Wall clock time and date at job start Tue Mar 31 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 110.64443 * 36.40782 * 10 9 7 12 12 C 1.55154 * 110.71996 * 273.26929 * 10 9 7 13 13 C 1.54907 * 101.58470 * 206.13736 * 12 10 9 14 14 N 1.47425 * 104.83360 * 37.00605 * 13 12 10 15 15 C 1.34777 * 125.65286 * 155.90847 * 14 13 12 16 16 O 1.21276 * 120.00130 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99820 * 359.97438 * 15 14 13 18 18 C 1.53001 * 109.47380 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.37506 * 304.78875 * 18 17 15 20 20 C 1.52581 * 109.38450 * 64.47168 * 18 17 15 21 21 C 1.52595 * 110.64044 * 190.14730 * 20 18 17 22 22 C 1.53035 * 109.98507 * 290.01488 * 21 20 18 23 23 S 1.81665 * 108.99865 * 63.64921 * 22 21 20 24 24 O 1.42098 * 108.66314 * 191.37323 * 23 22 21 25 25 O 1.42100 * 108.66490 * 60.02859 * 23 22 21 26 26 C 1.53028 * 109.38474 * 185.00171 * 18 17 15 27 27 C 1.47032 * 108.70152 * 335.87621 * 14 13 12 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09007 * 111.00268 * 324.20986 * 12 10 9 31 31 H 1.08994 * 111.01033 * 88.05740 * 12 10 9 32 32 H 1.09004 * 110.37009 * 155.84483 * 13 12 10 33 33 H 1.09003 * 110.36628 * 278.06256 * 13 12 10 34 34 H 1.09005 * 109.47365 * 300.00277 * 17 15 14 35 35 H 1.09002 * 109.47025 * 59.99492 * 17 15 14 36 36 H 1.09006 * 109.24808 * 310.44530 * 20 18 17 37 37 H 1.08999 * 109.24264 * 69.84781 * 20 18 17 38 38 H 1.08998 * 109.38265 * 169.85651 * 21 20 18 39 39 H 1.08999 * 109.30080 * 50.12193 * 21 20 18 40 40 H 1.08999 * 109.55161 * 303.79409 * 22 21 20 41 41 H 1.09001 * 109.62469 * 183.55236 * 22 21 20 42 42 H 1.08997 * 109.54996 * 296.04343 * 26 18 17 43 43 H 1.09005 * 109.55376 * 56.33688 * 26 18 17 44 44 H 1.09002 * 109.88003 * 241.63753 * 27 14 13 45 45 H 1.09003 * 109.88091 * 120.47424 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5935 -3.2108 -0.6164 12 6 4.3143 -2.9956 1.4393 13 6 5.5939 -3.8544 1.2825 14 7 6.4294 -3.1145 0.3193 15 6 7.7699 -3.2034 0.2113 16 8 8.3562 -2.5453 -0.6217 17 6 8.5402 -4.1207 1.1258 18 6 10.0319 -4.0337 0.7970 19 1 10.1824 -4.2509 -0.2605 20 6 10.5359 -2.6256 1.0994 21 6 11.9472 -2.4305 0.5528 22 6 12.9426 -3.2608 1.3663 23 16 12.5503 -5.0226 1.1605 24 8 13.2962 -5.7688 2.1125 25 8 12.6511 -5.3530 -0.2179 26 6 10.7982 -5.0558 1.6396 27 6 5.5580 -2.2639 -0.5047 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 4.4792 -2.1721 2.1343 31 1 3.4693 -3.6075 1.7547 32 1 6.1087 -3.9465 2.2389 33 1 5.3434 -4.8404 0.8908 34 1 8.3787 -3.8210 2.1613 35 1 8.1961 -5.1455 0.9864 36 1 9.8682 -1.8981 0.6378 37 1 10.5439 -2.4709 2.1783 38 1 12.2175 -1.3765 0.6172 39 1 11.9771 -2.7487 -0.4893 40 1 12.8675 -2.9911 2.4197 41 1 13.9553 -3.0688 1.0118 42 1 10.7039 -4.8021 2.6955 43 1 10.3910 -6.0517 1.4645 44 1 5.6353 -2.5579 -1.5515 45 1 5.8438 -1.2183 -0.3891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970428865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:06 Heat of formation + Delta-G solvation = -94.789216 kcal Electronic energy + Delta-G solvation = -26541.010906 eV Core-core repulsion = 22685.939623 eV Total energy + Delta-G solvation = -3855.071284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.30988 -38.35260 -37.41147 -36.81681 -36.38647 -34.36194 -33.34473 -31.73142 -30.01325 -29.27657 -28.10291 -27.34996 -23.92541 -22.89005 -22.67999 -21.10644 -20.25198 -19.42730 -19.03343 -17.84315 -17.32560 -17.05663 -16.60304 -16.31185 -15.97778 -15.73426 -15.24618 -14.93240 -14.55115 -14.09661 -13.99678 -13.87046 -13.38837 -13.33238 -13.23593 -12.92979 -12.59037 -12.55719 -12.45108 -12.37649 -12.12548 -12.02824 -11.92132 -11.60738 -11.53153 -11.48581 -11.20354 -11.03958 -10.96683 -10.78892 -10.60011 -10.46853 -10.17437 -9.77719 -9.69146 -9.06232 -8.59453 -7.42318 -5.88357 -3.26305 -0.37495 2.24551 2.56678 2.92904 3.25544 3.30396 3.33766 3.39205 3.52864 3.99371 4.07353 4.21677 4.32009 4.42276 4.49088 4.56859 4.62866 4.83379 4.85143 4.96066 5.06962 5.08296 5.10195 5.13028 5.23414 5.33881 5.36969 5.45362 5.50652 5.57018 5.61352 5.75065 5.79823 5.85238 5.95113 6.03782 6.17586 6.34606 6.43891 6.70024 7.53085 7.85164 8.11575 8.29874 9.06377 9.78885 9.96640 11.29243 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030093 B = 0.002293 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.235509 B =12207.703742 C =12689.427544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.176 3.824 11 H 0.073 0.927 12 C -0.154 4.154 13 C 0.096 3.904 14 N -0.613 5.613 15 C 0.523 3.477 16 O -0.542 6.542 17 C -0.128 4.128 18 C -0.062 4.062 19 H 0.102 0.898 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.603 4.603 23 S 2.416 3.584 24 O -0.947 6.947 25 O -0.935 6.935 26 C -0.602 4.602 27 C 0.098 3.902 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.972 -9.785 6.360 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.065 3.935 11 H 0.091 0.909 12 C -0.195 4.195 13 C -0.027 4.027 14 N -0.347 5.347 15 C 0.312 3.688 16 O -0.420 6.420 17 C -0.168 4.168 18 C -0.081 4.081 19 H 0.120 0.880 20 C -0.182 4.182 21 C -0.145 4.145 22 C -0.732 4.732 23 S 2.599 3.401 24 O -0.944 6.944 25 O -0.932 6.932 26 C -0.731 4.731 27 C -0.025 4.025 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.088 0.912 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.656 -10.194 5.621 27.266 hybrid contribution -0.062 1.775 0.560 1.863 sum 24.594 -8.419 6.181 26.720 Atomic orbital electron populations 1.69692 1.05119 1.26046 1.56750 1.24673 0.95232 0.97285 1.01549 0.86576 0.79175 0.84926 0.77958 1.20887 1.21614 1.20334 1.19018 0.80161 0.94845 1.43975 0.88979 1.42715 1.04196 1.01460 1.89855 1.21162 0.88882 0.89970 0.93480 0.90896 1.23525 0.95262 0.99474 1.01227 1.22445 0.92378 0.95823 0.92035 1.48524 1.05515 1.43979 1.36636 1.20211 0.80748 0.83168 0.84677 1.90680 1.67911 1.46096 1.37306 1.21665 0.94049 1.00699 1.00426 1.20656 0.93680 0.93282 1.00511 0.88005 1.21943 0.96904 0.97456 1.01886 1.21238 0.92246 1.01420 0.99566 1.30245 1.09345 1.23592 1.10049 1.08039 0.78207 0.78252 0.75621 1.93597 1.68583 1.68380 1.63820 1.93604 1.85553 1.82044 1.32014 1.30362 1.23592 1.08519 1.10627 1.22300 0.90554 0.94897 0.94759 0.92877 0.80335 0.90710 0.90021 0.91151 0.91290 0.88450 0.88365 0.87536 0.91230 0.89481 0.89509 0.84997 0.84932 0.84671 0.84533 0.91248 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.97 55.49 0.78 -27.34 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.31 27.74 -169.99 -4.71 16.60 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.64 10.46 -15.06 -0.16 -6.79 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -16.26 5.05 -51.65 -0.26 -16.52 16 10 C 0.18 3.02 3.59 -66.10 -0.24 2.78 16 11 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 12 C -0.15 -2.18 6.77 -24.58 -0.17 -2.35 16 13 C 0.10 1.02 6.69 -2.53 -0.02 1.00 16 14 N -0.61 -7.86 3.33 -170.51 -0.57 -8.43 16 15 C 0.52 6.42 7.47 -10.99 -0.08 6.34 16 16 O -0.54 -8.33 14.32 5.56 0.08 -8.25 16 17 C -0.13 -0.98 4.18 -27.88 -0.12 -1.10 16 18 C -0.06 -0.45 1.67 -90.82 -0.15 -0.61 16 19 H 0.10 0.90 7.82 -51.93 -0.41 0.49 16 20 C -0.14 -1.05 4.72 -27.15 -0.13 -1.18 16 21 C -0.11 -0.69 5.73 -26.92 -0.15 -0.84 16 22 C -0.60 -2.99 6.35 37.18 0.24 -2.76 16 23 S 2.42 17.27 5.31 -107.50 -0.57 16.70 16 24 O -0.95 -9.86 18.10 -57.81 -1.05 -10.91 16 25 O -0.93 -10.32 17.93 -57.81 -1.04 -11.36 16 26 C -0.60 -3.02 5.62 37.17 0.21 -2.81 16 27 C 0.10 1.52 6.62 -3.06 -0.02 1.50 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 29 H 0.36 7.98 5.37 -40.82 -0.22 7.76 16 30 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.57 7.48 -51.93 -0.39 0.19 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.57 7.85 -51.93 -0.41 0.16 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 1.06 5.75 -51.93 -0.30 0.76 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.63 8.00 -51.93 -0.42 0.22 16 40 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -36.68 365.80 -9.91 -46.59 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.19 Total: 4.05 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.88 Total: -6.66 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.05 Total: -52.29 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -2.00 Total: -30.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.57 Total: 16.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.68 -9.91 -46.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970428865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.198 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds