Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00180 * 2 1 4 4 H 1.48499 * 109.47123 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46850 * 120.00174 * 3 2 1 7 7 C 1.37881 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99484 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47286 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.47520 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54365 * 68.37361 * 12 11 10 14 14 O 1.42108 * 110.53986 * 291.62407 * 12 11 10 15 15 N 1.65595 * 104.45288 * 180.02562 * 12 11 10 16 16 C 1.47355 * 121.33377 * 237.19067 * 15 12 11 17 17 C 1.52994 * 109.67000 * 127.10096 * 16 15 12 18 18 C 1.53369 * 110.27709 * 52.48909 * 17 16 15 19 19 C 1.52473 * 108.57031 * 300.25861 * 18 17 16 20 20 H 1.09002 * 108.88793 * 303.98253 * 19 18 17 21 21 C 1.52611 * 112.45309 * 182.66497 * 19 18 17 22 22 C 1.53136 * 108.19722 * 172.28534 * 21 19 18 23 23 N 1.45569 * 111.64357 * 46.45950 * 22 21 19 24 24 C 1.34398 * 125.02592 * 343.39296 * 23 22 21 25 25 O 1.21288 * 119.47012 * 184.95985 * 24 23 22 26 26 C 1.46350 * 121.33237 * 57.16783 * 15 12 11 27 27 H 1.08994 * 108.97777 * 117.81486 * 26 15 12 28 28 H 0.97010 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47802 * 60.00358 * 9 7 2 30 30 H 1.09001 * 109.47184 * 299.99951 * 9 7 2 31 31 H 1.09001 * 109.47263 * 60.00318 * 10 9 7 32 32 H 1.08994 * 109.47133 * 299.99550 * 10 9 7 33 33 H 1.09003 * 109.46983 * 59.99721 * 11 10 9 34 34 H 1.09001 * 109.47096 * 300.00079 * 11 10 9 35 35 H 1.09004 * 109.43749 * 7.04189 * 16 15 12 36 36 H 1.09005 * 109.44334 * 247.16413 * 16 15 12 37 37 H 1.09004 * 109.33832 * 292.24045 * 17 16 15 38 38 H 1.09006 * 109.20547 * 172.65202 * 17 16 15 39 39 H 1.09001 * 109.62417 * 180.52939 * 18 17 16 40 40 H 1.09007 * 109.77468 * 60.07103 * 18 17 16 41 41 H 1.09002 * 109.71493 * 291.96517 * 21 19 18 42 42 H 1.09004 * 109.71507 * 52.56845 * 21 19 18 43 43 H 1.09000 * 109.04839 * 167.01801 * 22 21 19 44 44 H 1.09001 * 109.05040 * 285.90308 * 22 21 19 45 45 H 0.96998 * 117.52892 * 164.06091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 16 2.6588 -6.3660 0.0009 13 8 3.3555 -6.4257 1.2379 14 8 3.3556 -6.4269 -1.2361 15 7 1.7084 -7.7221 0.0008 16 6 1.8267 -8.7407 1.0589 17 6 0.4506 -9.0098 1.6709 18 6 -0.5659 -9.3369 0.5701 19 6 -0.6493 -8.1492 -0.3824 20 1 -0.9008 -7.2557 0.1890 21 6 -1.6883 -8.3550 -1.4811 22 6 -1.8299 -7.0425 -2.2572 23 7 -0.5322 -6.4750 -2.5936 24 6 0.6335 -6.8235 -2.0227 25 8 1.6449 -6.2216 -2.3158 26 6 0.7170 -7.9565 -1.0499 27 1 0.9796 -8.8672 -1.5881 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8718 -3.6044 0.8895 32 1 2.8717 -3.6044 -0.8905 33 1 0.8531 -5.0451 -0.8897 34 1 0.8537 -5.0446 0.8903 35 1 2.5044 -8.3820 1.8337 36 1 2.2206 -9.6632 0.6321 37 1 0.1195 -8.1265 2.2171 38 1 0.5224 -9.8530 2.3580 39 1 -1.5438 -9.5174 1.0166 40 1 -0.2444 -10.2231 0.0228 41 1 -1.3597 -9.1468 -2.1542 42 1 -2.6459 -8.6248 -1.0357 43 1 -2.3848 -7.2308 -3.1763 44 1 -2.3839 -6.3275 -1.6490 45 1 -0.5075 -5.7858 -3.2757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882814692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -100.040296 kcal Electronic energy + Delta-G solvation = -28542.643287 eV Core-core repulsion = 24687.344299 eV Total energy + Delta-G solvation = -3855.298988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14264 -38.28133 -36.60215 -36.29384 -35.31126 -34.51657 -32.94592 -32.10801 -31.95303 -29.48775 -27.69595 -25.52894 -24.47539 -23.66759 -22.60686 -20.88038 -20.33461 -19.84799 -18.62802 -17.61761 -17.41740 -16.78760 -16.37718 -15.81688 -15.53065 -15.29961 -14.95943 -14.84086 -14.49975 -14.35060 -14.07375 -13.97684 -13.73971 -13.50194 -13.00410 -12.47445 -12.31736 -12.14105 -12.12773 -11.74995 -11.67893 -11.57114 -11.39698 -11.37307 -11.26901 -11.08915 -10.88965 -10.82112 -10.75203 -10.67161 -10.26294 -9.81464 -9.58093 -9.37387 -9.23728 -9.16178 -8.89951 -8.34626 -6.00298 -4.02346 0.69201 2.18251 2.74153 3.12478 3.36115 3.38924 3.43235 3.95872 4.09614 4.21533 4.26233 4.35888 4.47557 4.67715 4.77596 4.82408 4.89368 4.93563 5.02457 5.14179 5.27840 5.31648 5.35760 5.36039 5.42386 5.45430 5.48662 5.52020 5.64724 5.74446 5.79310 5.96469 6.02804 6.07836 6.31399 6.45585 6.59239 6.65675 7.00455 7.00830 7.64178 7.76396 7.93799 7.98640 8.40696 9.03463 9.61599 11.11071 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003976 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.672032 B = 7041.184076 C = 7793.438589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.099 4.099 11 C -0.611 4.611 12 S 2.600 3.400 13 O -0.975 6.975 14 O -0.920 6.920 15 N -0.993 5.993 16 C 0.119 3.881 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.109 4.109 20 H 0.086 0.914 21 C -0.127 4.127 22 C 0.107 3.893 23 N -0.715 5.715 24 C 0.483 3.517 25 O -0.489 6.489 26 C 0.145 3.855 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -23.660 -1.214 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.138 4.138 11 C -0.742 4.742 12 S 2.697 3.303 13 O -0.966 6.966 14 O -0.910 6.910 15 N -0.830 5.830 16 C -0.006 4.006 17 C -0.176 4.176 18 C -0.144 4.144 19 C -0.129 4.129 20 H 0.104 0.896 21 C -0.166 4.166 22 C -0.017 4.017 23 N -0.370 5.370 24 C 0.267 3.733 25 O -0.364 6.364 26 C 0.034 3.966 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.689 -23.434 -1.184 24.399 hybrid contribution -0.549 1.376 -0.294 1.511 sum -7.239 -22.058 -1.478 23.262 Atomic orbital electron populations 1.69955 1.06078 1.26719 1.50922 1.25007 0.94878 0.99273 0.95177 0.86622 0.79583 0.82844 0.78786 1.20112 1.21272 1.20131 1.21245 0.93250 0.90943 1.50695 0.92455 1.19012 0.93504 0.90468 0.97368 1.21403 0.99254 0.91492 1.01656 1.30833 1.16484 1.16464 1.10456 1.05425 0.75875 0.74884 0.74093 1.93509 1.70688 1.86050 1.46319 1.93660 1.69557 1.84260 1.43481 1.57947 1.53783 1.38149 1.33112 1.21484 0.97945 0.91307 0.89829 1.21947 0.95082 1.02567 0.97984 1.21442 0.99690 0.96994 0.96302 1.21567 0.93359 1.01101 0.96871 0.89560 1.21812 1.00340 0.97122 0.97307 1.21429 0.84159 0.95554 1.00590 1.45598 1.06193 1.42597 1.42573 1.20476 0.84137 0.85133 0.83516 1.91299 1.30902 1.52891 1.61280 1.20446 0.89817 0.97766 0.88556 0.87547 0.92971 0.96332 0.96417 0.92058 0.91525 0.85384 0.86563 0.87906 0.91350 0.91099 0.90391 0.91011 0.91399 0.90575 0.89032 0.90204 0.90958 0.75626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.03 0.94 4.97 -27.89 -0.14 0.80 16 10 C -0.10 -2.27 5.16 -26.73 -0.14 -2.41 16 11 C -0.61 -11.45 5.23 37.16 0.19 -11.26 16 12 S 2.60 47.25 4.83 -107.50 -0.52 46.73 16 13 O -0.98 -19.32 16.31 -57.54 -0.94 -20.26 16 14 O -0.92 -19.89 14.57 -67.67 -0.99 -20.87 16 15 N -0.99 -13.12 3.19 -108.42 -0.35 -13.47 16 16 C 0.12 1.22 6.48 -3.58 -0.02 1.20 16 17 C -0.14 -1.02 6.03 -26.54 -0.16 -1.18 16 18 C -0.11 -0.65 5.40 -26.81 -0.14 -0.79 16 19 C -0.11 -0.83 1.94 -90.94 -0.18 -1.01 16 20 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 21 C -0.13 -0.66 5.54 -26.86 -0.15 -0.81 16 22 C 0.11 0.68 7.12 -4.47 -0.03 0.64 16 23 N -0.71 -7.27 5.45 -61.36 -0.33 -7.61 16 24 C 0.48 6.55 5.12 -11.70 -0.06 6.49 16 25 O -0.49 -9.08 11.06 -20.01 -0.22 -9.30 16 26 C 0.14 1.60 2.63 -69.56 -0.18 1.41 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.13 2.33 4.77 -51.92 -0.25 2.08 16 34 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 35 H 0.10 1.17 6.61 -51.93 -0.34 0.83 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.41 4.10 8.82 -40.82 -0.36 3.74 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -38.45 356.19 -10.94 -49.39 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.25 Total: 0.35 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.42 Total: -21.04 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.06 Total: -47.53 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.15 Total: -50.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.52 Total: 46.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.45 -10.94 -49.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882814692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.654 kcal (2) G-P(sol) polarization free energy of solvation -38.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds