Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47103 * 269.99870 * 3 2 1 5 5 H 1.48493 * 109.47309 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.46920 * 149.99859 * 3 2 1 7 7 C 1.38811 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00030 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99987 * 179.97438 * 9 7 2 11 11 C 1.53046 * 109.45842 * 84.93087 * 10 9 7 12 12 C 1.53193 * 109.31028 * 181.38506 * 11 10 9 13 13 N 1.46927 * 108.77663 * 305.36644 * 12 11 10 14 14 C 1.34774 * 120.62692 * 233.59122 * 13 12 11 15 15 O 1.21281 * 120.00056 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00254 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47115 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.28587 * 302.88485 * 17 16 14 19 19 C 1.54173 * 110.31790 * 180.66549 * 17 16 14 20 20 C 1.53875 * 108.70338 * 213.18754 * 19 17 16 21 21 C 1.55054 * 106.62266 * 47.18352 * 20 19 17 22 22 S 1.82916 * 110.32212 * 65.00342 * 17 16 14 23 23 O 1.42099 * 109.35416 * 234.42777 * 22 17 16 24 24 O 1.42110 * 109.35067 * 7.49355 * 22 17 16 25 25 C 1.46919 * 118.74179 * 53.60344 * 13 12 11 26 26 C 1.53046 * 109.46053 * 204.99557 * 10 9 7 27 27 H 0.96992 * 120.00036 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00629 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.45092 * 324.96124 * 10 9 7 30 30 H 1.09001 * 109.49347 * 301.33544 * 11 10 9 31 31 H 1.08998 * 109.49687 * 61.43246 * 11 10 9 32 32 H 1.09000 * 109.58615 * 185.57833 * 12 11 10 33 33 H 1.08998 * 109.58446 * 65.14816 * 12 11 10 34 34 H 1.08998 * 109.47497 * 300.00767 * 16 14 13 35 35 H 1.09000 * 109.46870 * 60.00930 * 16 14 13 36 36 H 1.09005 * 109.64296 * 333.03914 * 19 17 16 37 37 H 1.08995 * 109.64554 * 93.33614 * 19 17 16 38 38 H 1.08997 * 110.03110 * 287.89346 * 20 19 17 39 39 H 1.08994 * 110.02954 * 166.46689 * 20 19 17 40 40 H 1.09000 * 110.78794 * 199.30196 * 21 20 19 41 41 H 1.08990 * 110.79289 * 75.83260 * 21 20 19 42 42 H 1.09002 * 109.59216 * 186.60571 * 25 13 12 43 43 H 1.09006 * 109.58250 * 66.18466 * 25 13 12 44 44 H 1.09004 * 109.49895 * 298.56712 * 26 10 9 45 45 H 1.08997 * 109.49204 * 58.63278 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 4.2572 -2.9758 -1.4375 12 6 4.9932 -4.3193 -1.4306 13 7 6.2669 -4.1572 -0.7165 14 6 7.4293 -4.5186 -1.2951 15 8 8.4741 -4.3802 -0.6951 16 6 7.4308 -5.0946 -2.6876 17 6 8.8670 -5.4184 -3.1041 18 1 9.4887 -4.5252 -3.0429 19 6 8.8928 -5.9942 -4.5340 20 6 10.0339 -7.0218 -4.6316 21 6 9.9131 -7.9384 -3.3868 22 16 9.5522 -6.7430 -2.0450 23 8 10.7728 -6.3003 -1.4677 24 8 8.5227 -7.2610 -1.2135 25 6 6.2495 -3.5940 0.6403 26 6 5.4995 -2.2586 0.6103 27 1 -0.4850 0.8400 -0.0004 28 1 3.8647 -0.3621 0.0004 29 1 3.5647 -3.2060 0.5897 30 1 3.2691 -3.1044 -1.8793 31 1 4.8261 -2.2523 -2.0215 32 1 5.1866 -4.6353 -2.4557 33 1 4.3832 -5.0675 -0.9243 34 1 6.8336 -6.0063 -2.7044 35 1 7.0058 -4.3691 -3.3813 36 1 7.9417 -6.4810 -4.7503 37 1 9.0618 -5.1899 -5.2499 38 1 10.9971 -6.5117 -4.6274 39 1 9.9277 -7.6124 -5.5415 40 1 10.8513 -8.4601 -3.1980 41 1 9.0927 -8.6460 -3.5056 42 1 7.2718 -3.4313 0.9817 43 1 5.7419 -4.2830 1.3155 44 1 6.0567 -1.5419 0.0069 45 1 5.3955 -1.8762 1.6257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996865584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = -93.373739 kcal Electronic energy + Delta-G solvation = -27171.423020 eV Core-core repulsion = 23316.413116 eV Total energy + Delta-G solvation = -3855.009904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.33466 -37.83069 -37.16998 -36.95044 -36.04477 -34.70047 -32.87320 -32.00592 -30.87195 -29.87861 -27.77150 -25.32844 -24.24594 -23.03132 -22.18562 -21.82852 -20.44034 -19.17850 -18.73010 -17.63985 -17.56083 -17.20568 -16.70021 -16.10995 -15.63957 -15.38100 -14.88953 -14.67461 -14.40525 -14.19573 -14.11338 -13.76770 -13.72003 -13.33461 -13.18045 -12.79166 -12.55806 -12.44320 -12.26571 -12.22482 -12.14179 -12.05034 -12.01765 -11.92780 -11.48008 -11.09677 -11.04571 -10.94242 -10.87661 -10.61067 -10.41046 -10.28592 -9.94346 -9.90654 -9.63443 -8.97867 -8.62259 -7.33364 -5.82021 -3.18059 -0.20384 2.34541 2.52186 2.89479 3.34049 3.36793 3.37596 3.42475 3.65116 3.93753 4.04024 4.18881 4.25320 4.42652 4.54780 4.56029 4.72065 4.92034 4.93675 5.00342 5.05318 5.17112 5.21779 5.24632 5.29162 5.31000 5.38102 5.44595 5.47450 5.54269 5.61213 5.82471 5.90344 6.05699 6.13023 6.22512 6.33518 6.46508 6.74477 6.88190 7.36230 7.93433 8.02195 8.37108 9.15157 9.88002 10.07729 11.36148 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.002616 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.081786 B =10699.483219 C =10930.143099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.152 4.152 12 C 0.103 3.897 13 N -0.598 5.598 14 C 0.512 3.488 15 O -0.556 6.556 16 C -0.119 4.119 17 C -0.541 4.541 18 H 0.150 0.850 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.606 4.606 22 S 2.399 3.601 23 O -0.926 6.926 24 O -0.930 6.930 25 C 0.114 3.886 26 C -0.143 4.143 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.492 -16.282 -11.916 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.193 4.193 12 C -0.020 4.020 13 N -0.329 5.329 14 C 0.300 3.700 15 O -0.436 6.436 16 C -0.159 4.159 17 C -0.650 4.650 18 H 0.168 0.832 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.734 4.734 22 S 2.579 3.421 23 O -0.923 6.923 24 O -0.927 6.927 25 C -0.009 4.009 26 C -0.182 4.182 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.880 -16.309 -10.588 27.808 hybrid contribution 0.273 1.381 -0.968 1.708 sum 20.153 -14.928 -11.556 27.614 Atomic orbital electron populations 1.69696 1.05111 1.25885 1.57376 1.24676 0.95222 0.97231 1.01953 0.86555 0.79245 0.85003 0.77733 1.21163 1.21743 1.20314 1.19062 0.80518 0.94688 1.43187 0.89145 1.42801 1.04025 1.01971 1.90216 1.20152 0.90267 0.89461 0.92841 1.22653 1.00568 0.94666 1.01402 1.21957 0.84040 0.99385 0.96585 1.48052 1.06456 1.61501 1.16927 1.20475 0.83775 0.77823 0.87936 1.90723 1.31090 1.56409 1.65380 1.21416 0.94567 1.04422 0.95536 1.30142 1.06555 1.18246 1.10059 0.83173 1.22062 1.00218 0.99162 0.93799 1.22197 1.00002 0.95795 0.97893 1.30820 1.12014 1.14166 1.16448 1.09131 0.76303 0.78755 0.77888 1.93596 1.44421 1.80022 1.74285 1.93588 1.57932 1.77979 1.63177 1.21663 1.02273 0.94689 0.82229 1.22256 0.97140 0.96432 1.02328 0.93024 0.80639 0.92391 0.89949 0.92254 0.90249 0.90720 0.87040 0.86545 0.89352 0.88590 0.89449 0.88382 0.84695 0.84530 0.89046 0.91017 0.91954 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 N -0.75 -16.91 4.92 -53.38 -0.26 -17.17 16 10 C 0.18 3.25 2.73 -67.88 -0.19 3.07 16 11 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 12 C 0.10 1.22 6.34 -3.71 -0.02 1.19 16 13 N -0.60 -8.08 2.97 -172.78 -0.51 -8.59 16 14 C 0.51 7.02 6.84 -10.99 -0.08 6.94 16 15 O -0.56 -9.45 14.18 5.13 0.07 -9.37 16 16 C -0.12 -1.05 3.09 -27.88 -0.09 -1.13 16 17 C -0.54 -4.24 2.80 -26.12 -0.07 -4.32 16 18 H 0.15 1.22 8.04 -51.93 -0.42 0.80 16 19 C -0.11 -0.46 5.94 -25.66 -0.15 -0.61 16 20 C -0.12 -0.45 6.48 -25.19 -0.16 -0.61 16 21 C -0.61 -3.21 7.31 38.24 0.28 -2.93 16 22 S 2.40 25.19 4.68 -107.50 -0.50 24.69 16 23 O -0.93 -13.61 18.15 -57.73 -1.05 -14.66 16 24 O -0.93 -12.79 16.36 -59.69 -0.98 -13.77 16 25 C 0.11 1.62 6.43 -3.72 -0.02 1.59 16 26 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 29 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.12 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.09 0.22 7.86 -51.93 -0.41 -0.19 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -38.05 362.69 -9.95 -48.00 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.19 Total: 4.64 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.05 Total: -8.34 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.00 Total: -53.69 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.95 Total: -37.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 25.19 SS G_CDS: -0.50 Total: 24.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.05 -9.95 -48.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996865584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.377 kcal (2) G-P(sol) polarization free energy of solvation -38.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds