Wall clock time and date at job start Tue Mar 31 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 120.00073 * 2 1 4 4 H 1.48497 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46793 * 300.00121 * 3 2 1 6 6 H 1.48501 * 109.46712 * 60.00007 * 3 2 1 7 7 C 1.37882 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99507 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47299 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.46977 * 179.97438 * 11 10 9 13 13 O 1.42108 * 110.54432 * 68.37441 * 12 11 10 14 14 O 1.42104 * 110.54473 * 291.62197 * 12 11 10 15 15 N 1.65601 * 104.44969 * 179.97438 * 12 11 10 16 16 C 1.47365 * 121.33736 * 122.85012 * 15 12 11 17 17 C 1.52993 * 109.65166 * 232.86627 * 16 15 12 18 18 C 1.53371 * 110.28377 * 307.50196 * 17 16 15 19 19 C 1.52474 * 108.58855 * 59.74263 * 18 17 16 20 20 H 1.09002 * 108.92407 * 56.07032 * 19 18 17 21 21 C 1.52606 * 112.43384 * 177.40886 * 19 18 17 22 22 C 1.54496 * 107.50723 * 188.14553 * 21 19 18 23 23 N 1.45559 * 111.60421 * 313.14958 * 22 21 19 24 24 C 1.33870 * 124.94818 * 16.18623 * 23 22 21 25 25 O 1.21274 * 119.12361 * 175.19690 * 24 23 22 26 26 C 1.46338 * 121.33223 * 302.82459 * 15 12 11 27 27 H 1.09003 * 108.96035 * 242.19953 * 26 15 12 28 28 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47736 * 60.00093 * 9 7 2 30 30 H 1.09003 * 109.47091 * 299.99154 * 9 7 2 31 31 H 1.09004 * 109.46933 * 59.99275 * 10 9 7 32 32 H 1.09005 * 109.46820 * 299.99987 * 10 9 7 33 33 H 1.08995 * 109.46998 * 59.99790 * 11 10 9 34 34 H 1.09003 * 109.47068 * 299.99400 * 11 10 9 35 35 H 1.08997 * 109.44145 * 352.92386 * 16 15 12 36 36 H 1.09004 * 109.44340 * 112.80954 * 16 15 12 37 37 H 1.09006 * 109.33141 * 67.74615 * 17 16 15 38 38 H 1.08995 * 109.33526 * 187.41284 * 17 16 15 39 39 H 1.09002 * 109.61523 * 300.01217 * 18 17 16 40 40 H 1.08996 * 109.61583 * 179.47299 * 18 17 16 41 41 H 1.09003 * 109.72047 * 307.34425 * 21 19 18 42 42 H 1.09002 * 109.71830 * 67.98473 * 21 19 18 43 43 H 1.09001 * 108.83837 * 192.75097 * 22 21 19 44 44 H 1.08999 * 109.23151 * 73.80663 * 22 21 19 45 45 H 0.97012 * 117.52851 * 196.21333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3658 0.0004 13 8 3.3568 -6.4261 1.2369 14 8 3.3549 -6.4263 -1.2371 15 7 1.7087 -7.7220 0.0019 16 6 1.8269 -8.7418 -1.0553 17 6 0.4504 -9.0118 -1.6659 18 6 -0.5654 -9.3382 -0.5641 19 6 -0.6487 -8.1499 0.3876 20 1 -0.9018 -7.2567 -0.1835 21 6 -1.6859 -8.3567 1.4879 22 6 -1.8248 -7.0214 2.2525 23 7 -0.5251 -6.4555 2.5832 24 6 0.6354 -6.8226 2.0260 25 8 1.6467 -6.2199 2.3171 26 6 0.7182 -7.9560 1.0534 27 1 0.9817 -8.8664 1.5919 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.8720 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8533 -5.0450 -0.8885 34 1 0.8540 -5.0446 0.8915 35 1 2.5039 -8.3837 -1.8307 36 1 2.2212 -9.6637 -0.6276 37 1 0.1186 -8.1289 -2.2125 38 1 0.5191 -9.8561 -2.3518 39 1 -0.2401 -10.2232 -0.0171 40 1 -1.5433 -9.5193 -1.0100 41 1 -2.6442 -8.6265 1.0440 42 1 -1.3557 -9.1483 2.1605 43 1 -2.3801 -7.1992 3.1734 44 1 -2.3759 -6.3107 1.6366 45 1 -0.4978 -5.7599 3.2589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882814693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:26 Heat of formation + Delta-G solvation = -128.717693 kcal Electronic energy + Delta-G solvation = -28549.355368 eV Core-core repulsion = 24692.812835 eV Total energy + Delta-G solvation = -3856.542533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04322 -39.21455 -37.92063 -37.23654 -36.81043 -36.50992 -34.22132 -33.74820 -32.70487 -30.13252 -29.69660 -26.35455 -25.69128 -25.11289 -23.51659 -22.42239 -21.24537 -20.75477 -19.80025 -18.86239 -18.63914 -18.29120 -17.83663 -17.26219 -16.57763 -16.52132 -16.31025 -16.00671 -15.72852 -15.35945 -15.23265 -14.80341 -14.60463 -14.54444 -14.34858 -14.08170 -13.71574 -13.46035 -13.11335 -13.05953 -13.02231 -12.87510 -12.80211 -12.69270 -12.56598 -12.48430 -12.24811 -12.08733 -11.84871 -11.80389 -11.58854 -11.41657 -11.36916 -11.03782 -10.62199 -10.60580 -10.11010 -9.97619 -8.26718 -6.38227 -0.72498 1.15471 1.36644 1.37043 1.51337 1.70308 2.15650 2.36930 2.72543 3.06062 3.16271 3.36632 3.53882 3.67458 3.71657 3.76479 3.92286 4.12069 4.17907 4.22937 4.30008 4.34707 4.45891 4.56266 4.58551 4.73750 4.76681 4.80818 4.85031 4.95094 4.97758 5.03308 5.11002 5.22853 5.28336 5.31842 5.37086 5.48018 5.52778 5.54686 5.72735 5.75207 6.14966 6.17776 6.75216 7.00499 7.30848 8.85330 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.003978 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.907074 B = 7037.186140 C = 7788.637591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.041 3.959 10 C -0.096 4.096 11 C -0.611 4.611 12 S 2.620 3.380 13 O -0.959 6.959 14 O -0.998 6.998 15 N -0.988 5.988 16 C 0.108 3.892 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.106 4.106 20 H 0.072 0.928 21 C -0.118 4.118 22 C 0.093 3.907 23 N -0.705 5.705 24 C 0.470 3.530 25 O -0.553 6.553 26 C 0.139 3.861 27 H 0.127 0.873 28 H 0.266 0.734 29 H 0.003 0.997 30 H -0.002 1.002 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 -25.572 0.854 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.135 4.135 11 C -0.741 4.741 12 S 2.716 3.284 13 O -0.948 6.948 14 O -0.989 6.989 15 N -0.828 5.828 16 C -0.015 4.015 17 C -0.174 4.174 18 C -0.138 4.138 19 C -0.126 4.126 20 H 0.091 0.909 21 C -0.156 4.156 22 C -0.029 4.029 23 N -0.356 5.356 24 C 0.256 3.744 25 O -0.433 6.433 26 C 0.029 3.971 27 H 0.144 0.856 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.587 -25.353 0.813 26.780 hybrid contribution -0.103 1.903 0.442 1.956 sum -8.690 -23.450 1.255 25.040 Atomic orbital electron populations 1.70075 1.07580 1.27938 1.51154 1.25936 0.95888 1.03178 0.94262 0.85392 0.78907 0.78555 0.78188 1.19087 1.19702 1.19911 1.21715 0.93591 0.92503 1.51487 0.92565 1.18867 0.93694 0.91646 0.95518 1.21196 0.98633 0.92630 1.01069 1.30783 1.16792 1.14942 1.11544 1.04456 0.75731 0.75354 0.72810 1.93617 1.71109 1.85050 1.45034 1.93471 1.71811 1.86617 1.46973 1.57543 1.53989 1.36697 1.34577 1.21829 0.99940 0.90855 0.88892 1.21978 0.93520 1.03143 0.98784 1.21475 1.00403 0.96524 0.95417 1.21649 0.91634 1.01612 0.97735 0.90923 1.22106 1.00848 0.96152 0.96521 1.22078 0.82094 0.96280 1.02498 1.45664 1.06834 1.40887 1.42255 1.20926 0.84170 0.85525 0.83793 1.91265 1.33477 1.55339 1.63249 1.20774 0.91232 0.97120 0.87949 0.85577 0.92472 0.97844 0.98388 0.92826 0.91954 0.84813 0.84925 0.89628 0.89026 0.92219 0.87828 0.89650 0.88604 0.86052 0.88979 0.87467 0.90683 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.56 -33.73 9.11 25.60 0.23 -33.50 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.31 4.97 29.85 0.15 2.46 16 10 C -0.10 -4.67 5.16 30.60 0.16 -4.51 16 11 C -0.61 -23.95 5.23 71.98 0.38 -23.57 16 12 S 2.62 98.85 4.83 -56.49 -0.27 98.57 16 13 O -0.96 -43.60 14.57 -117.96 -1.72 -45.32 16 14 O -1.00 -40.88 16.31 -127.65 -2.08 -42.96 16 15 N -0.99 -25.64 3.19 -496.94 -1.59 -27.22 16 16 C 0.11 2.05 6.48 86.21 0.56 2.61 16 17 C -0.14 -1.61 6.03 30.72 0.19 -1.43 16 18 C -0.10 -0.78 5.40 30.54 0.17 -0.61 16 19 C -0.11 -1.30 1.93 -11.00 -0.02 -1.32 16 20 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 21 C -0.12 -0.73 5.63 30.97 0.17 -0.56 16 22 C 0.09 0.95 7.15 87.07 0.62 1.57 16 23 N -0.71 -14.06 5.44 -465.06 -2.53 -16.58 16 24 C 0.47 12.84 5.10 87.45 0.45 13.29 16 25 O -0.55 -21.61 11.04 21.43 0.24 -21.37 16 26 C 0.14 2.86 2.62 44.02 0.12 2.98 16 27 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 33 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 34 H 0.13 5.09 4.77 -2.39 -0.01 5.08 16 35 H 0.09 1.92 6.62 -2.39 -0.02 1.91 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.09 0.37 8.11 -2.39 -0.02 0.35 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.40 8.42 8.81 -92.70 -0.82 7.60 16 Total: -1.00 -87.66 356.22 -1.84 -89.50 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.17 Total: 16.02 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 3.62 Total: -41.79 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.83 Total: -100.50 kcal Atomic # 8 Polarization: -106.09 SS G_CDS: -3.56 Total: -109.66 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 98.85 SS G_CDS: -0.27 Total: 98.57 kcal Total: -87.66 -1.84 -89.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882814693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.213 kcal (2) G-P(sol) polarization free energy of solvation -87.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds