Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48504 * 109.47156 * 274.07262 * 3 2 1 5 5 H 1.48504 * 109.47142 * 34.07223 * 3 2 1 6 6 H 1.48500 * 109.47481 * 154.07283 * 3 2 1 7 7 C 1.38956 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99631 * 339.68061 * 7 2 1 9 9 N 1.37096 * 120.00211 * 159.68293 * 7 2 1 10 10 C 1.34774 * 120.00137 * 317.66817 * 9 7 2 11 11 O 1.21297 * 120.00110 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00124 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.47245 * 179.97438 * 12 10 9 14 14 C 1.47018 * 120.99536 * 85.00002 * 13 12 10 15 15 C 1.52755 * 109.48709 * 122.53087 * 14 13 12 16 16 C 1.52687 * 110.66206 * 64.31656 * 15 14 13 17 17 C 1.53284 * 109.77398 * 289.71870 * 16 15 14 18 18 S 1.66408 * 120.99327 * 264.72280 * 13 12 10 19 19 O 1.42100 * 104.53531 * 344.38868 * 18 13 12 20 20 O 1.42100 * 104.53228 * 112.79033 * 18 13 12 21 21 C 1.46500 * 119.99578 * 137.66464 * 9 7 2 22 22 C 1.54256 * 110.03688 * 306.61092 * 21 9 7 23 23 C 1.54962 * 104.16125 * 95.75601 * 22 21 9 24 24 C 1.54895 * 102.77529 * 37.88799 * 23 22 21 25 25 C 1.53874 * 110.03230 * 63.83190 * 21 9 7 26 26 H 0.97004 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47158 * 300.00420 * 12 10 9 28 28 H 1.09001 * 109.46718 * 59.99871 * 12 10 9 29 29 H 1.08994 * 109.47248 * 242.54005 * 14 13 12 30 30 H 1.09000 * 109.46856 * 2.53168 * 14 13 12 31 31 H 1.08998 * 109.23907 * 184.62211 * 15 14 13 32 32 H 1.08996 * 109.24122 * 304.01585 * 15 14 13 33 33 H 1.09000 * 109.42599 * 49.81353 * 16 15 14 34 34 H 1.09000 * 109.41925 * 169.62818 * 16 15 14 35 35 H 1.08995 * 109.68269 * 181.48568 * 17 16 15 36 36 H 1.09003 * 109.67734 * 302.00060 * 17 16 15 37 37 H 1.09003 * 110.01334 * 185.21748 * 21 9 7 38 38 H 1.09001 * 110.48946 * 214.40201 * 22 21 9 39 39 H 1.09001 * 110.48463 * 337.04722 * 22 21 9 40 40 H 1.09008 * 110.72099 * 279.57533 * 23 22 21 41 41 H 1.09000 * 110.92629 * 156.29926 * 23 22 21 42 42 H 1.08999 * 110.48303 * 203.40748 * 24 23 22 43 43 H 1.09002 * 110.59431 * 80.82277 * 24 23 22 44 44 H 1.08999 * 110.03322 * 359.95245 * 25 21 9 45 45 H 1.09004 * 110.02838 * 121.37540 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4095 2.0961 -1.3966 5 1 1.4913 2.6263 0.7844 6 1 3.5861 1.4168 0.6121 7 6 2.0089 -1.2034 -0.0005 8 1 1.5192 -2.1097 0.3239 9 7 3.3159 -1.2402 -0.4128 10 6 3.6987 -0.5449 -1.5020 11 8 2.8869 0.1131 -2.1179 12 6 5.1355 -0.5848 -1.9548 13 7 5.2938 0.2457 -3.1513 14 6 5.5243 1.6936 -3.0428 15 6 6.8274 2.0567 -3.7525 16 6 6.7219 1.7755 -5.2496 17 6 6.6921 0.2623 -5.4921 18 16 5.2248 -0.4228 -4.6737 19 8 5.3756 -1.8191 -4.4572 20 8 4.0379 0.1112 -5.2441 21 6 4.2963 -2.0352 0.3308 22 6 4.2700 -1.6458 1.8231 23 6 3.3324 -2.6950 2.4723 24 6 3.6921 -3.9942 1.7094 25 6 3.9287 -3.5276 0.2583 26 1 -0.4850 0.8401 0.0004 27 1 5.7775 -0.2044 -1.1605 28 1 5.4148 -1.6126 -2.1868 29 1 4.6963 2.2292 -3.5070 30 1 5.5935 1.9727 -1.9914 31 1 7.0365 3.1155 -3.5998 32 1 7.6417 1.4662 -3.3327 33 1 5.8074 2.2230 -5.6390 34 1 7.5820 2.2076 -5.7610 35 1 6.6434 0.0629 -6.5626 36 1 7.5894 -0.1942 -5.0742 37 1 5.2937 -1.8760 -0.0791 38 1 5.2699 -1.7108 2.2521 39 1 3.8647 -0.6417 1.9483 40 1 2.2873 -2.4298 2.3122 41 1 3.5439 -2.8007 3.5363 42 1 2.8652 -4.7030 1.7522 43 1 4.5980 -4.4411 2.1191 44 1 3.0203 -3.6603 -0.3294 45 1 4.7477 -4.0926 -0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889085163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = -116.903568 kcal Electronic energy + Delta-G solvation = -28877.933898 eV Core-core repulsion = 25021.903665 eV Total energy + Delta-G solvation = -3856.030234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11851 -38.86612 -38.38704 -37.87626 -36.99015 -35.36020 -34.87830 -33.84642 -30.62522 -29.43590 -28.98186 -28.30150 -26.00866 -24.97332 -22.22407 -22.18367 -21.33034 -20.87722 -19.75000 -18.84473 -18.41544 -17.88629 -17.66518 -17.07179 -16.81751 -16.50868 -15.98153 -15.83811 -15.57351 -15.37138 -15.01440 -14.90904 -14.73911 -14.61130 -14.14560 -13.80276 -13.64955 -13.29845 -13.20029 -13.14630 -13.12047 -12.85660 -12.69088 -12.54874 -12.25425 -12.09608 -11.95798 -11.91923 -11.86055 -11.78532 -11.71462 -11.55384 -11.30676 -11.20052 -10.76292 -10.66398 -9.76268 -9.45874 -8.35494 -6.06000 -0.77437 1.19255 1.32289 1.50985 1.53343 1.98317 2.48759 2.68746 2.86062 3.15374 3.20618 3.44181 3.74989 3.76645 3.80522 3.90014 3.95274 4.10664 4.19103 4.26802 4.37307 4.40334 4.53972 4.57024 4.66024 4.73157 4.80506 4.85355 4.85921 4.95550 4.96270 5.00923 5.11609 5.13474 5.20480 5.29495 5.33425 5.46460 5.50413 5.59098 5.72122 5.77017 6.00128 6.85324 7.00360 7.44348 7.96212 8.73833 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.005377 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.731142 B = 5206.539932 C = 5990.662087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.315 1.315 6 H -0.246 1.246 7 C -0.315 4.315 8 H 0.064 0.936 9 N -0.470 5.470 10 C 0.407 3.593 11 O -0.581 6.581 12 C 0.115 3.885 13 N -0.979 5.979 14 C 0.105 3.895 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.576 4.576 18 S 2.571 3.429 19 O -0.996 6.996 20 O -1.008 7.008 21 C 0.113 3.887 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.133 4.133 26 H 0.266 0.734 27 H 0.140 0.860 28 H 0.126 0.874 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.033 0.967 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.180 1.083 -3.527 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.244 1.244 6 H -0.170 1.170 7 C -0.442 4.442 8 H 0.082 0.918 9 N -0.193 5.193 10 C 0.197 3.803 11 O -0.465 6.465 12 C -0.015 4.015 13 N -0.816 5.816 14 C -0.020 4.020 15 C -0.182 4.182 16 C -0.155 4.155 17 C -0.711 4.711 18 S 2.672 3.328 19 O -0.986 6.986 20 O -0.998 6.998 21 C 0.010 3.990 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.146 4.146 25 C -0.171 4.171 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.144 0.856 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.052 0.948 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.918 0.842 -4.117 24.284 hybrid contribution -1.018 0.996 -0.057 1.425 sum 22.900 1.838 -4.174 23.350 Atomic orbital electron populations 1.69883 1.08339 1.28109 1.49653 1.25986 0.95328 1.02318 0.93177 0.85632 0.79576 0.79461 0.76599 1.20741 1.24449 1.16972 1.18461 0.86637 0.94168 1.44967 0.91846 1.44094 1.08184 1.44011 1.23026 1.22282 0.93029 0.83711 0.81321 1.90578 1.55299 1.44276 1.56355 1.21347 0.92390 0.98201 0.89519 1.56998 1.87959 1.15938 1.20718 1.21720 0.97867 0.78591 1.03820 1.22123 0.96439 1.05723 0.93911 1.21501 1.05972 0.90095 0.97897 1.30237 1.17911 1.08404 1.14548 1.05973 0.78327 0.73852 0.74676 1.93499 1.88330 1.32097 1.84696 1.93558 1.47179 1.80530 1.78543 1.22271 0.92103 0.91304 0.93306 1.22580 1.00609 0.98636 0.93883 1.22459 0.98958 0.95204 0.99336 1.22253 1.01666 0.96726 0.93975 1.22519 1.01171 0.95229 0.98227 0.92497 0.84236 0.85613 0.93846 0.89147 0.86603 0.87509 0.91452 0.85327 0.82338 0.80796 0.86891 0.87630 0.93846 0.94570 0.90213 0.92995 0.88617 0.94832 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -61.27 13.96 21.66 0.30 -60.97 16 2 C 0.03 2.13 4.82 84.93 0.41 2.54 16 3 Si 0.96 51.85 24.90 68.60 1.71 53.55 16 4 H -0.28 -16.37 6.28 99.48 0.62 -15.75 16 5 H -0.31 -16.86 7.11 99.48 0.71 -16.15 16 6 H -0.25 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.31 -18.30 7.36 84.04 0.62 -17.68 16 8 H 0.06 4.00 7.01 -2.91 -0.02 3.97 16 9 N -0.47 -22.31 2.03 -609.39 -1.24 -23.55 16 10 C 0.41 19.55 5.97 87.66 0.52 20.07 16 11 O -0.58 -34.44 11.95 -3.08 -0.04 -34.47 16 12 C 0.11 3.76 4.46 85.63 0.38 4.14 16 13 N -0.98 -30.41 2.47 -519.07 -1.28 -31.70 16 14 C 0.11 2.66 6.36 86.20 0.55 3.21 16 15 C -0.14 -1.78 5.81 30.41 0.18 -1.61 16 16 C -0.12 -1.41 5.79 30.59 0.18 -1.23 16 17 C -0.58 -8.01 6.56 72.08 0.47 -7.54 16 18 S 2.57 80.60 5.71 -56.49 -0.32 80.27 16 19 O -1.00 -35.96 16.50 -127.69 -2.11 -38.07 16 20 O -1.01 -43.99 18.10 -127.69 -2.31 -46.30 16 21 C 0.11 3.87 3.24 45.71 0.15 4.01 16 22 C -0.12 -3.73 6.05 31.69 0.19 -3.53 16 23 C -0.12 -3.89 6.56 31.91 0.21 -3.68 16 24 C -0.11 -3.02 6.83 31.67 0.22 -2.80 16 25 C -0.13 -4.30 6.25 31.32 0.20 -4.11 16 26 H 0.27 16.91 8.31 -92.71 -0.77 16.14 16 27 H 0.14 3.25 7.62 -2.39 -0.02 3.23 16 28 H 0.13 3.75 6.62 -2.39 -0.02 3.74 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 2.17 7.92 -2.39 -0.02 2.15 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.80 8.11 -2.39 -0.02 0.78 16 33 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 2.87 5.85 -2.39 -0.01 2.86 16 38 H 0.11 2.31 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.64 7.86 -2.39 -0.02 1.62 16 40 H 0.04 1.49 6.79 -2.38 -0.02 1.47 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.03 1.38 7.28 -2.39 -0.02 1.36 16 45 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -98.09 355.08 -0.12 -98.22 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.90 Total: 11.23 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.27 Total: -8.21 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -2.22 Total: -116.22 kcal Atomic # 8 Polarization: -114.39 SS G_CDS: -4.45 Total: -118.85 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 1.71 Total: 53.55 kcal Atomic # 16 Polarization: 80.60 SS G_CDS: -0.32 Total: 80.27 kcal Total: -98.09 -0.12 -98.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.688 kcal (2) G-P(sol) polarization free energy of solvation -98.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds