C 0.348 3.652 16 C -0.447 4.447 17 H 0.084 0.916 18 C 0.079 3.921 19 N -0.737 5.737 20 Si 0.920 3.080 21 H -0.270 1.270 22 H -0.262 1.262 23 H -0.274 1.274 24 N -0.514 5.514 25 C 0.102 3.898 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.280 0.720 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 6.938 2.186 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.014 4.014 4 C 0.012 3.988 5 O -0.273 6.273 6 C 0.400 3.600 7 O -0.439 6.439 8 N -0.320 5.320 9 C -0.060 4.060 10 C -0.065 4.065 11 S 0.155 5.845 12 C -0.320 4.320 13 N -0.133 5.133 14 N -0.180 5.180 15 C 0.104 3.896 16 C -0.488 4.488 17 H 0.103 0.897 18 C -0.146 4.146 19 N -0.361 5.361 20 Si 0.744 3.256 21 H -0.195 1.195 22 H -0.186 1.186 23 H -0.199 1.199 24 N -0.216 5.216 25 C -0.043 4.043 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.531 6.308 2.899 22.622 hybrid contribution 1.251 0.610 -0.493 1.477 sum -20.280 6.918 2.406 21.562 Atomic orbital electron populations 1.22762 0.80801 1.03034 0.99959 1.87987 1.19843 1.27113 1.95419 1.22641 0.91429 0.85797 1.01576 1.23015 0.92571 0.98882 0.84309 1.86263 1.23010 1.76180 1.41882 1.17989 0.81248 0.77954 0.82762 1.91062 1.57167 1.53539 1.42143 1.46362 1.07410 1.63287 1.14920 1.21887 0.93295 1.01652 0.89118 1.23129 0.78865 0.97420 1.07121 1.84641 0.97159 1.17380 1.85276 1.25085 0.93571 0.96132 1.17202 1.74522 1.09346 1.11765 1.17647 1.75427 0.99114 1.19120 1.24372 1.21612 0.89480 0.83572 0.94938 1.18100 0.90764 0.97676 1.42213 0.89747 1.25792 1.00949 0.94238 0.93656 1.69992 1.36038 0.99972 1.30090 0.86110 0.80898 0.79545 0.79021 1.19482 1.18584 1.19908 1.46026 1.08581 1.12322 1.54689 1.21492 1.02913 0.80984 0.98890 0.93903 0.89454 0.94057 0.90700 0.91952 0.90092 0.89336 0.91891 0.90338 0.90070 0.86821 0.87188 0.90940 0.92469 0.91592 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.67 10.67 -38.79 -0.41 -4.08 16 3 C 0.06 0.46 6.33 37.16 0.24 0.70 16 4 C 0.09 0.88 5.85 37.16 0.22 1.09 16 5 O -0.36 -4.61 9.08 -43.07 -0.39 -5.00 16 6 C 0.65 10.07 8.36 54.06 0.45 10.52 16 7 O -0.55 -10.35 15.85 -19.28 -0.31 -10.65 16 8 N -0.58 -8.36 2.91 -191.97 -0.56 -8.92 16 9 C 0.08 0.85 10.38 59.85 0.62 1.48 16 10 C 0.17 2.89 5.35 59.84 0.32 3.21 16 11 S -0.07 -1.31 22.09 -107.50 -2.38 -3.69 16 12 C 0.05 1.29 8.08 -87.28 -0.71 0.59 16 13 N -0.29 -7.93 11.63 30.89 0.36 -7.57 16 14 N -0.33 -10.08 10.53 31.26 0.33 -9.75 16 15 C 0.35 9.83 7.51 -154.81 -1.16 8.66 16 16 C -0.45 -11.91 9.05 -38.32 -0.35 -12.26 16 17 H 0.08 2.04 7.27 -52.49 -0.38 1.65 16 18 C 0.08 2.03 5.49 -17.29 -0.09 1.94 16 19 N -0.74 -20.30 11.98 55.56 0.67 -19.64 16 20 Si 0.92 18.59 29.57 -169.99 -5.03 13.57 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 24 N -0.51 -12.63 3.26 -123.17 -0.40 -13.03 16 25 C 0.10 1.91 10.88 59.85 0.65 2.56 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.72 7.46 -51.93 -0.39 0.33 16 35 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.11 1.87 8.03 -51.92 -0.42 1.45 16 37 H 0.11 2.12 7.65 -51.91 -0.40 1.72 16 38 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 41 H 0.08 1.37 7.49 -51.93 -0.39 0.98 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -36.34 372.57 -6.94 -43.28 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.74 Total: 0.09 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 1.30 Total: 19.78 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.39 Total: -58.90 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.11 Total: -19.74 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.38 Total: -3.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.34 -6.94 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882162169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.866 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds