Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47323 * 179.72453 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.72035 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.72063 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.88304 * 31.12165 * 10 9 7 12 12 C 1.55155 * 111.00736 * 267.19784 * 10 9 7 13 13 C 1.54319 * 102.94305 * 206.42047 * 12 10 9 14 14 N 1.47025 * 107.27086 * 22.19253 * 13 12 10 15 15 C 1.34776 * 125.65017 * 181.01728 * 14 13 12 16 16 O 1.21280 * 120.00231 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99816 * 0.04717 * 15 14 13 18 18 C 1.52995 * 109.46792 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.38779 * 55.21522 * 18 17 15 20 20 C 1.52589 * 109.38937 * 295.52256 * 18 17 15 21 21 C 1.52582 * 110.64645 * 169.85566 * 20 18 17 22 22 C 1.53046 * 109.98418 * 69.98884 * 21 20 18 23 23 S 1.81671 * 108.99799 * 296.35165 * 22 21 20 24 24 O 1.42101 * 108.66600 * 299.96945 * 23 22 21 25 25 O 1.42097 * 108.66110 * 168.62623 * 23 22 21 26 26 C 1.53047 * 109.38357 * 174.99869 * 18 17 15 27 27 C 1.47419 * 108.70272 * 1.06231 * 14 13 12 28 28 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 29 29 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 30 30 H 1.08999 * 110.71634 * 324.78775 * 12 10 9 31 31 H 1.09000 * 110.71612 * 88.05591 * 12 10 9 32 32 H 1.08996 * 109.88759 * 262.77404 * 13 12 10 33 33 H 1.08997 * 110.00832 * 141.67783 * 13 12 10 34 34 H 1.08993 * 109.47053 * 299.99638 * 17 15 14 35 35 H 1.08996 * 109.46978 * 59.99912 * 17 15 14 36 36 H 1.08999 * 109.23974 * 290.16321 * 20 18 17 37 37 H 1.09007 * 109.23737 * 49.55686 * 20 18 17 38 38 H 1.08998 * 109.38728 * 309.83746 * 21 20 18 39 39 H 1.09000 * 109.38795 * 190.14577 * 21 20 18 40 40 H 1.08997 * 109.54772 * 176.49749 * 22 21 20 41 41 H 1.08994 * 109.62704 * 56.25591 * 22 21 20 42 42 H 1.08996 * 109.54647 * 303.66134 * 26 18 17 43 43 H 1.09003 * 109.54371 * 63.85099 * 26 18 17 44 44 H 1.09010 * 110.36896 * 217.03337 * 27 14 13 45 45 H 1.09001 * 110.37418 * 94.70716 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0067 5 1 1.8965 2.3935 -1.2160 6 1 1.8863 2.3995 1.2091 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 3.0074 -3.5550 0.5429 12 6 2.2748 -4.1803 -1.4274 13 6 2.3933 -5.7060 -1.2279 14 7 1.7389 -6.0315 0.0478 15 6 1.6458 -7.2612 0.5916 16 8 1.0802 -7.4134 1.6536 17 6 2.2449 -8.4470 -0.1198 18 6 2.0020 -9.7125 0.7049 19 1 0.9347 -9.8186 0.8990 20 6 2.7476 -9.6033 2.0317 21 6 2.3302 -10.7257 2.9773 22 6 2.8672 -12.0654 2.4682 23 16 2.1046 -12.4361 0.8615 24 8 0.6958 -12.5085 1.0327 25 8 2.7925 -13.5317 0.2737 26 6 2.4997 -10.9310 -0.0760 27 6 1.2005 -4.7902 0.6332 28 1 -0.4850 0.8400 -0.0041 29 1 0.3555 -2.3881 0.0113 30 1 1.4187 -3.9391 -2.0575 31 1 3.1934 -3.7742 -1.8510 32 1 3.4437 -5.9944 -1.1898 33 1 1.8948 -6.2287 -2.0441 34 1 1.7793 -8.5563 -1.0993 35 1 3.3170 -8.2936 -0.2422 36 1 3.8199 -9.6688 1.8476 37 1 2.5210 -8.6420 2.4930 38 1 1.2423 -10.7686 3.0301 39 1 2.7316 -10.5293 3.9715 40 1 2.6184 -12.8523 3.1803 41 1 3.9494 -12.0062 2.3534 42 1 2.0077 -10.9671 -1.0480 43 1 3.5783 -10.8590 -0.2156 44 1 1.3114 -4.8029 1.7176 45 1 0.1529 -4.6649 0.3596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970428864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -100.014791 kcal Electronic energy + Delta-G solvation = -26412.911181 eV Core-core repulsion = 22557.613299 eV Total energy + Delta-G solvation = -3855.297882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.22207 -38.25911 -37.35365 -36.74017 -36.35547 -34.22477 -33.30282 -31.62762 -29.67926 -29.15930 -27.98752 -27.13586 -23.96382 -23.09342 -22.60214 -21.04847 -20.16910 -19.35907 -18.94191 -17.48472 -17.25592 -17.00952 -16.56517 -16.19671 -15.95259 -15.58934 -15.29311 -14.82731 -14.45457 -14.14957 -13.87940 -13.67470 -13.36057 -13.28716 -13.22564 -12.84284 -12.61490 -12.50317 -12.39065 -12.34572 -12.07775 -11.91892 -11.70126 -11.57363 -11.45416 -11.25501 -11.15589 -10.99771 -10.91098 -10.77571 -10.44581 -10.34846 -10.11108 -9.85340 -9.67176 -9.03757 -8.49660 -7.12186 -5.88739 -3.19716 -0.34300 2.27802 2.64225 3.01737 3.28764 3.36241 3.42045 3.44383 3.56582 4.03908 4.11105 4.25475 4.35852 4.46532 4.48910 4.63866 4.68211 4.88673 4.95948 5.02458 5.10581 5.14022 5.20273 5.26589 5.27701 5.39368 5.50871 5.53632 5.55108 5.64971 5.68714 5.89213 5.89544 5.99814 6.06830 6.16396 6.29207 6.45671 6.53708 6.81521 7.59372 7.63421 8.19517 8.28491 9.40238 9.93711 10.28393 11.33383 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.037696 B = 0.002072 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.603040 B =13507.163214 C =13694.403838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.714 5.714 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.157 4.157 13 C 0.100 3.900 14 N -0.612 5.612 15 C 0.523 3.477 16 O -0.542 6.542 17 C -0.128 4.128 18 C -0.062 4.062 19 H 0.102 0.898 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.602 4.602 23 S 2.416 3.584 24 O -0.935 6.935 25 O -0.947 6.947 26 C -0.602 4.602 27 C 0.096 3.904 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -23.585 0.175 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.198 4.198 13 C -0.023 4.023 14 N -0.346 5.346 15 C 0.312 3.688 16 O -0.420 6.420 17 C -0.168 4.168 18 C -0.081 4.081 19 H 0.120 0.880 20 C -0.181 4.181 21 C -0.145 4.145 22 C -0.732 4.732 23 S 2.599 3.401 24 O -0.932 6.932 25 O -0.944 6.944 26 C -0.731 4.731 27 C -0.027 4.027 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.726 -24.349 0.514 25.550 hybrid contribution 0.714 1.597 -0.079 1.751 sum 8.440 -22.752 0.435 24.271 Atomic orbital electron populations 1.69666 1.05170 1.25863 1.56941 1.24785 0.95542 0.97870 1.02438 0.86099 0.78766 0.83886 0.77265 1.20484 1.21768 1.21744 1.19256 0.91061 0.83765 1.43614 0.90915 1.42275 1.05862 0.99359 1.87888 1.21295 0.94805 0.85737 0.92186 0.91575 1.23434 1.02950 0.91366 1.02042 1.22113 0.96755 0.98263 0.85173 1.48505 1.56146 1.07049 1.22928 1.20181 0.80141 0.83004 0.85487 1.90680 1.44217 1.84626 1.22513 1.21660 1.02974 0.92134 1.00078 1.20661 1.02453 0.91122 0.93911 0.88012 1.21938 0.99883 1.01870 0.94453 1.21240 1.02469 0.89819 1.00960 1.30243 1.13239 1.07657 1.22064 1.08042 0.76234 0.77075 0.78789 1.93606 1.28000 1.86169 1.85423 1.93595 1.76108 1.48831 1.75906 1.30367 1.11835 1.17369 1.13526 1.22618 0.98394 0.82769 0.98896 0.93337 0.77915 0.90563 0.90669 0.91871 0.91999 0.88474 0.88501 0.91251 0.87467 0.89499 0.89480 0.84960 0.85010 0.84574 0.84687 0.90532 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.74 5.24 -51.35 -0.27 -17.01 16 10 C 0.17 3.12 3.71 -65.78 -0.24 2.87 16 11 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 12 C -0.16 -2.33 6.65 -24.90 -0.17 -2.49 16 13 C 0.10 1.15 6.49 -3.06 -0.02 1.13 16 14 N -0.61 -8.33 3.33 -170.52 -0.57 -8.90 16 15 C 0.52 6.74 7.47 -10.98 -0.08 6.66 16 16 O -0.54 -8.66 14.25 5.56 0.08 -8.58 16 17 C -0.13 -1.05 4.36 -27.88 -0.12 -1.17 16 18 C -0.06 -0.48 1.68 -90.81 -0.15 -0.63 16 19 H 0.10 0.95 7.82 -51.93 -0.41 0.54 16 20 C -0.14 -1.08 4.72 -27.16 -0.13 -1.20 16 21 C -0.11 -0.71 5.73 -26.92 -0.15 -0.86 16 22 C -0.60 -3.09 6.35 37.18 0.24 -2.86 16 23 S 2.42 17.90 5.31 -107.50 -0.57 17.33 16 24 O -0.93 -10.61 17.94 -57.81 -1.04 -11.65 16 25 O -0.95 -10.07 18.10 -57.81 -1.05 -11.12 16 26 C -0.60 -3.21 5.62 37.18 0.21 -3.00 16 27 C 0.10 1.60 6.55 -2.53 -0.02 1.58 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.39 9.73 7.76 -40.82 -0.32 9.42 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.11 1.08 5.75 -51.93 -0.30 0.79 16 38 H 0.09 0.66 8.01 -51.93 -0.42 0.24 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 1.34 8.04 -51.92 -0.42 0.92 16 45 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -35.63 370.15 -10.32 -45.96 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.31 Total: 5.19 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.89 Total: -6.94 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.11 Total: -52.25 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -2.00 Total: -31.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 17.90 SS G_CDS: -0.57 Total: 17.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -10.32 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970428864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.056 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds