Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00180 * 2 1 4 4 H 1.48499 * 109.47123 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46850 * 120.00174 * 3 2 1 7 7 C 1.37881 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99484 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47286 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.47520 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54365 * 68.37361 * 12 11 10 14 14 O 1.42108 * 110.53986 * 291.62407 * 12 11 10 15 15 N 1.65595 * 104.45288 * 180.02562 * 12 11 10 16 16 C 1.47355 * 121.33377 * 237.19067 * 15 12 11 17 17 C 1.52994 * 109.67000 * 127.10096 * 16 15 12 18 18 C 1.53369 * 110.27709 * 52.48909 * 17 16 15 19 19 C 1.52473 * 108.57031 * 300.25861 * 18 17 16 20 20 H 1.09002 * 108.88793 * 303.98253 * 19 18 17 21 21 C 1.52611 * 112.45309 * 182.66497 * 19 18 17 22 22 C 1.53136 * 108.19722 * 172.28534 * 21 19 18 23 23 N 1.45569 * 111.64357 * 46.45950 * 22 21 19 24 24 C 1.34398 * 125.02592 * 343.39296 * 23 22 21 25 25 O 1.21288 * 119.47012 * 184.95985 * 24 23 22 26 26 C 1.46350 * 121.33237 * 57.16783 * 15 12 11 27 27 H 1.08994 * 108.97777 * 117.81486 * 26 15 12 28 28 H 0.97010 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47802 * 60.00358 * 9 7 2 30 30 H 1.09001 * 109.47184 * 299.99951 * 9 7 2 31 31 H 1.09001 * 109.47263 * 60.00318 * 10 9 7 32 32 H 1.08994 * 109.47133 * 299.99550 * 10 9 7 33 33 H 1.09003 * 109.46983 * 59.99721 * 11 10 9 34 34 H 1.09001 * 109.47096 * 300.00079 * 11 10 9 35 35 H 1.09004 * 109.43749 * 7.04189 * 16 15 12 36 36 H 1.09005 * 109.44334 * 247.16413 * 16 15 12 37 37 H 1.09004 * 109.33832 * 292.24045 * 17 16 15 38 38 H 1.09006 * 109.20547 * 172.65202 * 17 16 15 39 39 H 1.09001 * 109.62417 * 180.52939 * 18 17 16 40 40 H 1.09007 * 109.77468 * 60.07103 * 18 17 16 41 41 H 1.09002 * 109.71493 * 291.96517 * 21 19 18 42 42 H 1.09004 * 109.71507 * 52.56845 * 21 19 18 43 43 H 1.09000 * 109.04839 * 167.01801 * 22 21 19 44 44 H 1.09001 * 109.05040 * 285.90308 * 22 21 19 45 45 H 0.96998 * 117.52892 * 164.06091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 16 2.6588 -6.3660 0.0009 13 8 3.3555 -6.4257 1.2379 14 8 3.3556 -6.4269 -1.2361 15 7 1.7084 -7.7221 0.0008 16 6 1.8267 -8.7407 1.0589 17 6 0.4506 -9.0098 1.6709 18 6 -0.5659 -9.3369 0.5701 19 6 -0.6493 -8.1492 -0.3824 20 1 -0.9008 -7.2557 0.1890 21 6 -1.6883 -8.3550 -1.4811 22 6 -1.8299 -7.0425 -2.2572 23 7 -0.5322 -6.4750 -2.5936 24 6 0.6335 -6.8235 -2.0227 25 8 1.6449 -6.2216 -2.3158 26 6 0.7170 -7.9565 -1.0499 27 1 0.9796 -8.8672 -1.5881 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8718 -3.6044 0.8895 32 1 2.8717 -3.6044 -0.8905 33 1 0.8531 -5.0451 -0.8897 34 1 0.8537 -5.0446 0.8903 35 1 2.5044 -8.3820 1.8337 36 1 2.2206 -9.6632 0.6321 37 1 0.1195 -8.1265 2.2171 38 1 0.5224 -9.8530 2.3580 39 1 -1.5438 -9.5174 1.0166 40 1 -0.2444 -10.2231 0.0228 41 1 -1.3597 -9.1468 -2.1542 42 1 -2.6459 -8.6248 -1.0357 43 1 -2.3848 -7.2308 -3.1763 44 1 -2.3839 -6.3275 -1.6490 45 1 -0.5075 -5.7858 -3.2757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882814692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -129.185639 kcal Electronic energy + Delta-G solvation = -28543.907124 eV Core-core repulsion = 24687.344299 eV Total energy + Delta-G solvation = -3856.562824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02473 -39.21308 -37.91590 -37.27088 -36.81889 -36.50915 -34.21996 -33.74296 -32.69361 -30.19875 -29.69756 -26.35597 -25.69028 -25.09313 -23.51446 -22.42253 -21.25224 -20.73563 -19.79866 -18.86239 -18.63385 -18.29359 -17.82750 -17.26053 -16.57591 -16.52690 -16.31841 -16.00248 -15.74698 -15.35837 -15.24648 -14.80688 -14.59460 -14.54677 -14.34883 -14.08909 -13.73265 -13.45900 -13.11262 -13.06286 -13.01716 -12.86733 -12.79297 -12.69781 -12.57956 -12.47920 -12.25029 -12.08402 -11.84033 -11.79870 -11.59679 -11.43867 -11.37703 -11.04140 -10.61569 -10.61112 -10.09960 -9.97279 -8.26182 -6.37901 -0.72641 1.14944 1.36763 1.40440 1.48400 1.68824 2.14901 2.37166 2.72377 3.06502 3.15862 3.36242 3.53659 3.67554 3.71564 3.78825 3.92675 4.12070 4.18018 4.23122 4.29940 4.35036 4.44961 4.56192 4.59094 4.73926 4.76782 4.80719 4.85333 4.95367 4.97943 5.03059 5.10854 5.22722 5.28225 5.31933 5.36816 5.48125 5.52824 5.54740 5.72681 5.75901 6.15085 6.16896 6.75053 6.99585 7.30995 8.85440 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003976 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.672032 B = 7041.184076 C = 7793.438589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.041 3.959 10 C -0.096 4.096 11 C -0.611 4.611 12 S 2.620 3.380 13 O -0.998 6.998 14 O -0.959 6.959 15 N -0.988 5.988 16 C 0.108 3.892 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.105 4.105 20 H 0.072 0.928 21 C -0.120 4.120 22 C 0.095 3.905 23 N -0.708 5.708 24 C 0.471 3.529 25 O -0.551 6.551 26 C 0.138 3.862 27 H 0.127 0.873 28 H 0.267 0.733 29 H -0.003 1.003 30 H 0.003 0.997 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 -25.577 -0.828 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.135 4.135 11 C -0.741 4.741 12 S 2.717 3.283 13 O -0.988 6.988 14 O -0.948 6.948 15 N -0.828 5.828 16 C -0.015 4.015 17 C -0.174 4.174 18 C -0.138 4.138 19 C -0.125 4.125 20 H 0.091 0.909 21 C -0.158 4.158 22 C -0.027 4.027 23 N -0.359 5.359 24 C 0.256 3.744 25 O -0.431 6.431 26 C 0.029 3.971 27 H 0.145 0.855 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.021 0.979 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.555 -25.360 -0.790 26.775 hybrid contribution -0.092 1.901 -0.442 1.954 sum -8.647 -23.459 -1.232 25.032 Atomic orbital electron populations 1.70064 1.07590 1.28067 1.50985 1.25935 0.95890 1.03172 0.94233 0.85501 0.78417 0.77969 0.79203 1.19413 1.20020 1.19132 1.21659 0.93597 0.92507 1.51736 0.92534 1.18857 0.93687 0.91643 0.95490 1.21195 0.98634 0.92615 1.01078 1.30787 1.16796 1.14970 1.11523 1.04446 0.75720 0.75342 0.72811 1.93470 1.71764 1.86614 1.46999 1.93617 1.71142 1.85049 1.45013 1.57547 1.53950 1.36743 1.34584 1.21833 0.99950 0.90888 0.88866 1.21978 0.93511 1.03152 0.98764 1.21465 1.00410 0.96510 0.95406 1.21631 0.91597 1.01626 0.97693 0.90945 1.21862 1.00902 0.96504 0.96507 1.21817 0.82151 0.96361 1.02387 1.45773 1.06874 1.41888 1.41390 1.21060 0.84124 0.85387 0.83792 1.91267 1.33215 1.55147 1.63426 1.20793 0.91211 0.97112 0.87992 0.85538 0.92465 0.98432 0.97866 0.91938 0.92808 0.84981 0.84803 0.89621 0.89025 0.92207 0.87823 0.88619 0.89643 0.89092 0.86010 0.87377 0.90855 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.56 -33.84 9.11 25.60 0.23 -33.61 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.34 4.97 29.85 0.15 2.49 16 10 C -0.10 -4.66 5.16 30.60 0.16 -4.51 16 11 C -0.61 -23.95 5.23 71.98 0.38 -23.58 16 12 S 2.62 98.74 4.83 -56.49 -0.27 98.47 16 13 O -1.00 -40.81 16.31 -127.65 -2.08 -42.89 16 14 O -0.96 -43.55 14.57 -117.96 -1.72 -45.27 16 15 N -0.99 -25.62 3.19 -496.94 -1.59 -27.21 16 16 C 0.11 2.04 6.48 86.21 0.56 2.60 16 17 C -0.14 -1.61 6.03 30.72 0.19 -1.42 16 18 C -0.10 -0.78 5.40 30.54 0.17 -0.61 16 19 C -0.10 -1.30 1.94 -11.00 -0.02 -1.32 16 20 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 21 C -0.12 -0.75 5.54 30.51 0.17 -0.58 16 22 C 0.10 0.97 7.12 86.60 0.62 1.58 16 23 N -0.71 -14.08 5.45 -466.63 -2.55 -16.62 16 24 C 0.47 12.87 5.12 87.36 0.45 13.32 16 25 O -0.55 -21.52 11.06 21.38 0.24 -21.28 16 26 C 0.14 2.86 2.63 44.02 0.12 2.98 16 27 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.05 2.69 8.14 -2.39 -0.02 2.68 16 33 H 0.13 5.08 4.77 -2.39 -0.01 5.06 16 34 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 35 H 0.09 1.92 6.61 -2.38 -0.02 1.91 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.09 0.38 8.11 -2.39 -0.02 0.36 16 42 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.40 8.37 8.82 -92.71 -0.82 7.55 16 Total: -1.00 -87.52 356.19 -1.87 -89.40 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.17 Total: 16.16 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.61 Total: -41.83 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.85 Total: -100.56 kcal Atomic # 8 Polarization: -105.88 SS G_CDS: -3.56 Total: -109.45 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 98.74 SS G_CDS: -0.27 Total: 98.47 kcal Total: -87.52 -1.87 -89.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882814692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.790 kcal (2) G-P(sol) polarization free energy of solvation -87.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds