Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48501 * 109.46921 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46934 * 119.99834 * 3 2 1 7 7 C 1.38810 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00274 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46462 * 205.00501 * 10 9 7 12 12 C 1.53192 * 109.31313 * 178.61691 * 11 10 9 13 13 N 1.46922 * 108.77514 * 54.63581 * 12 11 10 14 14 C 1.34781 * 120.63250 * 126.37172 * 13 12 11 15 15 O 1.21277 * 119.99784 * 355.45847 * 14 13 12 16 16 C 1.50696 * 119.99779 * 175.45616 * 14 13 12 17 17 H 1.08999 * 109.38746 * 37.95853 * 16 14 13 18 18 C 1.52588 * 109.38740 * 278.16409 * 16 14 13 19 19 C 1.52630 * 110.62046 * 169.75605 * 18 16 14 20 20 C 1.53036 * 109.89671 * 70.13820 * 19 18 16 21 21 S 1.81666 * 108.99893 * 296.31196 * 20 19 18 22 22 O 1.42101 * 108.66306 * 299.96713 * 21 20 19 23 23 O 1.42101 * 108.66147 * 168.63128 * 21 20 19 24 24 C 1.53040 * 109.37882 * 157.74458 * 16 14 13 25 25 C 1.46925 * 118.73949 * 306.38913 * 13 12 11 26 26 C 1.53044 * 109.45770 * 84.93588 * 10 9 7 27 27 H 0.96997 * 120.00571 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00314 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.45549 * 324.98184 * 10 9 7 30 30 H 1.08998 * 109.49571 * 58.66203 * 11 10 9 31 31 H 1.09004 * 109.49601 * 298.56572 * 11 10 9 32 32 H 1.09000 * 109.58316 * 174.42495 * 12 11 10 33 33 H 1.09004 * 109.58295 * 294.84452 * 12 11 10 34 34 H 1.09002 * 109.24040 * 290.16105 * 18 16 14 35 35 H 1.08994 * 109.24098 * 49.55701 * 18 16 14 36 36 H 1.08998 * 109.45854 * 309.98753 * 19 18 16 37 37 H 1.09003 * 109.31054 * 190.19759 * 19 18 16 38 38 H 1.09003 * 109.54647 * 176.45650 * 20 19 18 39 39 H 1.08998 * 109.54947 * 56.16963 * 20 19 18 40 40 H 1.09000 * 109.55084 * 303.66005 * 24 16 14 41 41 H 1.08999 * 109.55269 * 63.85445 * 24 16 14 42 42 H 1.09006 * 109.58623 * 293.82809 * 25 13 12 43 43 H 1.08999 * 109.71107 * 173.47051 * 25 13 12 44 44 H 1.08998 * 109.49595 * 301.34018 * 26 10 9 45 45 H 1.09002 * 109.49719 * 61.43415 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.1803 -4.7525 -0.6071 12 6 1.9619 -6.0697 -0.6371 13 7 2.4422 -6.3655 0.7195 14 6 2.1740 -7.5522 1.2994 15 8 1.4619 -8.3557 0.7353 16 6 2.7590 -7.8807 2.6488 17 1 2.7602 -6.9853 3.2703 18 6 4.1911 -8.3770 2.4728 19 6 4.8950 -8.4773 3.8233 20 6 4.3027 -9.6317 4.6349 21 16 2.5578 -9.2710 4.9895 22 8 2.4855 -8.0633 5.7347 23 8 1.9464 -10.4457 5.5049 24 6 1.9111 -8.9637 3.3199 25 6 3.2202 -5.3430 1.4321 26 6 2.4246 -4.0339 1.4389 27 1 -0.4851 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0016 29 1 2.9683 -3.5506 -0.5889 30 1 0.9005 -4.4722 -1.6226 31 1 0.2817 -4.8764 -0.0027 32 1 1.3095 -6.8739 -0.9773 33 1 2.8116 -5.9750 -1.3132 34 1 4.1754 -9.3590 2.0000 35 1 4.7367 -7.6810 1.8356 36 1 4.7633 -7.5446 4.3717 37 1 5.9584 -8.6559 3.6632 38 1 4.8507 -9.7382 5.5711 39 1 4.3749 -10.5556 4.0612 40 1 0.8761 -8.6281 3.3856 41 1 1.9605 -9.8812 2.7335 42 1 4.1726 -5.1890 0.9247 43 1 3.4005 -5.6663 2.4572 44 1 3.0304 -3.2422 1.8796 45 1 1.5142 -4.1645 2.0240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997063849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -98.581269 kcal Electronic energy + Delta-G solvation = -27223.835684 eV Core-core repulsion = 23368.599964 eV Total energy + Delta-G solvation = -3855.235719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.59214 -37.92749 -37.37649 -36.66612 -36.33944 -34.56627 -32.61530 -31.97054 -30.82799 -29.34114 -28.15231 -25.65188 -24.30520 -23.09414 -22.65891 -21.76108 -20.20922 -19.25733 -18.97242 -17.79844 -17.10164 -16.94669 -16.34208 -16.10354 -15.71850 -15.51037 -15.31983 -14.86066 -14.36639 -14.08358 -13.84673 -13.77921 -13.59621 -13.44693 -13.41203 -13.10983 -12.57313 -12.42455 -12.33908 -12.25691 -12.04337 -11.92997 -11.84865 -11.64470 -11.45447 -11.16423 -10.99205 -10.91541 -10.85314 -10.69015 -10.53583 -10.30447 -9.89561 -9.76640 -9.69244 -8.95281 -8.62111 -7.02963 -5.81528 -3.11337 -0.35554 2.25785 2.45988 2.91607 3.29411 3.39985 3.44525 3.46010 3.52318 3.93972 4.06514 4.19281 4.23460 4.34933 4.53573 4.54752 4.71147 4.85028 5.01855 5.02928 5.14819 5.24325 5.26587 5.30798 5.33288 5.37261 5.46898 5.49274 5.56378 5.63816 5.65281 5.86409 5.91461 6.15239 6.29047 6.31928 6.44207 6.53511 6.81747 6.97452 7.36503 7.63267 8.06063 8.36464 9.47666 10.04731 10.39174 11.40864 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.002747 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.804357 B =10191.481685 C =10672.275568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.115 3.885 13 N -0.602 5.602 14 C 0.525 3.475 15 O -0.543 6.543 16 C -0.101 4.101 17 H 0.117 0.883 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.606 4.606 21 S 2.418 3.582 22 O -0.932 6.932 23 O -0.941 6.941 24 C -0.586 4.586 25 C 0.101 3.899 26 C -0.153 4.153 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 -20.691 6.238 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.179 4.179 12 C -0.007 4.007 13 N -0.334 5.334 14 C 0.312 3.688 15 O -0.421 6.421 16 C -0.123 4.123 17 H 0.135 0.865 18 C -0.170 4.170 19 C -0.146 4.146 20 C -0.735 4.735 21 S 2.600 3.400 22 O -0.929 6.929 23 O -0.938 6.938 24 C -0.715 4.715 25 C -0.022 4.022 26 C -0.195 4.195 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.660 -20.924 6.740 24.431 hybrid contribution 0.478 0.997 -0.665 1.291 sum 11.138 -19.926 6.075 23.622 Atomic orbital electron populations 1.69648 1.05150 1.25881 1.57299 1.24756 0.95493 0.97737 1.02822 0.86279 0.78538 0.83581 0.77827 1.21275 1.21703 1.21226 1.19173 0.90920 0.84084 1.43200 0.91205 1.42427 1.05822 0.99675 1.88498 1.20159 0.94441 0.86128 0.92383 1.22213 0.99263 0.94063 1.02330 1.21654 0.98793 0.98246 0.82006 1.48166 1.53761 1.14514 1.17001 1.20102 0.80605 0.81583 0.86547 1.90677 1.37800 1.48580 1.65010 1.21112 0.95335 0.99075 0.96787 0.86521 1.21701 0.92775 1.04010 0.98482 1.21289 1.01980 0.96837 0.94502 1.30266 1.24275 1.08413 1.10535 1.08075 0.78619 0.75532 0.77820 1.93615 1.85662 1.46261 1.67387 1.93606 1.74359 1.49117 1.76761 1.30197 1.11096 1.08282 1.21920 1.22011 0.94747 0.88902 0.96582 1.22708 1.00199 0.94638 1.01920 0.93383 0.78236 0.93401 0.90495 0.91790 0.89327 0.91406 0.89746 0.88867 0.89200 0.88855 0.84625 0.84748 0.84211 0.83863 0.91117 0.90149 0.90394 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.28 5.12 -53.38 -0.27 -17.56 16 10 C 0.18 3.24 2.73 -67.89 -0.19 3.06 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 12 C 0.12 1.51 6.44 -3.71 -0.02 1.49 16 13 N -0.60 -7.38 2.97 -172.77 -0.51 -7.90 16 14 C 0.53 6.44 6.79 -10.99 -0.07 6.37 16 15 O -0.54 -8.37 15.55 5.56 0.09 -8.28 16 16 C -0.10 -0.86 1.53 -91.96 -0.14 -1.00 16 17 H 0.12 0.92 6.08 -51.93 -0.32 0.60 16 18 C -0.13 -0.74 4.86 -27.13 -0.13 -0.87 16 19 C -0.11 -0.46 5.74 -26.90 -0.15 -0.61 16 20 C -0.61 -2.57 6.34 37.18 0.24 -2.34 16 21 S 2.42 18.95 5.31 -107.50 -0.57 18.38 16 22 O -0.93 -10.53 17.94 -57.81 -1.04 -11.57 16 23 O -0.94 -10.75 18.10 -57.81 -1.05 -11.80 16 24 C -0.59 -4.69 5.04 37.18 0.19 -4.50 16 25 C 0.10 1.13 5.92 -3.71 -0.02 1.11 16 26 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 29 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.09 0.49 7.73 -51.93 -0.40 0.08 16 36 H 0.09 0.38 8.01 -51.93 -0.42 -0.03 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.14 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.14 0.98 8.01 -51.93 -0.42 0.57 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.71 5.42 -51.93 -0.28 0.42 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -36.76 364.72 -10.14 -46.89 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.13 Total: 5.69 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.85 Total: -9.21 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.06 Total: -52.37 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -2.00 Total: -31.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 18.95 SS G_CDS: -0.57 Total: 18.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.76 -10.14 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997063849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.687 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds