Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47672 * 270.00349 * 3 2 1 5 5 H 1.48499 * 109.47274 * 30.00504 * 3 2 1 6 6 H 1.48505 * 109.47006 * 150.00057 * 3 2 1 7 7 C 1.38810 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00026 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00432 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49677 * 325.06677 * 10 9 7 12 12 C 1.53038 * 109.49851 * 85.16147 * 10 9 7 13 13 C 1.53041 * 109.54157 * 181.32071 * 12 10 9 14 14 C 1.53629 * 109.24036 * 298.51402 * 13 12 10 15 15 N 1.46921 * 108.54224 * 54.85265 * 14 13 12 16 16 C 1.34780 * 120.63059 * 126.36706 * 15 14 13 17 17 O 1.21280 * 120.00423 * 179.71638 * 16 15 14 18 18 C 1.50701 * 119.99795 * 359.72315 * 16 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.01268 * 53.61448 * 19 18 16 21 21 C 1.53870 * 110.03045 * 174.99909 * 19 18 16 22 22 C 1.54169 * 108.70910 * 166.47223 * 21 19 18 23 23 S 1.82918 * 105.08237 * 332.09395 * 22 21 19 24 24 O 1.42098 * 109.35736 * 115.52244 * 23 22 21 25 25 O 1.42105 * 109.35189 * 248.59307 * 23 22 21 26 26 C 1.55049 * 110.02794 * 292.19280 * 19 18 16 27 27 C 1.46926 * 118.74177 * 306.09309 * 15 14 13 28 28 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00345 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.45933 * 301.34391 * 12 10 9 31 31 H 1.08999 * 109.46091 * 61.31382 * 12 10 9 32 32 H 1.08999 * 109.49703 * 58.58431 * 13 12 10 33 33 H 1.08993 * 109.50252 * 178.64925 * 13 12 10 34 34 H 1.08998 * 109.73882 * 295.11761 * 14 13 12 35 35 H 1.08999 * 109.66251 * 174.54792 * 14 13 12 36 36 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 37 37 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 38 38 H 1.08998 * 109.64967 * 286.32519 * 21 19 18 39 39 H 1.09000 * 109.64859 * 46.62246 * 21 19 18 40 40 H 1.08996 * 110.31779 * 90.98952 * 22 21 19 41 41 H 1.08990 * 110.32083 * 213.19120 * 22 21 19 42 42 H 1.09001 * 110.78937 * 316.53886 * 26 19 18 43 43 H 1.09003 * 110.79477 * 80.00524 * 26 19 18 44 44 H 1.09003 * 109.58886 * 173.64878 * 27 15 14 45 45 H 1.08992 * 109.58644 * 293.93160 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 1 3.5649 -3.2075 0.5859 12 6 4.2617 -2.9730 -1.4401 13 6 4.9981 -4.3146 -1.4397 14 6 6.4022 -4.1213 -0.8470 15 7 6.2682 -3.5065 0.4807 16 6 6.8425 -4.0725 1.5607 17 8 6.7290 -3.5525 2.6504 18 6 7.6258 -5.3516 1.4141 19 6 8.1683 -5.7768 2.7800 20 1 7.3554 -5.8292 3.5044 21 6 8.8637 -7.1448 2.6683 22 6 9.6850 -7.3883 3.9501 23 16 10.1305 -5.7201 4.5539 24 8 9.5106 -5.4935 5.8123 25 8 11.5307 -5.5254 4.4094 26 6 9.2449 -4.7699 3.2607 27 6 5.5015 -2.2596 0.6077 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.2747 -3.1006 -1.8846 31 1 4.8305 -2.2470 -2.0210 32 1 4.4426 -5.0343 -0.8384 33 1 5.0831 -4.6833 -2.4619 34 1 6.9884 -3.4691 -1.4942 35 1 6.8972 -5.0880 -0.7538 36 1 6.9752 -6.1332 1.0218 37 1 8.4570 -5.1920 0.7271 38 1 8.1146 -7.9289 2.5587 39 1 9.5259 -7.1498 1.8025 40 1 9.0818 -7.9108 4.6925 41 1 10.5839 -7.9603 3.7208 42 1 9.9185 -4.5052 2.4456 43 1 8.7803 -3.8796 3.6847 44 1 5.4021 -1.9974 1.6611 45 1 6.0171 -1.4581 0.0788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999637527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -95.504074 kcal Electronic energy + Delta-G solvation = -26726.396589 eV Core-core repulsion = 22871.294307 eV Total energy + Delta-G solvation = -3855.102282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.37983 -38.04411 -37.29774 -36.79669 -36.23846 -34.72820 -32.35958 -31.67332 -31.27725 -29.37602 -28.21860 -25.60361 -24.63512 -23.52780 -22.05305 -21.27649 -20.16612 -19.17280 -18.96022 -17.72211 -17.50618 -17.05507 -16.68692 -16.07146 -15.75223 -15.47478 -14.91007 -14.73873 -14.60788 -14.20770 -14.01168 -13.89614 -13.71281 -13.32983 -13.05986 -12.81422 -12.68000 -12.56425 -12.44821 -12.35387 -12.31780 -12.25068 -11.85426 -11.47701 -11.30293 -11.18064 -11.05597 -11.00382 -10.76286 -10.60165 -10.55370 -10.47891 -10.13681 -9.77989 -9.64148 -8.99045 -8.57611 -7.34950 -5.82015 -3.19010 -0.26669 2.21859 2.55926 2.88364 3.27918 3.34645 3.37436 3.43093 3.64386 3.89948 4.05454 4.13356 4.38843 4.43177 4.54710 4.58901 4.70609 4.83535 4.95801 5.00382 5.06604 5.15371 5.16097 5.19780 5.25968 5.30701 5.39788 5.45228 5.57636 5.61236 5.63115 5.63949 5.82705 5.96088 6.02663 6.22648 6.36986 6.49189 6.71707 6.87194 7.39286 7.92036 8.12917 8.36274 9.13560 9.86016 10.04484 11.36006 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002568 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.146389 B =10902.488435 C =11621.601639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.511 3.489 17 O -0.538 6.538 18 C -0.126 4.126 19 C -0.075 4.075 20 H 0.106 0.894 21 C -0.111 4.111 22 C -0.594 4.594 23 S 2.384 3.616 24 O -0.935 6.935 25 O -0.945 6.945 26 C -0.579 4.579 27 C 0.102 3.898 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.152 0.848 44 H 0.094 0.906 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.749 -17.688 -0.391 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.179 4.179 13 C -0.172 4.172 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.298 3.702 17 O -0.416 6.416 18 C -0.167 4.167 19 C -0.095 4.095 20 H 0.125 0.875 21 C -0.149 4.149 22 C -0.724 4.724 23 S 2.568 3.432 24 O -0.932 6.932 25 O -0.942 6.942 26 C -0.709 4.709 27 C -0.021 4.021 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.987 -17.169 1.014 27.915 hybrid contribution -0.027 0.983 -0.921 1.347 sum 21.961 -16.186 0.093 27.281 Atomic orbital electron populations 1.69699 1.05123 1.25942 1.57175 1.24672 0.95238 0.97259 1.01794 0.86551 0.79302 0.84940 0.77737 1.21069 1.21655 1.20249 1.19016 0.80266 0.94737 1.43450 0.89187 1.42672 1.04112 1.01705 1.90280 1.20442 0.90009 0.89704 0.93550 0.92355 1.22252 1.00674 0.94754 1.00188 1.22005 0.95153 0.99405 1.00659 1.21906 0.98186 0.98010 0.83621 1.48101 1.52086 1.25955 1.07735 1.20503 0.79579 0.86083 0.83989 1.90699 1.60838 1.64281 1.25738 1.21639 1.00882 0.96514 0.97691 1.21643 0.97644 0.91327 0.98926 0.87547 1.21983 0.99792 0.97381 0.95757 1.30490 1.10520 1.22758 1.08584 1.09203 0.76101 0.80084 0.77823 1.93637 1.77983 1.83764 1.37837 1.93605 1.28802 1.84408 1.87352 1.30750 1.10618 1.11817 1.17730 1.22017 0.92152 0.84483 1.03423 0.92970 0.80584 0.91028 0.92574 0.91607 0.91167 0.91279 0.90101 0.87890 0.88276 0.88682 0.89509 0.84498 0.84467 0.84728 0.83005 0.88764 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.83 27.73 -169.99 -4.71 17.11 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.75 -17.02 4.93 -53.31 -0.26 -17.28 16 10 C 0.17 3.15 2.92 -67.81 -0.20 2.95 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C -0.14 -2.10 5.46 -26.69 -0.15 -2.25 16 13 C -0.13 -1.41 6.10 -26.38 -0.16 -1.57 16 14 C 0.11 0.93 6.37 -3.49 -0.02 0.90 16 15 N -0.61 -7.34 2.97 -172.51 -0.51 -7.85 16 16 C 0.51 6.06 7.48 -10.98 -0.08 5.98 16 17 O -0.54 -8.51 13.85 5.56 0.08 -8.43 16 18 C -0.13 -0.82 3.53 -27.88 -0.10 -0.92 16 19 C -0.08 -0.48 2.21 -89.09 -0.20 -0.68 16 20 H 0.11 0.81 7.92 -51.93 -0.41 0.40 16 21 C -0.11 -0.39 5.75 -25.67 -0.15 -0.53 16 22 C -0.59 -2.46 7.26 37.77 0.27 -2.18 16 23 S 2.38 18.95 6.10 -107.50 -0.66 18.29 16 24 O -0.94 -11.60 18.15 -57.73 -1.05 -12.65 16 25 O -0.94 -10.59 18.15 -57.73 -1.05 -11.64 16 26 C -0.58 -4.24 6.11 38.24 0.23 -4.00 16 27 C 0.10 1.60 5.90 -3.71 -0.02 1.58 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.36 8.13 5.66 -40.82 -0.23 7.89 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 36 H 0.10 0.46 7.70 -51.93 -0.40 0.06 16 37 H 0.10 0.41 7.88 -51.93 -0.41 0.00 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.15 8.10 -51.93 -0.42 -0.27 16 40 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.13 0.70 8.06 -51.93 -0.42 0.29 16 43 H 0.15 1.46 6.92 -51.93 -0.36 1.10 16 44 H 0.09 1.69 7.01 -51.93 -0.36 1.33 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -38.86 364.49 -9.85 -48.71 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.14 Total: 3.95 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.82 Total: -7.54 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.00 Total: -53.30 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -2.02 Total: -32.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: 18.95 SS G_CDS: -0.66 Total: 18.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.86 -9.85 -48.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999637527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.791 kcal (2) G-P(sol) polarization free energy of solvation -38.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds