Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99652 * 2 1 4 4 C 1.53001 * 109.47085 * 179.97438 * 3 2 1 5 5 O 1.45208 * 109.47163 * 65.00186 * 4 3 2 6 6 C 1.34627 * 117.00070 * 179.97438 * 5 4 3 7 7 O 1.21510 * 120.00301 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99966 * 5.12747 * 8 6 5 10 10 C 1.46496 * 120.00393 * 185.12065 * 8 6 5 11 11 S 1.81003 * 109.47369 * 274.95416 * 10 8 6 12 12 C 1.76208 * 100.00056 * 184.98477 * 11 10 8 13 13 N 1.32391 * 126.25564 * 354.95662 * 12 11 10 14 14 N 1.28509 * 110.19812 * 180.02562 * 13 12 11 15 15 C 1.33103 * 109.75135 * 0.02562 * 14 13 12 16 16 C 1.39774 * 126.56554 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99533 * 185.12639 * 16 15 14 18 18 C 1.40084 * 120.00003 * 5.13170 * 16 15 14 19 19 N 1.30810 * 120.00020 * 5.12820 * 18 16 15 20 20 Si 1.86805 * 119.99785 * 185.12784 * 18 16 15 21 21 H 1.48496 * 109.46979 * 265.00053 * 20 18 16 22 22 H 1.48499 * 109.47090 * 24.99656 * 20 18 16 23 23 H 1.48496 * 109.47115 * 144.99871 * 20 18 16 24 24 N 1.36664 * 126.25665 * 175.29106 * 12 11 10 25 25 C 1.46501 * 127.15641 * 359.97438 * 24 12 11 26 26 H 1.08998 * 109.47557 * 60.00572 * 1 2 3 27 27 H 1.09004 * 109.46407 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47418 * 299.99351 * 1 2 3 29 29 H 1.09000 * 109.47636 * 60.00400 * 3 2 1 30 30 H 1.09002 * 109.47622 * 299.99783 * 3 2 1 31 31 H 1.08998 * 109.47338 * 305.00238 * 4 3 2 32 32 H 1.09000 * 109.47053 * 184.99795 * 4 3 2 33 33 H 1.09002 * 109.46654 * 270.00213 * 9 8 6 34 34 H 1.08995 * 109.46875 * 29.99570 * 9 8 6 35 35 H 1.08997 * 109.47164 * 149.99663 * 9 8 6 36 36 H 1.08996 * 109.47348 * 154.95310 * 10 8 6 37 37 H 1.09009 * 109.47114 * 34.95282 * 10 8 6 38 38 H 0.96999 * 119.99936 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.47401 * 270.14642 * 25 24 12 40 40 H 1.09004 * 109.46929 * 30.15027 * 25 24 12 41 41 H 1.09004 * 109.47202 * 150.14252 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9728 0.5696 -1.2398 6 6 5.2975 0.3904 -1.3994 7 8 6.0673 0.7390 -0.5262 8 7 5.7699 -0.1755 -2.5276 9 6 4.8547 -0.4929 -3.6267 10 6 7.1986 -0.4732 -2.6551 11 16 8.0727 1.0012 -3.2367 12 6 9.6918 0.3365 -3.4410 13 7 10.0825 -0.8865 -3.1178 14 7 11.3268 -1.0433 -3.3982 15 6 11.8147 0.0787 -3.9223 16 6 13.1272 0.2954 -4.3514 17 1 13.4310 1.2765 -4.6852 18 6 14.0483 -0.7600 -4.3483 19 7 13.6564 -1.9693 -4.0403 20 14 15.8364 -0.4402 -4.7843 21 1 16.0529 -0.7241 -6.2257 22 1 16.1678 0.9800 -4.5044 23 1 16.7100 -1.3222 -3.9694 24 7 10.7752 0.9911 -3.9561 25 6 10.8250 2.3713 -4.4449 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8507 0.5686 0.8426 32 1 3.9783 2.1767 0.0902 33 1 4.4691 -1.5043 -3.4978 34 1 4.0258 0.2149 -3.6251 35 1 5.3882 -0.4255 -4.5748 36 1 7.3385 -1.2841 -3.3700 37 1 7.5956 -0.7718 -1.6848 38 1 14.2943 -2.7000 -4.0378 39 1 10.5831 2.3893 -5.5076 40 1 10.1027 2.9769 -3.8975 41 1 11.8263 2.7746 -4.2933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882162169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -67.395357 kcal Electronic energy + Delta-G solvation = -25224.493696 eV Core-core repulsion = 21267.069955 eV Total energy + Delta-G solvation = -3957.423740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47509 -41.71401 -39.05492 -37.85177 -36.81469 -35.62597 -35.15650 -31.77265 -31.35009 -29.45092 -28.23073 -27.63445 -27.36288 -26.92865 -23.83208 -22.82126 -22.54394 -21.79213 -19.37926 -19.25950 -18.51645 -18.24146 -17.81774 -17.39005 -17.06517 -16.71186 -16.58149 -16.23964 -16.08758 -15.84390 -15.53703 -15.02419 -14.67875 -14.32148 -14.05391 -13.92212 -13.83445 -13.80191 -13.31111 -13.23368 -13.15078 -12.94801 -12.75149 -12.62272 -12.30550 -12.17596 -11.98371 -11.80260 -11.72801 -11.71031 -11.42617 -10.66108 -10.59937 -10.46412 -10.29752 -9.99780 -8.59484 -8.55081 -6.58343 0.14291 0.89829 1.09049 1.20049 1.42882 1.59384 1.61622 1.68645 2.19070 2.43509 2.49719 2.69516 2.79027 3.33808 3.73858 3.88314 4.06896 4.09126 4.12423 4.29976 4.33186 4.42214 4.45573 4.51686 4.58668 4.61600 4.62160 4.63618 4.85921 4.87523 4.90379 4.93926 5.01748 5.13779 5.31918 5.55857 5.99617 6.00861 6.19219 6.22238 6.75794 6.91303 7.00830 8.40930 8.61851 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.037583 B = 0.002140 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.847873 B =13082.559970 C =13272.774667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.067 3.933 4 C 0.077 3.923 5 O -0.352 6.352 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.576 5.576 9 C 0.078 3.922 10 C 0.174 3.826 11 S -0.027 6.027 12 C 0.062 3.938 13 N -0.328 5.328 14 N -0.387 5.387 15 C 0.320 3.680 16 C -0.471 4.471 17 H 0.104 0.896 18 C 0.030 3.970 19 N -0.788 5.788 20 Si 1.007 2.993 21 H -0.259 1.259 22 H -0.248 1.248 23 H -0.272 1.272 24 N -0.520 5.520 25 C 0.094 3.906 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.285 0.715 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.467 8.919 1.250 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.010 4.010 4 C 0.003 3.997 5 O -0.266 6.266 6 C 0.400 3.600 7 O -0.481 6.481 8 N -0.315 5.315 9 C -0.063 4.063 10 C -0.061 4.061 11 S 0.196 5.804 12 C -0.313 4.313 13 N -0.172 5.172 14 N -0.234 5.234 15 C 0.073 3.927 16 C -0.511 4.511 17 H 0.122 0.878 18 C -0.191 4.191 19 N -0.412 5.412 20 Si 0.826 3.174 21 H -0.183 1.183 22 H -0.172 1.172 23 H -0.197 1.197 24 N -0.222 5.222 25 C -0.048 4.048 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.734 8.304 1.945 24.281 hybrid contribution 1.321 0.065 -0.148 1.331 sum -21.413 8.369 1.797 23.060 Atomic orbital electron populations 1.22925 0.79071 1.03770 1.01209 1.87932 1.21835 1.28327 1.95722 1.22733 0.89153 0.85514 1.03560 1.23366 0.94665 0.98853 0.82807 1.86291 1.20979 1.76098 1.43206 1.18160 0.81911 0.77475 0.82447 1.91035 1.58300 1.55214 1.43507 1.46430 1.06592 1.62708 1.15808 1.22180 0.93017 1.03042 0.88060 1.22968 0.80440 0.96833 1.05846 1.84450 0.93463 1.17914 1.84560 1.26017 0.95763 0.95504 1.13967 1.74399 1.09042 1.13809 1.19997 1.75289 1.00418 1.21232 1.26429 1.22040 0.90862 0.84134 0.95617 1.18624 0.90749 0.98998 1.42693 0.87792 1.26989 1.06079 0.93442 0.92630 1.70133 1.38190 1.01381 1.31541 0.84838 0.73747 0.79893 0.78970 1.18346 1.17163 1.19690 1.46360 1.07707 1.13907 1.54217 1.21847 1.04422 0.78320 1.00261 0.92862 0.89120 0.92543 0.87831 0.90652 0.91309 0.88373 0.90372 0.88708 0.88961 0.86068 0.89721 0.90453 0.90431 0.89556 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.30 10.67 -145.58 -1.55 -8.85 16 3 C 0.07 0.85 6.33 71.98 0.46 1.30 16 4 C 0.08 1.47 5.85 71.98 0.42 1.89 16 5 O -0.35 -8.61 9.08 -52.71 -0.48 -9.09 16 6 C 0.65 19.71 8.36 129.79 1.09 20.79 16 7 O -0.59 -22.30 15.85 19.81 0.31 -21.99 16 8 N -0.58 -16.03 2.91 -991.69 -2.88 -18.91 16 9 C 0.08 1.43 10.38 127.77 1.33 2.76 16 10 C 0.17 5.98 5.35 127.77 0.68 6.66 16 11 S -0.03 -1.01 22.09 -56.49 -1.25 -2.26 16 12 C 0.06 3.07 8.08 179.18 1.45 4.52 16 13 N -0.33 -18.79 11.63 -56.17 -0.65 -19.44 16 14 N -0.39 -24.41 10.53 -55.02 -0.58 -24.99 16 15 C 0.32 18.46 7.51 133.23 1.00 19.46 16 16 C -0.47 -25.27 9.05 23.09 0.21 -25.06 16 17 H 0.10 4.93 7.27 -2.91 -0.02 4.91 16 18 C 0.03 1.53 5.49 85.29 0.47 1.99 16 19 N -0.79 -44.80 11.98 21.85 0.26 -44.54 16 20 Si 1.01 37.87 29.57 68.60 2.03 39.90 16 21 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 22 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 N -0.52 -25.59 3.26 -543.61 -1.77 -27.36 16 25 C 0.09 3.36 10.88 127.77 1.39 4.75 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.47 7.46 -2.39 -0.02 1.45 16 35 H 0.09 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.12 4.00 8.03 -2.40 -0.02 3.98 16 37 H 0.08 3.38 7.65 -2.39 -0.02 3.36 16 38 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.09 2.70 7.85 -2.38 -0.02 2.68 16 41 H 0.09 2.98 7.49 -2.38 -0.02 2.96 16 Total: -1.00 -82.62 372.57 4.22 -78.40 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.04 Total: 18.57 kcal Atomic # 6 Polarization: 30.83 SS G_CDS: 9.74 Total: 40.57 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -5.62 Total: -135.24 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.72 Total: -39.93 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.25 Total: -2.26 kcal Total: -82.62 4.22 -78.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882162169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.003 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds