Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.46030 * 275.02861 * 10 9 7 12 12 C 1.53191 * 109.31208 * 178.60060 * 11 10 9 13 13 N 1.46932 * 108.76263 * 54.65679 * 12 11 10 14 14 C 1.34776 * 120.62871 * 126.36255 * 13 12 11 15 15 O 1.21286 * 119.99961 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00263 * 0.02562 * 14 13 12 17 17 C 1.53001 * 109.47086 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.28136 * 52.89146 * 17 16 14 19 19 C 1.54167 * 110.31769 * 175.00199 * 17 16 14 20 20 C 1.53874 * 108.70485 * 146.81461 * 19 17 16 21 21 C 1.55050 * 106.62382 * 312.81847 * 20 19 17 22 22 S 1.82918 * 110.32044 * 290.66334 * 17 16 14 23 23 O 1.42094 * 109.35520 * 352.37714 * 22 17 16 24 24 O 1.42104 * 109.35046 * 125.57775 * 22 17 16 25 25 C 1.46924 * 118.73902 * 306.38236 * 13 12 11 26 26 C 1.53040 * 109.45516 * 154.97522 * 10 9 7 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.45999 * 35.00448 * 10 9 7 30 30 H 1.08996 * 109.49891 * 298.56699 * 11 10 9 31 31 H 1.09003 * 109.49621 * 58.66661 * 11 10 9 32 32 H 1.08999 * 109.60424 * 294.87150 * 12 11 10 33 33 H 1.09002 * 109.70646 * 174.50614 * 12 11 10 34 34 H 1.08990 * 109.47243 * 300.00193 * 16 14 13 35 35 H 1.09000 * 109.46866 * 60.00222 * 16 14 13 36 36 H 1.09000 * 109.64599 * 266.66911 * 19 17 16 37 37 H 1.09004 * 109.64598 * 26.96352 * 19 17 16 38 38 H 1.08999 * 110.03126 * 72.11002 * 20 19 17 39 39 H 1.09001 * 110.02605 * 193.52984 * 20 19 17 40 40 H 1.08997 * 110.79483 * 160.70252 * 21 20 19 41 41 H 1.08998 * 110.78787 * 284.16787 * 21 20 19 42 42 H 1.09000 * 109.58843 * 293.82381 * 25 13 12 43 43 H 1.09001 * 109.70419 * 173.46643 * 25 13 12 44 44 H 1.09003 * 109.49957 * 301.33145 * 26 10 9 45 45 H 1.08995 * 109.50128 * 61.40694 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.4168 -4.0319 -1.4511 12 6 3.2127 -5.3409 -1.4502 13 7 2.4381 -6.3645 -0.7354 14 6 2.1670 -7.5503 -1.3158 15 8 1.5262 -8.3869 -0.7154 16 6 2.6600 -7.8366 -2.7108 17 6 2.2197 -9.2410 -3.1290 18 1 1.1444 -9.3560 -2.9932 19 6 2.6054 -9.5077 -4.5976 20 6 2.9452 -11.0002 -4.7553 21 6 3.8946 -11.3650 -3.5851 22 16 3.1233 -10.5041 -2.1626 23 8 4.1345 -9.8717 -1.3902 24 8 2.1905 -11.3735 -1.5355 25 6 1.9644 -6.0707 0.6240 26 6 1.1828 -4.7534 0.5999 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 2.9708 -3.5517 0.5747 30 1 1.5035 -4.1617 -2.0317 31 1 3.0205 -3.2396 -1.8938 32 1 4.1676 -5.1879 -0.9474 33 1 3.3879 -5.6653 -2.4760 34 1 2.2425 -7.1039 -3.4013 35 1 3.7481 -7.7763 -2.7311 36 1 1.7694 -9.2515 -5.2484 37 1 3.4731 -8.9042 -4.8641 38 1 2.0357 -11.5982 -4.6985 39 1 3.4454 -11.1704 -5.7087 40 1 3.9116 -12.4426 -3.4221 41 1 4.8993 -10.9845 -3.7690 42 1 2.8175 -5.9771 1.2960 43 1 1.3144 -6.8750 0.9686 44 1 0.9081 -4.4747 1.6172 45 1 0.2810 -4.8759 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996865580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -97.847411 kcal Electronic energy + Delta-G solvation = -27071.827113 eV Core-core repulsion = 23216.623216 eV Total energy + Delta-G solvation = -3855.203897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26178 -37.73097 -37.17671 -36.90427 -36.05273 -34.54340 -32.84160 -31.96703 -30.78896 -29.34368 -27.69698 -25.22492 -24.21988 -23.03369 -22.39931 -21.81338 -20.34872 -19.06458 -18.67702 -17.57102 -17.29834 -17.04116 -16.69077 -16.05960 -15.60916 -15.35094 -14.85453 -14.66718 -14.37499 -14.15418 -13.82454 -13.76723 -13.57165 -13.39968 -13.22868 -12.86073 -12.50926 -12.30307 -12.25894 -12.19553 -12.13748 -12.01443 -11.88634 -11.60378 -11.44129 -10.99329 -10.91464 -10.86641 -10.84029 -10.52146 -10.39490 -10.26332 -9.89189 -9.83052 -9.69639 -8.94503 -8.55112 -7.01602 -5.80917 -3.10327 -0.19660 2.35900 2.56206 2.94974 3.36768 3.39857 3.45354 3.47185 3.67252 3.94678 4.06688 4.20855 4.27677 4.45479 4.54383 4.59383 4.77266 4.94371 4.98670 5.03136 5.19099 5.27945 5.29678 5.31591 5.33570 5.38820 5.41181 5.51216 5.51522 5.61213 5.71112 5.92687 5.99617 6.20627 6.32030 6.36192 6.47495 6.56751 6.85346 6.99776 7.42830 7.65165 8.08394 8.37308 9.48547 10.05912 10.40599 11.41630 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.002496 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.751148 B =11216.413531 C =11564.963962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.151 4.151 12 C 0.103 3.897 13 N -0.597 5.597 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.120 4.120 17 C -0.539 4.539 18 H 0.152 0.848 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.604 4.604 22 S 2.395 3.605 23 O -0.931 6.931 24 O -0.926 6.926 25 C 0.113 3.887 26 C -0.139 4.139 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -22.136 -12.076 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.193 4.193 12 C -0.020 4.020 13 N -0.329 5.329 14 C 0.298 3.702 15 O -0.435 6.435 16 C -0.160 4.160 17 C -0.649 4.649 18 H 0.170 0.830 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.733 4.733 22 S 2.576 3.424 23 O -0.928 6.928 24 O -0.923 6.923 25 C -0.009 4.009 26 C -0.178 4.178 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.152 -22.553 -10.745 26.278 hybrid contribution 0.086 1.254 -0.980 1.594 sum 8.238 -21.299 -11.725 25.671 Atomic orbital electron populations 1.69664 1.05143 1.25712 1.57530 1.24759 0.95505 0.97740 1.02946 0.86199 0.78674 0.83876 0.77480 1.21752 1.21786 1.20739 1.19232 0.90969 0.84077 1.42857 0.91144 1.42440 1.05816 0.99699 1.88483 1.20173 0.94566 0.86102 0.92383 1.22687 1.00018 0.94651 1.01908 1.21955 0.94891 0.88694 0.96423 1.48062 1.53478 1.14598 1.16760 1.20470 0.79640 0.82079 0.87981 1.90731 1.41298 1.46024 1.65445 1.21420 1.03791 0.95181 0.95636 1.30140 1.15252 1.10808 1.08708 0.82992 1.22065 1.04030 0.96181 0.92973 1.22199 0.98998 0.95810 0.98878 1.30796 1.10700 1.13851 1.17916 1.09202 0.77145 0.78051 0.78020 1.93587 1.57588 1.75361 1.66287 1.93604 1.62108 1.64203 1.72379 1.21682 0.99046 0.98181 0.82011 1.22214 0.99169 0.94046 1.02352 0.93476 0.78257 0.93288 0.92157 0.90479 0.90979 0.90410 0.86518 0.87053 0.88546 0.89374 0.89421 0.88384 0.84681 0.84526 0.91256 0.89136 0.90429 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.50 5.12 -53.38 -0.27 -17.77 16 10 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 11 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 12 C 0.10 1.28 6.34 -3.71 -0.02 1.25 16 13 N -0.60 -8.45 2.97 -172.76 -0.51 -8.96 16 14 C 0.51 7.27 7.06 -10.99 -0.08 7.20 16 15 O -0.56 -9.71 14.52 5.55 0.08 -9.63 16 16 C -0.12 -1.11 3.07 -27.88 -0.09 -1.20 16 17 C -0.54 -4.44 2.77 -26.12 -0.07 -4.51 16 18 H 0.15 1.33 7.91 -51.93 -0.41 0.92 16 19 C -0.11 -0.49 5.94 -25.67 -0.15 -0.64 16 20 C -0.12 -0.47 6.48 -25.19 -0.16 -0.63 16 21 C -0.60 -3.25 7.31 38.24 0.28 -2.97 16 22 S 2.39 25.47 4.93 -107.50 -0.53 24.94 16 23 O -0.93 -12.86 16.60 -57.71 -0.96 -13.81 16 24 O -0.93 -13.73 18.15 -57.71 -1.05 -14.78 16 25 C 0.11 1.69 6.43 -3.71 -0.02 1.66 16 26 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 29 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 34 H 0.12 0.82 7.69 -51.93 -0.40 0.42 16 35 H 0.11 0.84 7.52 -51.93 -0.39 0.45 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.24 7.86 -51.93 -0.41 -0.17 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -37.18 366.48 -10.28 -47.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.21 Total: 5.92 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.05 Total: -8.76 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.06 Total: -53.75 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.92 Total: -38.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 25.47 SS G_CDS: -0.53 Total: 24.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.18 -10.28 -47.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996865580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.385 kcal (2) G-P(sol) polarization free energy of solvation -37.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds