Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 120.00073 * 2 1 4 4 H 1.48497 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46793 * 300.00121 * 3 2 1 6 6 H 1.48501 * 109.46712 * 60.00007 * 3 2 1 7 7 C 1.37882 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99507 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47299 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.46977 * 179.97438 * 11 10 9 13 13 O 1.42108 * 110.54432 * 68.37441 * 12 11 10 14 14 O 1.42104 * 110.54473 * 291.62197 * 12 11 10 15 15 N 1.65601 * 104.44969 * 179.97438 * 12 11 10 16 16 C 1.47365 * 121.33736 * 122.85012 * 15 12 11 17 17 C 1.52993 * 109.65166 * 232.86627 * 16 15 12 18 18 C 1.53371 * 110.28377 * 307.50196 * 17 16 15 19 19 C 1.52474 * 108.58855 * 59.74263 * 18 17 16 20 20 H 1.09002 * 108.92407 * 56.07032 * 19 18 17 21 21 C 1.52606 * 112.43384 * 177.40886 * 19 18 17 22 22 C 1.54496 * 107.50723 * 188.14553 * 21 19 18 23 23 N 1.45559 * 111.60421 * 313.14958 * 22 21 19 24 24 C 1.33870 * 124.94818 * 16.18623 * 23 22 21 25 25 O 1.21274 * 119.12361 * 175.19690 * 24 23 22 26 26 C 1.46338 * 121.33223 * 302.82459 * 15 12 11 27 27 H 1.09003 * 108.96035 * 242.19953 * 26 15 12 28 28 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47736 * 60.00093 * 9 7 2 30 30 H 1.09003 * 109.47091 * 299.99154 * 9 7 2 31 31 H 1.09004 * 109.46933 * 59.99275 * 10 9 7 32 32 H 1.09005 * 109.46820 * 299.99987 * 10 9 7 33 33 H 1.08995 * 109.46998 * 59.99790 * 11 10 9 34 34 H 1.09003 * 109.47068 * 299.99400 * 11 10 9 35 35 H 1.08997 * 109.44145 * 352.92386 * 16 15 12 36 36 H 1.09004 * 109.44340 * 112.80954 * 16 15 12 37 37 H 1.09006 * 109.33141 * 67.74615 * 17 16 15 38 38 H 1.08995 * 109.33526 * 187.41284 * 17 16 15 39 39 H 1.09002 * 109.61523 * 300.01217 * 18 17 16 40 40 H 1.08996 * 109.61583 * 179.47299 * 18 17 16 41 41 H 1.09003 * 109.72047 * 307.34425 * 21 19 18 42 42 H 1.09002 * 109.71830 * 67.98473 * 21 19 18 43 43 H 1.09001 * 108.83837 * 192.75097 * 22 21 19 44 44 H 1.08999 * 109.23151 * 73.80663 * 22 21 19 45 45 H 0.97012 * 117.52851 * 196.21333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3658 0.0004 13 8 3.3568 -6.4261 1.2369 14 8 3.3549 -6.4263 -1.2371 15 7 1.7087 -7.7220 0.0019 16 6 1.8269 -8.7418 -1.0553 17 6 0.4504 -9.0118 -1.6659 18 6 -0.5654 -9.3382 -0.5641 19 6 -0.6487 -8.1499 0.3876 20 1 -0.9018 -7.2567 -0.1835 21 6 -1.6859 -8.3567 1.4879 22 6 -1.8248 -7.0214 2.2525 23 7 -0.5251 -6.4555 2.5832 24 6 0.6354 -6.8226 2.0260 25 8 1.6467 -6.2199 2.3171 26 6 0.7182 -7.9560 1.0534 27 1 0.9817 -8.8664 1.5919 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.8720 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8533 -5.0450 -0.8885 34 1 0.8540 -5.0446 0.8915 35 1 2.5039 -8.3837 -1.8307 36 1 2.2212 -9.6637 -0.6276 37 1 0.1186 -8.1289 -2.2125 38 1 0.5191 -9.8561 -2.3518 39 1 -0.2401 -10.2232 -0.0171 40 1 -1.5433 -9.5193 -1.0100 41 1 -2.6442 -8.6265 1.0440 42 1 -1.3557 -9.1483 2.1605 43 1 -2.3801 -7.1992 3.1734 44 1 -2.3759 -6.3107 1.6366 45 1 -0.4978 -5.7599 3.2589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882814693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -99.522421 kcal Electronic energy + Delta-G solvation = -28548.089366 eV Core-core repulsion = 24692.812835 eV Total energy + Delta-G solvation = -3855.276531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15792 -38.28872 -36.58830 -36.26537 -35.30618 -34.51696 -32.95070 -32.11020 -31.96364 -29.42132 -27.69709 -25.52673 -24.49339 -23.67243 -22.61086 -20.87612 -20.33698 -19.86346 -18.62741 -17.61519 -17.41375 -16.79539 -16.38084 -15.82173 -15.52938 -15.27919 -14.95692 -14.83694 -14.49322 -14.34220 -14.07483 -13.96868 -13.73870 -13.49936 -12.97474 -12.49026 -12.32812 -12.14903 -12.12382 -11.74563 -11.67402 -11.57218 -11.39574 -11.37331 -11.27529 -11.09042 -10.88768 -10.85848 -10.71340 -10.66017 -10.25022 -9.82213 -9.57302 -9.37656 -9.24359 -9.14586 -8.89433 -8.35621 -6.00842 -4.02704 0.69442 2.18777 2.76094 3.12907 3.32672 3.39751 3.45953 3.96246 4.10027 4.21781 4.23737 4.34725 4.47403 4.67852 4.77139 4.82596 4.89284 4.94060 5.02851 5.13491 5.27209 5.31726 5.35504 5.36028 5.42336 5.45376 5.48527 5.52178 5.64838 5.74495 5.79343 5.96567 6.02803 6.07978 6.31348 6.45478 6.59190 6.65288 7.00541 7.02009 7.64417 7.76187 7.94708 7.98475 8.40495 9.03682 9.61423 11.10622 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.003978 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.907074 B = 7037.186140 C = 7788.637591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.099 4.099 11 C -0.611 4.611 12 S 2.600 3.400 13 O -0.920 6.920 14 O -0.975 6.975 15 N -0.993 5.993 16 C 0.119 3.881 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.109 4.109 20 H 0.086 0.914 21 C -0.127 4.127 22 C 0.105 3.895 23 N -0.712 5.712 24 C 0.482 3.518 25 O -0.491 6.491 26 C 0.145 3.855 27 H 0.107 0.893 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -23.665 1.233 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.138 4.138 11 C -0.742 4.742 12 S 2.697 3.303 13 O -0.909 6.909 14 O -0.966 6.966 15 N -0.830 5.830 16 C -0.005 4.005 17 C -0.176 4.176 18 C -0.145 4.145 19 C -0.130 4.130 20 H 0.105 0.895 21 C -0.165 4.165 22 C -0.019 4.019 23 N -0.367 5.367 24 C 0.267 3.733 25 O -0.366 6.366 26 C 0.035 3.965 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.677 -23.439 1.199 24.401 hybrid contribution -0.573 1.378 0.297 1.522 sum -7.250 -22.060 1.496 23.269 Atomic orbital electron populations 1.69975 1.06078 1.26498 1.51126 1.25013 0.94876 0.99298 0.95204 0.86510 0.80287 0.83557 0.77550 1.19571 1.20976 1.20971 1.21323 0.93332 0.90919 1.50392 0.92338 1.19025 0.93519 0.90502 0.97379 1.21404 0.99250 0.91493 1.01661 1.30829 1.16484 1.16450 1.10466 1.05432 0.75881 0.74889 0.74093 1.93661 1.69519 1.84257 1.43500 1.93510 1.70730 1.86050 1.46290 1.57944 1.53822 1.38101 1.33103 1.21480 0.97932 0.91277 0.89855 1.21948 0.95093 1.02558 0.97996 1.21451 0.99683 0.97009 0.96318 1.21585 0.93407 1.01085 0.96906 0.89548 1.22055 1.00288 0.96821 0.97337 1.21692 0.84114 0.95420 1.00706 1.45493 1.06123 1.41596 1.43461 1.20345 0.84205 0.85254 0.83536 1.91297 1.31169 1.53088 1.61085 1.20425 0.89832 0.97767 0.88517 0.87592 0.93083 0.96406 0.96317 0.91529 0.92055 0.86574 0.85352 0.87905 0.91354 0.91108 0.90397 0.91402 0.90997 0.89066 0.90470 0.90262 0.90797 0.75537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.36 9.11 -34.44 -0.31 -15.67 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.92 4.97 -27.88 -0.14 0.78 16 10 C -0.10 -2.27 5.16 -26.73 -0.14 -2.41 16 11 C -0.61 -11.45 5.23 37.16 0.19 -11.26 16 12 S 2.60 47.28 4.83 -107.50 -0.52 46.76 16 13 O -0.92 -19.90 14.57 -67.67 -0.99 -20.89 16 14 O -0.98 -19.34 16.31 -57.54 -0.94 -20.28 16 15 N -0.99 -13.13 3.19 -108.42 -0.35 -13.48 16 16 C 0.12 1.22 6.48 -3.57 -0.02 1.20 16 17 C -0.14 -1.02 6.03 -26.54 -0.16 -1.18 16 18 C -0.11 -0.65 5.40 -26.81 -0.14 -0.79 16 19 C -0.11 -0.84 1.93 -90.94 -0.18 -1.01 16 20 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 21 C -0.13 -0.65 5.63 -26.15 -0.15 -0.80 16 22 C 0.10 0.66 7.15 -3.76 -0.03 0.64 16 23 N -0.71 -7.26 5.44 -60.76 -0.33 -7.59 16 24 C 0.48 6.54 5.10 -11.93 -0.06 6.47 16 25 O -0.49 -9.12 11.04 -20.00 -0.22 -9.34 16 26 C 0.15 1.60 2.62 -69.56 -0.18 1.42 16 27 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 34 H 0.13 2.33 4.77 -51.92 -0.25 2.08 16 35 H 0.10 1.17 6.62 -51.93 -0.34 0.83 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.41 4.12 8.81 -40.81 -0.36 3.76 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -38.52 356.22 -10.92 -49.44 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.25 Total: 0.32 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.41 Total: -21.05 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.06 Total: -47.51 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.15 Total: -50.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.52 Total: 46.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.52 -10.92 -49.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882814693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.079 kcal (2) G-P(sol) polarization free energy of solvation -38.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds