Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48504 * 109.47156 * 274.07262 * 3 2 1 5 5 H 1.48504 * 109.47142 * 34.07223 * 3 2 1 6 6 H 1.48500 * 109.47481 * 154.07283 * 3 2 1 7 7 C 1.38956 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99631 * 339.68061 * 7 2 1 9 9 N 1.37096 * 120.00211 * 159.68293 * 7 2 1 10 10 C 1.34774 * 120.00137 * 317.66817 * 9 7 2 11 11 O 1.21297 * 120.00110 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00124 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.47245 * 179.97438 * 12 10 9 14 14 C 1.47018 * 120.99536 * 85.00002 * 13 12 10 15 15 C 1.52755 * 109.48709 * 122.53087 * 14 13 12 16 16 C 1.52687 * 110.66206 * 64.31656 * 15 14 13 17 17 C 1.53284 * 109.77398 * 289.71870 * 16 15 14 18 18 S 1.66408 * 120.99327 * 264.72280 * 13 12 10 19 19 O 1.42100 * 104.53531 * 344.38868 * 18 13 12 20 20 O 1.42100 * 104.53228 * 112.79033 * 18 13 12 21 21 C 1.46500 * 119.99578 * 137.66464 * 9 7 2 22 22 C 1.54256 * 110.03688 * 306.61092 * 21 9 7 23 23 C 1.54962 * 104.16125 * 95.75601 * 22 21 9 24 24 C 1.54895 * 102.77529 * 37.88799 * 23 22 21 25 25 C 1.53874 * 110.03230 * 63.83190 * 21 9 7 26 26 H 0.97004 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47158 * 300.00420 * 12 10 9 28 28 H 1.09001 * 109.46718 * 59.99871 * 12 10 9 29 29 H 1.08994 * 109.47248 * 242.54005 * 14 13 12 30 30 H 1.09000 * 109.46856 * 2.53168 * 14 13 12 31 31 H 1.08998 * 109.23907 * 184.62211 * 15 14 13 32 32 H 1.08996 * 109.24122 * 304.01585 * 15 14 13 33 33 H 1.09000 * 109.42599 * 49.81353 * 16 15 14 34 34 H 1.09000 * 109.41925 * 169.62818 * 16 15 14 35 35 H 1.08995 * 109.68269 * 181.48568 * 17 16 15 36 36 H 1.09003 * 109.67734 * 302.00060 * 17 16 15 37 37 H 1.09003 * 110.01334 * 185.21748 * 21 9 7 38 38 H 1.09001 * 110.48946 * 214.40201 * 22 21 9 39 39 H 1.09001 * 110.48463 * 337.04722 * 22 21 9 40 40 H 1.09008 * 110.72099 * 279.57533 * 23 22 21 41 41 H 1.09000 * 110.92629 * 156.29926 * 23 22 21 42 42 H 1.08999 * 110.48303 * 203.40748 * 24 23 22 43 43 H 1.09002 * 110.59431 * 80.82277 * 24 23 22 44 44 H 1.08999 * 110.03322 * 359.95245 * 25 21 9 45 45 H 1.09004 * 110.02838 * 121.37540 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4095 2.0961 -1.3966 5 1 1.4913 2.6263 0.7844 6 1 3.5861 1.4168 0.6121 7 6 2.0089 -1.2034 -0.0005 8 1 1.5192 -2.1097 0.3239 9 7 3.3159 -1.2402 -0.4128 10 6 3.6987 -0.5449 -1.5020 11 8 2.8869 0.1131 -2.1179 12 6 5.1355 -0.5848 -1.9548 13 7 5.2938 0.2457 -3.1513 14 6 5.5243 1.6936 -3.0428 15 6 6.8274 2.0567 -3.7525 16 6 6.7219 1.7755 -5.2496 17 6 6.6921 0.2623 -5.4921 18 16 5.2248 -0.4228 -4.6737 19 8 5.3756 -1.8191 -4.4572 20 8 4.0379 0.1112 -5.2441 21 6 4.2963 -2.0352 0.3308 22 6 4.2700 -1.6458 1.8231 23 6 3.3324 -2.6950 2.4723 24 6 3.6921 -3.9942 1.7094 25 6 3.9287 -3.5276 0.2583 26 1 -0.4850 0.8401 0.0004 27 1 5.7775 -0.2044 -1.1605 28 1 5.4148 -1.6126 -2.1868 29 1 4.6963 2.2292 -3.5070 30 1 5.5935 1.9727 -1.9914 31 1 7.0365 3.1155 -3.5998 32 1 7.6417 1.4662 -3.3327 33 1 5.8074 2.2230 -5.6390 34 1 7.5820 2.2076 -5.7610 35 1 6.6434 0.0629 -6.5626 36 1 7.5894 -0.1942 -5.0742 37 1 5.2937 -1.8760 -0.0791 38 1 5.2699 -1.7108 2.2521 39 1 3.8647 -0.6417 1.9483 40 1 2.2873 -2.4298 2.3122 41 1 3.5439 -2.8007 3.5363 42 1 2.8652 -4.7030 1.7522 43 1 4.5980 -4.4411 2.1191 44 1 3.0203 -3.6603 -0.3294 45 1 4.7477 -4.0926 -0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889085163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -86.276607 kcal Electronic energy + Delta-G solvation = -28876.605814 eV Core-core repulsion = 25021.903665 eV Total energy + Delta-G solvation = -3854.702149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.39212 -37.66596 -37.03927 -36.56298 -35.66309 -34.01765 -33.21822 -31.80699 -29.55556 -28.09752 -27.46536 -26.96085 -24.61822 -23.51161 -21.39347 -20.54581 -19.97976 -19.25069 -18.42348 -17.21850 -17.04526 -16.72854 -16.01048 -15.63170 -15.38557 -15.11081 -14.63467 -14.41575 -14.24133 -14.01934 -13.83709 -13.69502 -13.19440 -12.91711 -12.64684 -12.36018 -12.25644 -11.96223 -11.87560 -11.82210 -11.72489 -11.51386 -11.39518 -11.13084 -10.98125 -10.83999 -10.72563 -10.56633 -10.42921 -10.41350 -10.17264 -10.01634 -9.91388 -9.72427 -9.25993 -8.45011 -8.12581 -7.47864 -6.09772 -3.82740 0.34516 2.70140 3.33541 3.45579 3.69615 3.87834 3.89274 4.11518 4.25761 4.47432 4.59915 4.63423 4.68547 4.93851 5.04030 5.14784 5.16270 5.18683 5.29984 5.31707 5.47764 5.55903 5.58764 5.66326 5.69477 5.73509 5.77355 5.86393 6.03835 6.09944 6.14575 6.18060 6.20519 6.25197 6.43667 6.48645 6.56395 6.66690 6.87358 6.92519 7.07998 7.94621 8.11467 8.88417 9.03763 9.54303 9.92141 10.96028 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.005377 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.731142 B = 5206.539932 C = 5990.662087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.092 3.908 3 Si 0.902 3.098 4 H -0.252 1.252 5 H -0.311 1.311 6 H -0.281 1.281 7 C -0.336 4.336 8 H 0.095 0.905 9 N -0.457 5.457 10 C 0.421 3.579 11 O -0.525 6.525 12 C 0.108 3.892 13 N -0.973 5.973 14 C 0.116 3.884 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.628 4.628 18 S 2.604 3.396 19 O -0.960 6.960 20 O -0.936 6.936 21 C 0.125 3.875 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.132 4.132 26 H 0.270 0.730 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.430 0.935 -3.704 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.116 4.116 3 Si 0.733 3.267 4 H -0.177 1.177 5 H -0.241 1.241 6 H -0.207 1.207 7 C -0.462 4.462 8 H 0.113 0.887 9 N -0.180 5.180 10 C 0.208 3.792 11 O -0.406 6.406 12 C -0.021 4.021 13 N -0.811 5.811 14 C -0.009 4.009 15 C -0.194 4.194 16 C -0.146 4.146 17 C -0.756 4.756 18 S 2.696 3.304 19 O -0.950 6.950 20 O -0.926 6.926 21 C 0.020 3.980 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.171 4.171 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.174 0.744 -4.358 17.734 hybrid contribution 1.029 1.132 0.107 1.534 sum 18.203 1.877 -4.251 18.786 Atomic orbital electron populations 1.69764 1.06812 1.27879 1.45775 1.25258 0.94788 0.99150 0.92455 0.86551 0.78982 0.82833 0.78326 1.17727 1.24093 1.20709 1.18647 0.84419 0.95828 1.47290 0.88730 1.43817 1.08676 1.43462 1.22093 1.20922 0.90339 0.85664 0.82289 1.90604 1.52969 1.42088 1.54932 1.21293 0.96854 0.96381 0.87554 1.56972 1.87986 1.14845 1.21333 1.21471 0.96036 0.80339 1.03090 1.22141 0.99051 1.03623 0.94547 1.21294 1.04773 0.91183 0.97399 1.30596 1.22868 1.08106 1.14078 1.05321 0.76520 0.74158 0.74366 1.93561 1.87350 1.29881 1.84196 1.93639 1.41258 1.79998 1.77656 1.21819 0.91730 0.91719 0.92710 1.22542 0.98274 1.00601 0.94659 1.22502 1.01715 0.94189 0.97246 1.22265 1.00066 0.97660 0.95565 1.22510 1.02083 0.95265 0.97204 0.92053 0.88967 0.87171 0.90240 0.89401 0.89160 0.90466 0.89833 0.89794 0.85171 0.84911 0.91240 0.92540 0.90714 0.89647 0.93038 0.92310 0.92711 0.90251 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.80 13.96 55.50 0.77 -26.02 16 2 C 0.09 2.70 4.82 -17.47 -0.08 2.62 16 3 Si 0.90 23.88 24.90 -169.99 -4.23 19.65 16 4 H -0.25 -7.02 6.28 56.52 0.35 -6.66 16 5 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.34 -9.23 7.36 -14.93 -0.11 -9.34 16 8 H 0.10 2.73 7.01 -52.49 -0.37 2.36 16 9 N -0.46 -10.73 2.03 -106.55 -0.22 -10.95 16 10 C 0.42 10.01 5.97 -10.99 -0.07 9.95 16 11 O -0.53 -14.85 11.95 5.54 0.07 -14.78 16 12 C 0.11 1.91 4.46 -5.19 -0.02 1.88 16 13 N -0.97 -15.91 2.47 -115.42 -0.29 -16.19 16 14 C 0.12 1.58 6.36 -3.89 -0.02 1.56 16 15 C -0.15 -1.36 5.81 -27.02 -0.16 -1.52 16 16 C -0.11 -0.94 5.79 -26.74 -0.15 -1.09 16 17 C -0.63 -5.98 6.56 37.30 0.24 -5.74 16 18 S 2.60 41.79 5.71 -107.50 -0.61 41.18 16 19 O -0.96 -17.60 16.50 -57.50 -0.95 -18.54 16 20 O -0.94 -19.30 18.10 -57.50 -1.04 -20.34 16 21 C 0.13 2.28 3.24 -66.82 -0.22 2.06 16 22 C -0.12 -2.09 6.05 -25.04 -0.15 -2.24 16 23 C -0.12 -1.97 6.56 -24.70 -0.16 -2.13 16 24 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 25 C -0.13 -2.24 6.25 -25.62 -0.16 -2.40 16 26 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 27 H 0.09 1.31 7.62 -51.93 -0.40 0.91 16 28 H 0.11 1.80 6.62 -51.93 -0.34 1.46 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.16 7.92 -51.93 -0.41 0.75 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 33 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.07 1.06 5.85 -51.93 -0.30 0.76 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 40 H 0.08 1.68 6.79 -51.92 -0.35 1.33 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.58 7.28 -51.93 -0.38 1.20 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -38.40 355.08 -9.59 -47.99 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.21 Total: 0.99 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.24 Total: -8.33 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.27 Total: -53.16 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.92 Total: -53.67 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.23 Total: 19.65 kcal Atomic # 16 Polarization: 41.79 SS G_CDS: -0.61 Total: 41.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.40 -9.59 -47.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.283 kcal (2) G-P(sol) polarization free energy of solvation -38.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds