Wall clock time and date at job start Tue Mar 31 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 110.64443 * 36.40782 * 10 9 7 12 12 C 1.55154 * 110.71996 * 273.26929 * 10 9 7 13 13 C 1.54907 * 101.58470 * 206.13736 * 12 10 9 14 14 N 1.47425 * 104.83360 * 37.00605 * 13 12 10 15 15 C 1.34777 * 125.65286 * 155.90847 * 14 13 12 16 16 O 1.21276 * 120.00130 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99820 * 359.97438 * 15 14 13 18 18 C 1.53001 * 109.47380 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.37506 * 304.78875 * 18 17 15 20 20 C 1.52581 * 109.38450 * 64.47168 * 18 17 15 21 21 C 1.52595 * 110.64044 * 190.14730 * 20 18 17 22 22 C 1.53035 * 109.98507 * 290.01488 * 21 20 18 23 23 S 1.81665 * 108.99865 * 63.64921 * 22 21 20 24 24 O 1.42098 * 108.66314 * 191.37323 * 23 22 21 25 25 O 1.42100 * 108.66490 * 60.02859 * 23 22 21 26 26 C 1.53028 * 109.38474 * 185.00171 * 18 17 15 27 27 C 1.47032 * 108.70152 * 335.87621 * 14 13 12 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09007 * 111.00268 * 324.20986 * 12 10 9 31 31 H 1.08994 * 111.01033 * 88.05740 * 12 10 9 32 32 H 1.09004 * 110.37009 * 155.84483 * 13 12 10 33 33 H 1.09003 * 110.36628 * 278.06256 * 13 12 10 34 34 H 1.09005 * 109.47365 * 300.00277 * 17 15 14 35 35 H 1.09002 * 109.47025 * 59.99492 * 17 15 14 36 36 H 1.09006 * 109.24808 * 310.44530 * 20 18 17 37 37 H 1.08999 * 109.24264 * 69.84781 * 20 18 17 38 38 H 1.08998 * 109.38265 * 169.85651 * 21 20 18 39 39 H 1.08999 * 109.30080 * 50.12193 * 21 20 18 40 40 H 1.08999 * 109.55161 * 303.79409 * 22 21 20 41 41 H 1.09001 * 109.62469 * 183.55236 * 22 21 20 42 42 H 1.08997 * 109.54996 * 296.04343 * 26 18 17 43 43 H 1.09005 * 109.55376 * 56.33688 * 26 18 17 44 44 H 1.09002 * 109.88003 * 241.63753 * 27 14 13 45 45 H 1.09003 * 109.88091 * 120.47424 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5935 -3.2108 -0.6164 12 6 4.3143 -2.9956 1.4393 13 6 5.5939 -3.8544 1.2825 14 7 6.4294 -3.1145 0.3193 15 6 7.7699 -3.2034 0.2113 16 8 8.3562 -2.5453 -0.6217 17 6 8.5402 -4.1207 1.1258 18 6 10.0319 -4.0337 0.7970 19 1 10.1824 -4.2509 -0.2605 20 6 10.5359 -2.6256 1.0994 21 6 11.9472 -2.4305 0.5528 22 6 12.9426 -3.2608 1.3663 23 16 12.5503 -5.0226 1.1605 24 8 13.2962 -5.7688 2.1125 25 8 12.6511 -5.3530 -0.2179 26 6 10.7982 -5.0558 1.6396 27 6 5.5580 -2.2639 -0.5047 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 4.4792 -2.1721 2.1343 31 1 3.4693 -3.6075 1.7547 32 1 6.1087 -3.9465 2.2389 33 1 5.3434 -4.8404 0.8908 34 1 8.3787 -3.8210 2.1613 35 1 8.1961 -5.1455 0.9864 36 1 9.8682 -1.8981 0.6378 37 1 10.5439 -2.4709 2.1783 38 1 12.2175 -1.3765 0.6172 39 1 11.9771 -2.7487 -0.4893 40 1 12.8675 -2.9911 2.4197 41 1 13.9553 -3.0688 1.0118 42 1 10.7039 -4.8021 2.6955 43 1 10.3910 -6.0517 1.4645 44 1 5.6353 -2.5579 -1.5515 45 1 5.8438 -1.2183 -0.3891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970428865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:06 Heat of formation + Delta-G solvation = -123.322062 kcal Electronic energy + Delta-G solvation = -26542.248184 eV Core-core repulsion = 22685.939623 eV Total energy + Delta-G solvation = -3856.308561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24533 -39.26335 -38.19950 -37.57683 -37.04593 -36.00225 -33.94874 -33.46894 -31.34939 -30.16711 -28.87334 -28.12307 -25.37305 -24.15756 -23.38525 -21.83111 -21.55609 -20.18871 -19.75031 -19.69934 -18.20777 -17.66039 -17.42293 -17.23296 -16.63800 -16.45622 -16.38538 -15.89074 -15.81471 -15.48667 -14.91370 -14.66214 -14.58491 -14.34965 -13.84368 -13.80525 -13.75365 -13.42626 -13.36675 -13.22567 -13.12443 -13.05784 -12.99708 -12.76152 -12.49626 -12.24148 -12.19740 -12.13459 -12.00806 -11.82290 -11.74019 -11.70457 -11.55998 -10.99312 -10.95400 -10.69588 -9.63843 -9.33840 -8.03409 -5.37820 -0.88065 1.37591 1.40138 1.46640 1.67129 1.75749 2.00694 2.46927 2.75515 2.99917 3.26713 3.41608 3.54430 3.61205 3.68114 3.79513 3.83018 3.90873 3.97632 4.13506 4.24247 4.26111 4.37481 4.41436 4.49360 4.49981 4.63680 4.68596 4.70947 4.82197 4.84488 4.89792 4.98171 5.03369 5.11504 5.20326 5.28295 5.36735 5.39991 5.43940 5.76313 6.20213 6.59532 7.04833 7.18918 7.80070 7.97379 9.17454 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030093 B = 0.002293 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.235509 B =12207.703742 C =12689.427544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.227 4.227 8 H 0.065 0.935 9 N -0.747 5.747 10 C 0.165 3.835 11 H 0.066 0.934 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.616 5.616 15 C 0.517 3.483 16 O -0.580 6.580 17 C -0.121 4.121 18 C -0.066 4.066 19 H 0.077 0.923 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.587 4.587 23 S 2.412 3.588 24 O -0.984 6.984 25 O -0.987 6.987 26 C -0.582 4.582 27 C 0.107 3.893 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.164 0.836 41 H 0.142 0.858 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.052 -10.427 8.900 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.358 4.358 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.056 3.944 11 H 0.084 0.916 12 C -0.188 4.188 13 C -0.016 4.016 14 N -0.350 5.350 15 C 0.308 3.692 16 O -0.461 6.461 17 C -0.161 4.161 18 C -0.086 4.086 19 H 0.095 0.905 20 C -0.184 4.184 21 C -0.149 4.149 22 C -0.718 4.718 23 S 2.601 3.399 24 O -0.981 6.981 25 O -0.984 6.984 26 C -0.714 4.714 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.198 0.802 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.182 0.818 41 H 0.160 0.840 42 H 0.191 0.809 43 H 0.172 0.828 44 H 0.080 0.920 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 26.826 -10.918 8.167 30.092 hybrid contribution -0.721 1.924 -0.276 2.073 sum 26.105 -8.993 7.891 28.716 Atomic orbital electron populations 1.69858 1.06989 1.26626 1.59594 1.25425 0.96010 1.00983 1.02779 0.85503 0.78644 0.80244 0.77896 1.20909 1.22292 1.17867 1.18989 0.82115 0.93597 1.41068 0.91691 1.42720 1.02702 1.03418 1.90117 1.21373 0.89316 0.87861 0.95821 0.91571 1.23342 0.97602 0.99766 0.98082 1.22552 0.90294 0.95293 0.93503 1.48622 1.05853 1.43829 1.36649 1.21145 0.80282 0.83082 0.84707 1.90678 1.68534 1.47754 1.39131 1.21778 0.92944 1.00729 1.00675 1.20634 0.94153 0.93999 0.99778 0.90478 1.21947 0.96291 0.96621 1.03533 1.21239 0.92644 1.02103 0.98881 1.30103 1.09452 1.20459 1.11831 1.07807 0.79186 0.78948 0.73986 1.93551 1.70322 1.70152 1.64084 1.93541 1.86745 1.83480 1.34651 1.30187 1.19974 1.08952 1.12262 1.21947 0.89978 0.94809 0.94976 0.93340 0.80242 0.91706 0.89956 0.87154 0.89145 0.85151 0.85812 0.90478 0.88111 0.88643 0.91429 0.81817 0.83953 0.80866 0.82764 0.92001 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.04 13.97 21.65 0.30 -60.74 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 3 Si 0.95 44.41 27.74 68.60 1.90 46.32 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 7 C -0.23 -12.19 10.46 84.03 0.88 -11.31 16 8 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.75 -32.57 5.05 -317.33 -1.60 -34.17 16 10 C 0.17 5.54 3.59 46.18 0.17 5.70 16 11 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 12 C -0.15 -3.84 6.77 31.98 0.22 -3.62 16 13 C 0.11 1.78 6.69 86.85 0.58 2.36 16 14 N -0.62 -14.11 3.33 -811.77 -2.70 -16.81 16 15 C 0.52 11.33 7.47 87.66 0.65 11.99 16 16 O -0.58 -17.48 14.32 -3.02 -0.04 -17.52 16 17 C -0.12 -1.29 4.18 29.85 0.12 -1.17 16 18 C -0.07 -0.76 1.67 -10.92 -0.02 -0.78 16 19 H 0.08 1.30 7.82 -2.38 -0.02 1.28 16 20 C -0.15 -1.72 4.72 30.32 0.14 -1.58 16 21 C -0.11 -1.23 5.73 30.47 0.17 -1.06 16 22 C -0.59 -4.27 6.35 71.99 0.46 -3.81 16 23 S 2.41 30.66 5.31 -56.49 -0.30 30.36 16 24 O -0.98 -19.11 18.10 -127.40 -2.31 -21.42 16 25 O -0.99 -22.13 17.93 -127.40 -2.28 -24.41 16 26 C -0.58 -3.44 5.62 71.99 0.40 -3.04 16 27 C 0.11 3.22 6.62 86.73 0.57 3.79 16 28 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 29 H 0.36 15.66 5.37 -92.71 -0.50 15.17 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 1.08 7.48 -2.39 -0.02 1.07 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 0.62 7.85 -2.38 -0.02 0.60 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.43 5.75 -2.38 -0.01 1.41 16 37 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.00 8.00 -2.39 -0.02 0.99 16 40 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.17 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.73 7.69 -2.39 -0.02 1.71 16 Total: -1.00 -84.76 365.80 -1.78 -86.54 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.43 Total: 17.34 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 4.82 Total: -5.48 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.00 Total: -111.72 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -4.63 Total: -63.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: 30.66 SS G_CDS: -0.30 Total: 30.36 kcal Total: -84.76 -1.78 -86.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970428865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.784 kcal (2) G-P(sol) polarization free energy of solvation -84.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds