Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47265 * 240.00198 * 3 2 1 5 5 H 1.48497 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46820 * 120.00513 * 3 2 1 7 7 C 1.40230 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00001 * 191.66211 * 7 2 1 9 9 C 1.41104 * 120.00357 * 11.66610 * 7 2 1 10 10 C 1.40894 * 120.10428 * 206.80385 * 9 7 2 11 11 C 1.36315 * 119.89016 * 179.69794 * 10 9 7 12 12 C 1.40014 * 120.11034 * 0.25003 * 11 10 9 13 13 C 1.47639 * 119.89612 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00183 * 327.79035 * 13 12 11 15 15 N 1.34779 * 119.99624 * 147.78953 * 13 12 11 16 16 C 1.46550 * 119.36865 * 352.81362 * 15 13 12 17 17 C 1.52746 * 109.52530 * 241.51186 * 16 15 13 18 18 C 1.50932 * 109.10931 * 279.26645 * 17 16 15 19 19 O 1.21284 * 119.55365 * 252.45730 * 18 17 16 20 20 N 1.33800 * 120.89354 * 72.48501 * 18 17 16 21 21 C 1.47307 * 120.12060 * 0.12537 * 20 18 17 22 22 C 1.46007 * 119.36706 * 173.08479 * 15 13 12 23 23 C 1.53477 * 113.82797 * 346.17751 * 22 15 13 24 24 O 1.44280 * 85.38902 * 223.28486 * 23 22 15 25 25 C 1.44290 * 93.44078 * 23.67566 * 24 23 22 26 26 C 1.40015 * 120.20576 * 0.04681 * 12 11 10 27 27 C 1.36315 * 120.10797 * 359.97438 * 26 12 11 28 28 H 0.97000 * 119.99828 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.04928 * 359.96922 * 10 9 7 30 30 H 1.07995 * 119.94539 * 180.27230 * 11 10 9 31 31 H 1.09002 * 109.50829 * 1.46484 * 16 15 13 32 32 H 1.08998 * 109.50771 * 121.60045 * 16 15 13 33 33 H 1.09004 * 109.56370 * 159.33831 * 17 16 15 34 34 H 1.08997 * 109.51922 * 39.16398 * 17 16 15 35 35 H 0.97005 * 119.94123 * 180.15390 * 20 18 17 36 36 H 1.09008 * 109.67333 * 170.26247 * 21 20 18 37 37 H 1.08997 * 109.70475 * 49.74836 * 21 20 18 38 38 H 1.08997 * 113.88518 * 337.39818 * 23 22 15 39 39 H 1.09002 * 113.88651 * 109.17315 * 23 22 15 40 40 H 1.08999 * 113.89240 * 222.20929 * 25 24 23 41 41 H 1.09013 * 114.00633 * 90.44768 * 25 24 23 42 42 H 1.07998 * 119.94740 * 179.97438 * 26 12 11 43 43 H 1.08008 * 120.05162 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6962 1.2125 7 6 2.0075 -1.2145 -0.0005 8 1 3.0708 -1.2243 0.1885 9 6 1.3239 -2.4237 -0.2482 10 6 1.8177 -3.6348 0.2758 11 6 1.1504 -4.7996 0.0391 12 6 -0.0211 -4.7947 -0.7278 13 6 -0.7404 -6.0589 -0.9808 14 8 -0.1223 -7.1017 -1.0749 15 7 -2.0822 -6.0570 -1.1075 16 6 -2.8280 -4.8252 -0.8357 17 6 -3.7907 -5.0573 0.3272 18 6 -5.0273 -5.7537 -0.1865 19 8 -6.0684 -5.1376 -0.2734 20 7 -4.9908 -7.0418 -0.5468 21 6 -3.7339 -7.8030 -0.4432 22 6 -2.7654 -7.2840 -1.5072 23 6 -1.8265 -8.3639 -2.0621 24 8 -2.8357 -8.5558 -3.0752 25 6 -3.3726 -7.2260 -2.9156 26 6 -0.5123 -3.5945 -1.2559 27 6 0.1484 -2.4247 -1.0248 28 1 -0.4850 0.8401 0.0004 29 1 2.7209 -3.6395 0.8677 30 1 1.5257 -5.7278 0.4440 31 1 -2.1317 -4.0280 -0.5754 32 1 -3.3945 -4.5396 -1.7221 33 1 -4.0680 -4.0998 0.7682 34 1 -3.3082 -5.6797 1.0807 35 1 -5.7933 -7.4750 -0.8773 36 1 -3.9311 -8.8617 -0.6116 37 1 -3.3003 -7.6635 0.5471 38 1 -0.8839 -7.9742 -2.4463 39 1 -1.6979 -9.2198 -1.3995 40 1 -4.4618 -7.1856 -2.9254 41 1 -2.9120 -6.4810 -3.5645 42 1 -1.4160 -3.5956 -1.8472 43 1 -0.2315 -1.4994 -1.4323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893786239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -24.642612 kcal Electronic energy + Delta-G solvation = -29110.343332 eV Core-core repulsion = 25122.869882 eV Total energy + Delta-G solvation = -3987.473450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69899 -39.47929 -39.01111 -37.20505 -35.93990 -34.70288 -33.91758 -31.45116 -30.52832 -29.65232 -28.81271 -26.72952 -26.16302 -25.60368 -24.30057 -22.42661 -21.12432 -20.73838 -19.57534 -18.81222 -17.64267 -17.43244 -17.10210 -16.80359 -16.39225 -16.16691 -15.67184 -15.17573 -14.81845 -14.70749 -14.47676 -13.99392 -13.83551 -13.45928 -13.25441 -13.02367 -12.74767 -12.59623 -12.37879 -12.23430 -12.08165 -12.01945 -11.80170 -11.42654 -11.30739 -11.26268 -11.08607 -10.97247 -10.64943 -10.16159 -9.92503 -9.86754 -9.59703 -9.51383 -9.40715 -8.89998 -8.43434 -7.78592 -7.63391 -7.06478 -4.71201 2.09446 2.50669 2.86422 2.87365 2.91140 2.93380 3.02818 3.07197 3.52291 3.66037 3.69771 4.04572 4.37695 4.46544 4.56327 4.80110 5.02155 5.09022 5.12433 5.24789 5.35158 5.42665 5.46935 5.49904 5.62677 5.83602 5.88178 5.89682 5.99452 6.03978 6.15208 6.20967 6.59461 6.66170 6.70330 6.75231 6.90816 7.01254 7.05150 7.31877 7.41471 7.64634 7.74763 7.81919 7.96785 8.08439 8.30248 8.54372 8.63287 8.69538 9.83542 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.003556 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.080217 B = 7871.575216 C = 8924.006840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.234 4.234 11 C -0.024 4.024 12 C -0.284 4.284 13 C 0.577 3.423 14 O -0.558 6.558 15 N -0.610 5.610 16 C 0.091 3.909 17 C -0.157 4.157 18 C 0.519 3.481 19 O -0.550 6.550 20 N -0.725 5.725 21 C 0.120 3.880 22 C 0.081 3.919 23 C 0.057 3.943 24 O -0.391 6.391 25 C 0.040 3.960 26 C -0.079 4.079 27 C -0.170 4.170 28 H 0.288 0.712 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 -7.903 -0.677 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.254 4.254 11 C -0.043 4.043 12 C -0.288 4.288 13 C 0.374 3.626 14 O -0.440 6.440 15 N -0.344 5.344 16 C -0.031 4.031 17 C -0.198 4.198 18 C 0.306 3.694 19 O -0.427 6.427 20 N -0.378 5.378 21 C -0.006 4.006 22 C -0.007 4.007 23 C -0.019 4.019 24 O -0.310 6.310 25 C -0.039 4.039 26 C -0.098 4.098 27 C -0.189 4.189 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.238 0.762 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.513 -8.070 -0.845 10.405 hybrid contribution -0.120 0.725 0.144 0.749 sum -6.633 -7.345 -0.701 9.921 Atomic orbital electron populations 1.69674 1.07768 1.30155 1.32458 1.26079 0.94931 1.01841 0.91950 0.86213 0.80111 0.79384 0.80310 1.18519 1.19994 1.18682 1.19840 0.96586 0.90588 1.39813 0.89809 1.17803 0.91009 0.92154 0.86643 1.20734 1.03365 0.93089 1.08195 1.20259 0.92436 0.96793 0.94835 1.18777 1.02087 0.91230 1.16741 1.18827 0.80131 0.89631 0.73973 1.90549 1.67356 1.33890 1.52213 1.47835 1.06632 1.09790 1.70170 1.22386 0.95559 0.88860 0.96328 1.22311 0.94145 1.02946 1.00353 1.20779 0.90572 0.81626 0.76408 1.90747 1.32747 1.64664 1.54549 1.46012 1.13016 1.11597 1.67199 1.21893 0.83495 0.96328 0.98878 1.24000 0.94773 0.87356 0.94524 1.24822 0.93010 0.95814 0.88292 1.89700 1.49414 1.29874 1.61968 1.24183 0.99970 0.85874 0.93836 1.20703 0.97697 0.92497 0.98876 1.21123 0.98723 0.96884 1.02208 0.90114 0.88336 0.88432 0.83793 0.91449 0.86980 0.88769 0.76231 0.87890 0.89437 0.85726 0.88917 0.89158 0.89811 0.87954 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.55 10.76 55.56 0.60 -16.95 16 2 C 0.07 1.61 5.25 -17.31 -0.09 1.52 16 3 Si 0.92 16.61 29.58 -169.99 -5.03 11.59 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.28 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.35 9.06 -37.75 -0.34 -10.69 16 8 H 0.08 1.88 7.88 -52.48 -0.41 1.47 16 9 C 0.13 3.01 5.57 -106.80 -0.59 2.41 16 10 C -0.23 -5.20 9.73 -39.27 -0.38 -5.58 16 11 C -0.02 -0.51 9.53 -39.61 -0.38 -0.88 16 12 C -0.28 -5.70 5.41 -104.73 -0.57 -6.27 16 13 C 0.58 10.45 7.15 -12.42 -0.09 10.36 16 14 O -0.56 -10.89 13.04 5.29 0.07 -10.82 16 15 N -0.61 -8.93 2.70 -169.56 -0.46 -9.38 16 16 C 0.09 1.26 4.47 -4.14 -0.02 1.24 16 17 C -0.16 -1.98 5.53 -27.90 -0.15 -2.14 16 18 C 0.52 6.89 7.08 -11.31 -0.08 6.81 16 19 O -0.55 -9.28 17.90 5.55 0.10 -9.18 16 20 N -0.73 -7.56 4.35 -59.91 -0.26 -7.82 16 21 C 0.12 1.20 5.82 -3.63 -0.02 1.18 16 22 C 0.08 1.02 1.07 -131.61 -0.14 0.88 16 23 C 0.06 0.78 6.63 37.36 0.25 1.03 16 24 O -0.39 -5.42 12.41 -35.23 -0.44 -5.86 16 25 C 0.04 0.49 8.33 37.36 0.31 0.80 16 26 C -0.08 -1.57 7.24 -39.61 -0.29 -1.86 16 27 C -0.17 -3.83 8.61 -39.27 -0.34 -4.17 16 28 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 29 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.10 1.94 7.94 -52.49 -0.42 1.53 16 31 H 0.14 2.28 3.66 -52.03 -0.19 2.09 16 32 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 33 H 0.11 1.40 8.13 -51.93 -0.42 0.98 16 34 H 0.09 1.13 7.07 -51.93 -0.37 0.77 16 35 H 0.40 3.61 8.91 -40.82 -0.36 3.25 16 36 H 0.10 0.83 7.97 -51.92 -0.41 0.41 16 37 H 0.09 0.89 7.11 -51.93 -0.37 0.52 16 38 H 0.13 2.05 5.62 -52.00 -0.29 1.76 16 39 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.09 1.00 7.32 -51.93 -0.38 0.62 16 41 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.10 1.79 5.75 -52.49 -0.30 1.49 16 43 H 0.13 2.92 6.10 -52.48 -0.32 2.60 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -27.00 342.52 -8.24 -35.24 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.06 Total: 13.39 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.92 Total: -5.36 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.12 Total: -34.16 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.27 Total: -25.85 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.00 -8.24 -35.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893786239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.600 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds