Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99856 * 2 1 4 4 H 1.48504 * 109.46698 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46909 * 120.00337 * 3 2 1 7 7 C 1.38815 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00000 * 197.35192 * 7 2 1 9 9 N 1.36930 * 119.99720 * 17.34405 * 7 2 1 10 10 C 1.46998 * 120.61644 * 27.69315 * 9 7 2 11 11 C 1.53192 * 108.74154 * 126.38326 * 10 9 7 12 12 C 1.53045 * 109.33739 * 54.62332 * 11 10 9 13 13 C 1.53043 * 109.53638 * 298.62106 * 12 11 10 14 14 H 1.08996 * 109.49819 * 301.37898 * 13 12 11 15 15 N 1.46501 * 109.49481 * 181.31520 * 13 12 11 16 16 C 1.34779 * 119.99836 * 154.99701 * 15 13 12 17 17 O 1.21275 * 120.00169 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99928 * 180.02562 * 16 15 13 19 19 H 1.08996 * 109.38368 * 300.00547 * 18 16 15 20 20 C 1.52588 * 109.38461 * 180.21132 * 18 16 15 21 21 C 1.52591 * 110.63977 * 169.85548 * 20 18 16 22 22 C 1.53040 * 109.98709 * 69.99104 * 21 20 18 23 23 S 1.81677 * 108.99484 * 296.35032 * 22 21 20 24 24 O 1.42094 * 108.66051 * 168.62990 * 23 22 21 25 25 O 1.42101 * 108.65963 * 299.87111 * 23 22 21 26 26 C 1.53041 * 109.38498 * 59.79314 * 18 16 15 27 27 C 1.46925 * 120.63220 * 207.66862 * 9 7 2 28 28 H 0.97007 * 120.00009 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.62991 * 6.59309 * 10 9 7 30 30 H 1.08995 * 109.58258 * 246.14916 * 10 9 7 31 31 H 1.09004 * 109.49574 * 294.65676 * 11 10 9 32 32 H 1.09000 * 109.50016 * 174.59299 * 11 10 9 33 33 H 1.08997 * 109.45682 * 58.64055 * 12 11 10 34 34 H 1.08998 * 109.45487 * 178.61456 * 12 11 10 35 35 H 0.96997 * 119.99836 * 335.00670 * 15 13 12 36 36 H 1.08998 * 109.24332 * 290.15717 * 20 18 16 37 37 H 1.08991 * 109.24009 * 49.55665 * 20 18 16 38 38 H 1.09003 * 109.38211 * 190.14529 * 21 20 18 39 39 H 1.08999 * 109.38825 * 309.93443 * 21 20 18 40 40 H 1.09001 * 109.54864 * 56.20034 * 22 21 20 41 41 H 1.08995 * 109.55076 * 176.40015 * 22 21 20 42 42 H 1.09005 * 109.55076 * 303.66018 * 26 18 16 43 43 H 1.08993 * 109.55122 * 63.94731 * 26 18 16 44 44 H 1.09004 * 109.58839 * 113.84642 * 27 9 7 45 45 H 1.08999 * 109.70556 * 353.48797 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3546 10 6 0.2273 -2.3336 -1.2760 11 6 0.5011 -3.3031 -2.4301 12 6 0.8194 -4.6886 -1.8634 13 6 2.0751 -4.6090 -0.9920 14 1 2.9089 -4.2388 -1.5885 15 7 2.3970 -5.9416 -0.4755 16 6 3.6641 -6.2414 -0.1276 17 8 4.5377 -5.4080 -0.2417 18 6 3.9954 -7.6124 0.4033 19 1 3.4212 -7.7973 1.3110 20 6 5.4857 -7.6852 0.7229 21 6 5.8092 -8.9634 1.4909 22 6 5.6646 -10.1775 0.5706 23 16 3.9311 -10.3180 0.0450 24 8 3.8503 -11.2720 -1.0050 25 8 3.1182 -10.4831 1.1987 26 6 3.6362 -8.6647 -0.6483 27 6 1.8196 -3.6547 0.1788 28 1 -0.4850 0.8401 0.0004 29 1 0.0974 -1.3252 -1.6689 30 1 -0.6748 -2.6408 -0.7469 31 1 1.3496 -2.9446 -3.0129 32 1 -0.3793 -3.3651 -3.0698 33 1 -0.0196 -5.0358 -1.2604 34 1 0.9904 -5.3858 -2.6836 35 1 1.6983 -6.6081 -0.3840 36 1 6.0537 -7.6715 -0.2073 37 1 5.7660 -6.8224 1.3270 38 1 6.8321 -8.9121 1.8641 39 1 5.1222 -9.0644 2.3312 40 1 6.3018 -10.0498 -0.3045 41 1 5.9586 -11.0793 1.1075 42 1 2.5848 -8.5662 -0.9186 43 1 4.2565 -8.5227 -1.5331 44 1 1.0473 -4.0697 0.8266 45 1 2.7397 -3.5196 0.7474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008732385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -95.978708 kcal Electronic energy + Delta-G solvation = -27137.322298 eV Core-core repulsion = 23282.199434 eV Total energy + Delta-G solvation = -3855.122864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.21087 -37.88974 -37.37645 -36.50173 -36.39231 -34.43023 -32.85216 -32.08443 -30.49288 -28.68870 -28.10666 -25.31776 -24.90967 -22.57536 -22.13380 -21.29994 -20.12924 -19.34895 -19.25574 -17.71047 -16.91667 -16.80021 -16.47118 -16.03390 -15.70458 -15.63476 -14.81363 -14.62373 -14.44367 -14.13965 -13.99242 -13.59856 -13.47035 -13.30584 -13.14922 -12.54356 -12.44798 -12.44374 -12.39986 -12.27891 -11.95807 -11.81929 -11.74078 -11.41264 -11.25756 -11.11859 -10.92732 -10.80096 -10.73574 -10.30324 -10.27667 -9.96185 -9.93563 -9.68061 -9.50487 -8.89710 -8.42640 -6.70074 -5.80167 -3.22408 -0.41429 2.18734 2.63266 3.17477 3.24268 3.39750 3.44601 3.47361 3.51693 4.04305 4.05818 4.20302 4.30956 4.41924 4.50836 4.70383 4.81595 4.92205 5.09187 5.16144 5.24535 5.28070 5.34944 5.47537 5.50680 5.58526 5.67018 5.68673 5.86416 6.02828 6.10348 6.19172 6.48063 6.56753 6.60733 6.64283 6.79256 6.93528 7.32846 7.61884 7.62162 7.80818 8.29640 8.44177 9.20049 9.82456 10.37966 11.28567 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002738 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.330573 B =10224.942158 C =10951.578514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.087 0.913 15 N -0.720 5.720 16 C 0.521 3.479 17 O -0.529 6.529 18 C -0.097 4.097 19 H 0.118 0.882 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.604 4.604 23 S 2.421 3.579 24 O -0.942 6.942 25 O -0.933 6.933 26 C -0.601 4.601 27 C 0.142 3.858 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.395 0.605 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.018 0.982 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -21.110 -0.832 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.105 0.895 15 N -0.371 5.371 16 C 0.305 3.695 17 O -0.405 6.405 18 C -0.120 4.120 19 H 0.136 0.864 20 C -0.162 4.162 21 C -0.148 4.148 22 C -0.733 4.733 23 S 2.603 3.397 24 O -0.939 6.939 25 O -0.930 6.930 26 C -0.730 4.730 27 C 0.015 3.985 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.035 0.965 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.076 -21.055 -0.847 22.567 hybrid contribution 0.502 1.100 -0.156 1.219 sum 8.578 -19.955 -1.003 21.744 Atomic orbital electron populations 1.70028 1.05254 1.25655 1.53874 1.25019 0.95288 0.98409 1.00820 0.86349 0.78914 0.83181 0.78240 1.20965 1.21621 1.20835 1.19175 0.92801 0.84729 1.41525 0.91606 1.44001 1.35619 1.01012 1.50406 1.20860 0.88565 0.98588 0.87838 1.22181 1.00459 0.95137 1.00156 1.21689 0.96770 0.98666 0.98254 1.21800 0.97870 0.81140 0.97281 0.89516 1.46161 1.09111 1.15958 1.65824 1.20069 0.82915 0.88513 0.78009 1.90749 1.46907 1.49683 1.53121 1.21091 0.99627 0.92870 0.98384 0.86450 1.21570 0.93040 0.98940 1.02680 1.21318 1.05334 0.90597 0.97541 1.30256 1.24544 1.07698 1.10837 1.08006 0.78564 0.77206 0.75948 1.93606 1.86147 1.57058 1.57060 1.93607 1.65278 1.84801 1.49288 1.30352 1.12249 1.20165 1.10214 1.21172 0.97953 0.86853 0.92555 0.93568 0.89229 0.96268 0.92438 0.92682 0.92163 0.93114 0.77202 0.89973 0.88217 0.88972 0.89503 0.84737 0.84705 0.84327 0.84070 0.96456 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.19 16 8 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -14.74 3.00 -172.26 -0.52 -15.26 16 10 C 0.17 3.89 5.31 -3.67 -0.02 3.87 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.12 -1.79 5.35 -26.69 -0.14 -1.93 16 13 C 0.12 2.12 2.61 -67.81 -0.18 1.94 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 15 N -0.72 -9.34 4.95 -53.69 -0.27 -9.61 16 16 C 0.52 6.82 7.11 -10.99 -0.08 6.75 16 17 O -0.53 -9.23 15.45 5.56 0.09 -9.14 16 18 C -0.10 -0.81 2.36 -91.96 -0.22 -1.03 16 19 H 0.12 0.82 8.01 -51.93 -0.42 0.41 16 20 C -0.12 -0.91 4.37 -27.15 -0.12 -1.03 16 21 C -0.11 -0.56 5.73 -26.92 -0.15 -0.71 16 22 C -0.60 -2.62 6.35 37.18 0.24 -2.39 16 23 S 2.42 16.61 5.30 -107.50 -0.57 16.04 16 24 O -0.94 -9.84 18.10 -57.82 -1.05 -10.89 16 25 O -0.93 -9.42 17.95 -57.82 -1.04 -10.46 16 26 C -0.60 -3.76 5.55 37.18 0.21 -3.55 16 27 C 0.14 3.02 6.09 -3.71 -0.02 3.00 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.39 3.85 7.96 -40.82 -0.32 3.52 16 36 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.10 0.88 7.73 -51.93 -0.40 0.48 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.42 8.01 -51.93 -0.42 0.01 16 40 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.14 0.71 7.45 -51.92 -0.39 0.32 16 43 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.31 7.94 -51.93 -0.41 0.90 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -37.14 364.66 -10.40 -47.54 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.26 Total: -0.11 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.88 Total: -4.97 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.16 Total: -50.36 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -2.00 Total: -30.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Atomic # 16 Polarization: 16.61 SS G_CDS: -0.57 Total: 16.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.14 -10.40 -47.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008732385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.434 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds