Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99713 * 3 2 1 5 5 H 1.48494 * 109.47296 * 30.00208 * 3 2 1 6 6 H 1.48504 * 109.46862 * 149.99702 * 3 2 1 7 7 C 1.38810 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64533 * 0.05598 * 9 7 2 11 11 C 1.54912 * 104.83306 * 204.07767 * 10 9 7 12 12 H 1.08995 * 111.03828 * 204.90274 * 11 10 9 13 13 O 1.42903 * 110.99758 * 81.06681 * 11 10 9 14 14 C 1.55149 * 101.58182 * 322.99349 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.13706 * 14 11 10 16 16 C 1.53001 * 110.72077 * 153.85835 * 14 11 10 17 17 N 1.46504 * 109.47036 * 175.00109 * 16 14 11 18 18 C 1.34774 * 119.99981 * 180.02562 * 17 16 14 19 19 O 1.21628 * 120.00334 * 359.97438 * 18 17 16 20 20 C 1.47165 * 119.99978 * 179.97438 * 18 17 16 21 21 C 1.38409 * 126.88091 * 179.68167 * 20 18 17 22 22 C 1.39678 * 105.35588 * 179.91724 * 21 20 18 23 23 N 1.30869 * 107.86310 * 0.35170 * 22 21 20 24 24 N 1.28441 * 110.92476 * 359.77658 * 23 22 21 25 25 C 1.46498 * 125.19264 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.47206 * 120.02058 * 25 24 23 27 27 F 1.39892 * 109.47579 * 240.02415 * 25 24 23 28 28 C 1.47014 * 125.65028 * 179.97438 * 9 7 2 29 29 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.09009 * 110.36844 * 85.24387 * 10 9 7 31 31 H 1.09002 * 110.37005 * 322.91886 * 10 9 7 32 32 H 0.96700 * 114.00311 * 67.80834 * 13 11 10 33 33 H 1.08996 * 109.47758 * 294.99881 * 16 14 11 34 34 H 1.08998 * 109.46845 * 55.00181 * 16 14 11 35 35 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 36 36 H 1.07992 * 127.32329 * 0.03382 * 21 20 18 37 37 H 1.07994 * 126.06766 * 180.16624 * 22 21 20 38 38 H 1.09005 * 109.46919 * 0.02562 * 25 24 23 39 39 H 1.08999 * 109.88292 * 59.56690 * 28 9 7 40 40 H 1.09001 * 109.88362 * 298.40882 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1413 -2.5332 0.0011 11 6 -0.4016 -3.9321 0.6135 12 1 -1.3588 -4.3331 0.2804 13 8 -0.3371 -3.8865 2.0404 14 6 0.7786 -4.7524 0.0294 15 1 0.5465 -5.0985 -0.9778 16 6 1.1231 -5.9308 0.9425 17 7 2.1570 -6.7532 0.3093 18 6 2.6198 -7.8536 0.9349 19 8 2.1793 -8.1636 2.0255 20 6 3.6580 -8.6800 0.2987 21 6 4.2364 -9.8279 0.8120 22 6 5.1552 -10.2432 -0.1545 23 7 5.1100 -9.3888 -1.1448 24 7 4.2483 -8.4646 -0.9143 25 6 3.9450 -7.3494 -1.8145 26 9 2.5942 -7.3957 -2.1758 27 9 4.2128 -6.1396 -1.1651 28 6 1.9320 -3.7274 0.0017 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5267 -2.4874 -1.0175 31 1 -0.5994 -1.7586 0.6161 32 1 -1.0545 -3.3844 2.4507 33 1 1.4916 -5.5553 1.8970 34 1 0.2307 -6.5340 1.1094 35 1 2.5086 -6.5058 -0.5602 36 1 4.0214 -10.3027 1.7579 37 1 5.7922 -11.1131 -0.0939 38 1 4.5632 -7.4262 -2.7091 39 1 2.5585 -3.8506 0.8851 40 1 2.5284 -3.8644 -0.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958096639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -44.878886 kcal Electronic energy + Delta-G solvation = -29526.136644 eV Core-core repulsion = 25015.848905 eV Total energy + Delta-G solvation = -4510.287739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.28923 -48.08890 -42.89875 -39.56754 -38.21153 -35.02547 -34.57056 -33.31038 -32.26456 -31.35956 -29.60989 -27.76503 -26.83184 -25.64855 -24.11340 -22.67790 -22.31235 -20.99128 -20.31465 -19.94608 -18.99135 -18.51115 -17.92295 -17.29932 -16.91711 -16.33511 -15.98974 -15.86627 -15.07240 -14.94057 -14.83548 -14.80671 -14.40175 -14.33933 -14.19039 -13.98699 -13.72200 -13.51133 -13.16012 -12.75913 -12.59892 -12.30658 -11.96991 -11.46817 -11.40192 -11.25279 -10.82726 -10.67449 -10.42267 -10.36141 -10.08904 -10.03597 -9.90662 -9.83111 -9.58030 -9.12322 -9.01700 -8.68776 -6.85096 -5.69619 -3.09578 0.73729 1.22389 2.14037 2.81039 2.98593 3.02024 3.38209 3.43517 3.44999 3.45509 3.92708 4.20652 4.42333 4.45847 4.69370 4.76478 5.05304 5.12921 5.29553 5.37309 5.43107 5.49781 5.59695 5.85460 5.88122 6.00726 6.03265 6.09451 6.30248 6.33982 6.43524 6.62008 6.83888 7.24626 7.27672 7.43623 7.56953 7.74402 7.97451 8.22841 8.36627 9.18043 9.79259 10.43356 11.35312 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.003431 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.703793 B = 8158.399649 C = 8945.647206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.108 4.108 15 H 0.085 0.915 16 C 0.141 3.859 17 N -0.725 5.725 18 C 0.580 3.420 19 O -0.519 6.519 20 C -0.020 4.020 21 C -0.145 4.145 22 C 0.024 3.976 23 N -0.265 5.265 24 N -0.346 5.346 25 C 0.482 3.518 26 F -0.164 7.164 27 F -0.158 7.158 28 C 0.146 3.854 29 H 0.252 0.748 30 H 0.019 0.981 31 H 0.113 0.887 32 H 0.375 0.625 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.390 0.610 36 H 0.173 0.827 37 H 0.199 0.801 38 H 0.183 0.817 39 H 0.028 0.972 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -19.213 -3.873 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.023 3.977 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.127 4.127 15 H 0.103 0.897 16 C 0.018 3.982 17 N -0.385 5.385 18 C 0.364 3.636 19 O -0.393 6.393 20 C -0.144 4.144 21 C -0.174 4.174 22 C -0.156 4.156 23 N -0.094 5.094 24 N -0.145 5.145 25 C 0.348 3.652 26 F -0.146 7.146 27 F -0.139 7.139 28 C 0.020 3.980 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.130 0.870 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.191 0.809 37 H 0.216 0.784 38 H 0.200 0.800 39 H 0.046 0.954 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.385 -19.079 -4.347 20.583 hybrid contribution -0.309 1.256 0.304 1.328 sum 6.076 -17.824 -4.043 19.260 Atomic orbital electron populations 1.69743 1.04900 1.24768 1.58059 1.24760 0.95756 0.97697 1.02508 0.86049 0.78576 0.83234 0.77515 1.21672 1.21637 1.20691 1.19092 0.90538 0.82401 1.42613 0.90483 1.44337 1.01517 0.99714 1.86697 1.22597 0.85742 0.92937 0.98620 1.23200 0.94993 0.98100 0.81455 0.92672 1.86393 1.54350 1.76658 1.18859 1.22513 0.97646 0.94336 0.98199 0.89692 1.21322 0.89732 0.90256 0.96900 1.46785 1.41909 1.26041 1.23744 1.16927 0.80935 0.80616 0.85148 1.90846 1.58262 1.70876 1.19346 1.22160 1.02043 1.01184 0.88985 1.22375 0.97900 0.95131 1.01957 1.23851 1.01199 1.00043 0.90554 1.73112 1.09938 0.99403 1.26916 1.46864 1.30706 1.21619 1.15305 1.21400 0.80996 0.73025 0.89785 1.93103 1.35279 1.95519 1.90678 1.93157 1.92944 1.44411 1.83388 1.21304 0.93239 0.85625 0.97844 0.93752 0.96290 0.86956 0.77759 0.89744 0.91232 0.76610 0.80940 0.78404 0.80000 0.95397 0.96413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.49 10.09 55.49 0.56 -25.93 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 10 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 11 C 0.08 1.55 4.17 -24.59 -0.10 1.45 16 12 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 13 O -0.56 -10.37 12.33 -35.23 -0.43 -10.81 16 14 C -0.11 -1.91 2.89 -88.79 -0.26 -2.17 16 15 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.14 2.36 4.50 -4.04 -0.02 2.34 16 17 N -0.73 -11.10 4.90 -61.47 -0.30 -11.40 16 18 C 0.58 9.11 7.80 -12.64 -0.10 9.01 16 19 O -0.52 -9.51 16.92 5.25 0.09 -9.42 16 20 C -0.02 -0.25 6.85 -82.06 -0.56 -0.82 16 21 C -0.15 -1.51 10.85 -38.98 -0.42 -1.93 16 22 C 0.02 0.20 12.03 -17.42 -0.21 -0.01 16 23 N -0.27 -2.68 11.90 30.59 0.36 -2.31 16 24 N -0.35 -3.82 3.61 -62.39 -0.23 -4.04 16 25 C 0.48 4.39 5.64 59.85 0.34 4.72 16 26 F -0.16 -1.67 15.32 2.25 0.03 -1.64 16 27 F -0.16 -1.82 15.31 2.25 0.03 -1.79 16 28 C 0.15 3.11 6.75 -3.07 -0.02 3.09 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 32 H 0.38 5.67 9.12 45.56 0.42 6.09 16 33 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.39 5.48 2.42 -40.82 -0.10 5.38 16 36 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.18 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -34.88 341.22 -5.66 -40.55 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.71 Total: 8.53 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.62 Total: 11.95 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.18 Total: -59.54 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.35 Total: -20.23 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.07 Total: -3.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.88 -5.66 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.332 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds