Wall clock time and date at job start Tue Mar 31 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47672 * 270.00349 * 3 2 1 5 5 H 1.48499 * 109.47274 * 30.00504 * 3 2 1 6 6 H 1.48505 * 109.47006 * 150.00057 * 3 2 1 7 7 C 1.38810 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00026 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00432 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49677 * 325.06677 * 10 9 7 12 12 C 1.53038 * 109.49851 * 85.16147 * 10 9 7 13 13 C 1.53041 * 109.54157 * 181.32071 * 12 10 9 14 14 C 1.53629 * 109.24036 * 298.51402 * 13 12 10 15 15 N 1.46921 * 108.54224 * 54.85265 * 14 13 12 16 16 C 1.34780 * 120.63059 * 126.36706 * 15 14 13 17 17 O 1.21280 * 120.00423 * 179.71638 * 16 15 14 18 18 C 1.50701 * 119.99795 * 359.72315 * 16 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.01268 * 53.61448 * 19 18 16 21 21 C 1.53870 * 110.03045 * 174.99909 * 19 18 16 22 22 C 1.54169 * 108.70910 * 166.47223 * 21 19 18 23 23 S 1.82918 * 105.08237 * 332.09395 * 22 21 19 24 24 O 1.42098 * 109.35736 * 115.52244 * 23 22 21 25 25 O 1.42105 * 109.35189 * 248.59307 * 23 22 21 26 26 C 1.55049 * 110.02794 * 292.19280 * 19 18 16 27 27 C 1.46926 * 118.74177 * 306.09309 * 15 14 13 28 28 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00345 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.45933 * 301.34391 * 12 10 9 31 31 H 1.08999 * 109.46091 * 61.31382 * 12 10 9 32 32 H 1.08999 * 109.49703 * 58.58431 * 13 12 10 33 33 H 1.08993 * 109.50252 * 178.64925 * 13 12 10 34 34 H 1.08998 * 109.73882 * 295.11761 * 14 13 12 35 35 H 1.08999 * 109.66251 * 174.54792 * 14 13 12 36 36 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 37 37 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 38 38 H 1.08998 * 109.64967 * 286.32519 * 21 19 18 39 39 H 1.09000 * 109.64859 * 46.62246 * 21 19 18 40 40 H 1.08996 * 110.31779 * 90.98952 * 22 21 19 41 41 H 1.08990 * 110.32083 * 213.19120 * 22 21 19 42 42 H 1.09001 * 110.78937 * 316.53886 * 26 19 18 43 43 H 1.09003 * 110.79477 * 80.00524 * 26 19 18 44 44 H 1.09003 * 109.58886 * 173.64878 * 27 15 14 45 45 H 1.08992 * 109.58644 * 293.93160 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 1 3.5649 -3.2075 0.5859 12 6 4.2617 -2.9730 -1.4401 13 6 4.9981 -4.3146 -1.4397 14 6 6.4022 -4.1213 -0.8470 15 7 6.2682 -3.5065 0.4807 16 6 6.8425 -4.0725 1.5607 17 8 6.7290 -3.5525 2.6504 18 6 7.6258 -5.3516 1.4141 19 6 8.1683 -5.7768 2.7800 20 1 7.3554 -5.8292 3.5044 21 6 8.8637 -7.1448 2.6683 22 6 9.6850 -7.3883 3.9501 23 16 10.1305 -5.7201 4.5539 24 8 9.5106 -5.4935 5.8123 25 8 11.5307 -5.5254 4.4094 26 6 9.2449 -4.7699 3.2607 27 6 5.5015 -2.2596 0.6077 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.2747 -3.1006 -1.8846 31 1 4.8305 -2.2470 -2.0210 32 1 4.4426 -5.0343 -0.8384 33 1 5.0831 -4.6833 -2.4619 34 1 6.9884 -3.4691 -1.4942 35 1 6.8972 -5.0880 -0.7538 36 1 6.9752 -6.1332 1.0218 37 1 8.4570 -5.1920 0.7271 38 1 8.1146 -7.9289 2.5587 39 1 9.5259 -7.1498 1.8025 40 1 9.0818 -7.9108 4.6925 41 1 10.5839 -7.9603 3.7208 42 1 9.9185 -4.5052 2.4456 43 1 8.7803 -3.8796 3.6847 44 1 5.4021 -1.9974 1.6611 45 1 6.0171 -1.4581 0.0788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999637527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:43 Heat of formation + Delta-G solvation = -127.079906 kcal Electronic energy + Delta-G solvation = -26727.765820 eV Core-core repulsion = 22871.294307 eV Total energy + Delta-G solvation = -3856.471513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29852 -39.03140 -38.05188 -37.51481 -36.97110 -36.29510 -33.96412 -32.87991 -32.07410 -30.62417 -29.05340 -26.44617 -25.76582 -24.78174 -23.31486 -21.95429 -21.33243 -20.11783 -19.79333 -19.45370 -18.26781 -17.70829 -17.39746 -16.90517 -16.70003 -16.51093 -16.31456 -15.81602 -15.36937 -15.26948 -15.16699 -14.85109 -14.73358 -14.53949 -14.09031 -13.99179 -13.87854 -13.33719 -13.21217 -13.15747 -13.07196 -12.97820 -12.76496 -12.73125 -12.50975 -12.33198 -12.13755 -12.00093 -11.83115 -11.75668 -11.72131 -11.61074 -11.54904 -11.08756 -10.96365 -10.70942 -9.65270 -9.32242 -8.05938 -5.40271 -0.83890 1.35319 1.38865 1.45829 1.67826 1.71413 2.00442 2.45273 2.73469 3.08924 3.25372 3.40471 3.52386 3.57593 3.69966 3.91243 3.98300 4.00879 4.09274 4.14858 4.21122 4.25799 4.35559 4.35956 4.58403 4.64456 4.73390 4.76697 4.81485 4.84470 4.89023 4.93546 4.96156 5.07280 5.18806 5.20605 5.27656 5.42141 5.50821 5.54725 5.73999 6.17665 6.52267 7.03049 7.25195 7.78140 7.97056 9.15517 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002568 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.146389 B =10902.488435 C =11621.601639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.228 4.228 8 H 0.054 0.946 9 N -0.751 5.751 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.131 4.131 13 C -0.126 4.126 14 C 0.104 3.896 15 N -0.608 5.608 16 C 0.499 3.501 17 O -0.590 6.590 18 C -0.119 4.119 19 C -0.081 4.081 20 H 0.084 0.916 21 C -0.105 4.105 22 C -0.562 4.562 23 S 2.371 3.629 24 O -0.996 6.996 25 O -0.985 6.985 26 C -0.574 4.574 27 C 0.113 3.887 28 H 0.258 0.742 29 H 0.365 0.635 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.120 0.880 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.051 -20.320 -3.094 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.359 4.359 8 H 0.072 0.928 9 N -0.395 5.395 10 C 0.060 3.940 11 H 0.048 0.952 12 C -0.171 4.171 13 C -0.165 4.165 14 C -0.017 4.017 15 N -0.341 5.341 16 C 0.290 3.710 17 O -0.470 6.470 18 C -0.159 4.159 19 C -0.101 4.101 20 H 0.102 0.898 21 C -0.143 4.143 22 C -0.695 4.695 23 S 2.562 3.438 24 O -0.994 6.994 25 O -0.982 6.982 26 C -0.706 4.706 27 C -0.011 4.011 28 H 0.067 0.933 29 H 0.198 0.802 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.138 0.862 44 H 0.080 0.920 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 25.376 -19.824 -1.688 32.246 hybrid contribution -1.122 1.666 -0.092 2.010 sum 24.255 -18.158 -1.780 30.351 Atomic orbital electron populations 1.69882 1.07130 1.26730 1.59639 1.25504 0.96125 1.01276 1.02606 0.85401 0.78488 0.79567 0.78259 1.19880 1.22427 1.18010 1.18941 0.82388 0.93312 1.41305 0.92776 1.42686 1.02567 1.03779 1.90452 1.20637 0.90700 0.87063 0.95558 0.95240 1.22073 0.99987 0.98052 0.97018 1.21981 0.95749 0.95918 1.02833 1.22242 0.97189 1.00670 0.81587 1.48231 1.51378 1.24778 1.09664 1.21659 0.79145 0.87338 0.82866 1.90697 1.62597 1.65933 1.27822 1.21793 1.01862 0.93796 0.98433 1.21734 0.96930 0.92842 0.98642 0.89804 1.22093 1.00609 0.95557 0.96060 1.30279 1.12067 1.17950 1.09213 1.09248 0.75000 0.82283 0.77253 1.93554 1.78521 1.85657 1.41642 1.93542 1.31039 1.85965 1.87702 1.30645 1.11140 1.10929 1.17854 1.21560 0.91231 0.87160 1.01166 0.93295 0.80152 0.94291 0.91762 0.92113 0.88006 0.89552 0.85088 0.84454 0.84231 0.86171 0.86075 0.83367 0.81711 0.82238 0.86197 0.91996 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 45.89 27.73 68.60 1.90 47.79 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.26 -11.21 6.52 99.48 0.65 -10.56 16 7 C -0.23 -13.10 10.41 84.03 0.88 -12.22 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.75 -35.01 4.93 -322.57 -1.59 -36.60 16 10 C 0.17 6.23 2.92 45.07 0.13 6.37 16 11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 12 C -0.13 -3.86 5.46 30.62 0.17 -3.69 16 13 C -0.13 -2.21 6.10 30.82 0.19 -2.02 16 14 C 0.10 1.27 6.37 86.51 0.55 1.82 16 15 N -0.61 -13.13 2.97 -818.07 -2.43 -15.56 16 16 C 0.50 10.73 7.48 87.66 0.66 11.38 16 17 O -0.59 -18.98 13.85 -3.03 -0.04 -19.03 16 18 C -0.12 -0.92 3.53 29.85 0.11 -0.81 16 19 C -0.08 -0.77 2.21 -9.80 -0.02 -0.79 16 20 H 0.08 1.19 7.92 -2.38 -0.02 1.17 16 21 C -0.11 -0.12 5.75 31.28 0.18 0.06 16 22 C -0.56 -2.44 7.26 72.38 0.53 -1.91 16 23 S 2.37 37.20 6.10 -56.49 -0.34 36.86 16 24 O -1.00 -26.68 18.15 -127.47 -2.31 -28.99 16 25 O -0.99 -22.10 18.15 -127.47 -2.31 -24.41 16 26 C -0.57 -7.74 6.11 72.68 0.44 -7.30 16 27 C 0.11 3.51 5.90 86.36 0.51 4.02 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.11 16 29 H 0.37 16.32 5.66 -92.71 -0.52 15.79 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 0.37 5.93 -2.39 -0.01 0.36 16 36 H 0.14 0.23 7.70 -2.39 -0.02 0.22 16 37 H 0.14 0.05 7.88 -2.39 -0.02 0.03 16 38 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.12 -0.55 8.10 -2.39 -0.02 -0.57 16 40 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.16 1.22 8.06 -2.39 -0.02 1.21 16 43 H 0.12 2.49 6.92 -2.39 -0.02 2.47 16 44 H 0.06 2.31 7.01 -2.39 -0.02 2.30 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -95.02 364.49 -1.64 -96.66 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.41 Total: 14.95 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.78 Total: -8.42 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.71 Total: -115.41 kcal Atomic # 8 Polarization: -67.76 SS G_CDS: -4.67 Total: -72.43 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Atomic # 16 Polarization: 37.20 SS G_CDS: -0.34 Total: 36.86 kcal Total: -95.02 -1.64 -96.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999637527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.421 kcal (2) G-P(sol) polarization free energy of solvation -95.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds