Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48511 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 119.99821 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 H 1.09002 * 110.71751 * 153.86437 * 12 11 10 14 14 N 1.46504 * 110.71935 * 277.13806 * 12 11 10 15 15 C 1.34773 * 119.99619 * 199.97832 * 14 12 11 16 16 O 1.21283 * 120.00303 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99661 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47116 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.39016 * 305.00536 * 18 17 15 20 20 C 1.52587 * 109.38759 * 185.21042 * 18 17 15 21 21 C 1.52584 * 110.64549 * 169.85758 * 20 18 17 22 22 C 1.53047 * 109.98670 * 69.98753 * 21 20 18 23 23 S 1.81672 * 108.99760 * 296.35378 * 22 21 20 24 24 O 1.42097 * 108.66382 * 168.62394 * 23 22 21 25 25 O 1.42100 * 108.66296 * 299.87264 * 23 22 21 26 26 C 1.53042 * 109.38175 * 64.79139 * 18 17 15 27 27 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 30 30 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 31 31 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 32 32 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 33 33 H 0.96994 * 119.99856 * 19.97532 * 14 12 11 34 34 H 1.09000 * 109.47218 * 300.00144 * 17 15 14 35 35 H 1.09007 * 109.46852 * 59.99796 * 17 15 14 36 36 H 1.09003 * 109.24066 * 290.15871 * 20 18 17 37 37 H 1.08997 * 109.24374 * 49.55819 * 20 18 17 38 38 H 1.08996 * 109.39121 * 190.14310 * 21 20 18 39 39 H 1.09000 * 109.38554 * 309.83160 * 21 20 18 40 40 H 1.08998 * 109.54529 * 56.20903 * 22 21 20 41 41 H 1.08998 * 109.55076 * 176.39859 * 22 21 20 42 42 H 1.09002 * 109.54872 * 303.65772 * 26 18 17 43 43 H 1.08995 * 109.54786 * 63.95237 * 26 18 17 44 44 H 1.08997 * 109.88723 * 59.48965 * 27 9 7 45 45 H 1.08998 * 109.88661 * 298.31946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 6 0.7787 -4.7525 0.0273 13 1 1.0250 -5.5922 0.6772 14 7 0.4649 -5.2173 -1.3261 15 6 1.1440 -6.2533 -1.8571 16 8 2.0151 -6.8005 -1.2148 17 6 0.8208 -6.7318 -3.2492 18 6 1.7296 -7.9092 -3.6075 19 1 2.7712 -7.6146 -3.4792 20 6 1.4917 -8.3087 -5.0608 21 6 2.5491 -9.3062 -5.5246 22 6 2.3378 -10.6534 -4.8297 23 16 2.5799 -10.4410 -3.0418 24 8 2.1291 -11.6145 -2.3793 25 8 3.9043 -9.9791 -2.8140 26 6 1.4185 -9.0901 -2.6851 27 6 1.9320 -3.7274 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5987 -1.7588 0.6167 30 1 -0.5283 -2.4851 -1.0170 31 1 -1.3585 -4.3328 0.2808 32 1 -0.3501 -3.8979 1.7016 33 1 -0.2315 -4.7794 -1.8400 34 1 -0.2207 -7.0503 -3.2912 35 1 0.9815 -5.9201 -3.9588 36 1 0.5050 -8.7629 -5.1516 37 1 1.5363 -7.4196 -5.6897 38 1 2.4720 -9.4398 -6.6036 39 1 3.5397 -8.9238 -5.2788 40 1 1.3249 -11.0075 -5.0211 41 1 3.0561 -11.3781 -5.2130 42 1 1.5294 -8.7802 -1.6459 43 1 0.3975 -9.4296 -2.8590 44 1 2.5590 -3.8505 0.8825 45 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015957083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -89.911293 kcal Electronic energy + Delta-G solvation = -26869.736396 eV Core-core repulsion = 23014.876635 eV Total energy + Delta-G solvation = -3854.859761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02758 -38.09597 -37.20318 -36.78328 -36.16211 -33.88423 -33.13564 -31.85051 -29.40352 -28.54396 -27.94834 -26.90777 -24.52849 -23.27491 -21.24620 -20.36124 -20.19518 -19.80835 -19.05322 -17.20346 -17.00444 -16.79887 -16.67203 -15.98655 -15.78333 -15.56464 -14.88158 -14.72242 -14.59498 -14.11130 -13.84710 -13.65823 -13.42275 -13.20122 -12.84615 -12.70009 -12.32568 -12.26169 -12.16332 -12.06441 -11.75736 -11.70575 -11.65203 -11.59211 -11.15810 -11.08961 -10.89761 -10.83753 -10.78478 -10.44913 -10.36347 -10.17719 -9.93299 -9.65866 -9.52338 -8.77132 -8.64036 -6.87419 -5.69599 -3.10472 -0.17454 2.48335 2.77625 3.33474 3.38911 3.42961 3.44293 3.47890 3.65912 4.15595 4.17343 4.35874 4.39159 4.46882 4.50396 4.76133 4.83497 5.03559 5.10255 5.14126 5.22755 5.30277 5.39287 5.41759 5.45017 5.48753 5.49841 5.55676 5.72108 5.78357 5.82902 5.89231 6.23046 6.32892 6.44407 6.52124 6.70656 7.01358 7.38015 7.58807 7.73538 7.80040 8.30813 8.41831 9.18699 9.79313 10.43551 11.34703 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002473 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.660090 B =11321.252071 C =11547.749870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.153 4.153 12 C 0.130 3.870 13 H 0.087 0.913 14 N -0.709 5.709 15 C 0.509 3.491 16 O -0.544 6.544 17 C -0.132 4.132 18 C -0.061 4.061 19 H 0.102 0.898 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.609 4.609 23 S 2.415 3.585 24 O -0.950 6.950 25 O -0.931 6.931 26 C -0.601 4.601 27 C 0.128 3.872 28 H 0.252 0.748 29 H 0.108 0.892 30 H 0.010 0.990 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.031 0.969 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -19.327 -12.359 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.192 4.192 12 C 0.025 3.975 13 H 0.105 0.895 14 N -0.360 5.360 15 C 0.295 3.705 16 O -0.423 6.423 17 C -0.173 4.173 18 C -0.081 4.081 19 H 0.120 0.880 20 C -0.175 4.175 21 C -0.147 4.147 22 C -0.737 4.737 23 S 2.598 3.402 24 O -0.947 6.947 25 O -0.929 6.929 26 C -0.730 4.730 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.172 0.828 43 H 0.147 0.853 44 H 0.049 0.951 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.700 -19.967 -11.306 23.009 hybrid contribution -0.503 1.442 -0.848 1.747 sum -2.203 -18.525 -12.154 22.265 Atomic orbital electron populations 1.69762 1.04870 1.24889 1.57872 1.24767 0.95747 0.97698 1.02484 0.86137 0.78393 0.82935 0.77949 1.21249 1.21578 1.21126 1.19053 0.90545 0.82450 1.42860 0.90558 1.44510 1.01785 0.99782 1.86919 1.21941 0.84960 0.92433 0.97985 1.23339 0.95790 0.99139 1.00944 1.22002 0.96889 0.96337 0.82292 0.89472 1.46027 1.39136 1.33293 1.17499 1.20556 0.81614 0.79903 0.88422 1.90662 1.31778 1.57127 1.62701 1.21695 1.01537 0.98914 0.95193 1.20651 1.02362 0.92682 0.92364 0.87982 1.21812 0.99665 1.00481 0.95542 1.21255 1.00811 0.90792 1.01886 1.30295 1.11595 1.06390 1.25451 1.08090 0.77152 0.76837 0.78121 1.93580 1.83153 1.45952 1.71976 1.93606 1.33757 1.81857 1.83639 1.30406 1.16142 1.14621 1.11863 1.21679 0.93864 0.85835 0.98530 0.93705 0.87445 0.97192 0.91783 0.90620 0.76521 0.88560 0.88003 0.90544 0.89332 0.89525 0.89542 0.85097 0.85089 0.82789 0.85339 0.95129 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.26 10.09 55.49 0.56 -25.70 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.16 3.39 -170.07 -0.58 -15.74 16 10 C 0.15 3.45 5.87 -2.53 -0.01 3.44 16 11 C -0.15 -2.67 6.64 -24.57 -0.16 -2.83 16 12 C 0.13 2.24 3.24 -66.09 -0.21 2.03 16 13 H 0.09 1.49 7.70 -51.93 -0.40 1.09 16 14 N -0.71 -10.17 5.12 -52.02 -0.27 -10.44 16 15 C 0.51 6.93 7.51 -10.99 -0.08 6.85 16 16 O -0.54 -9.30 13.69 5.56 0.08 -9.23 16 17 C -0.13 -1.13 5.15 -27.88 -0.14 -1.28 16 18 C -0.06 -0.50 1.67 -90.81 -0.15 -0.65 16 19 H 0.10 1.03 7.82 -51.93 -0.41 0.63 16 20 C -0.14 -0.68 4.93 -27.16 -0.13 -0.82 16 21 C -0.11 -0.56 5.73 -26.92 -0.15 -0.71 16 22 C -0.61 -3.24 6.35 37.18 0.24 -3.01 16 23 S 2.42 22.97 5.30 -107.50 -0.57 22.40 16 24 O -0.95 -12.24 18.10 -57.82 -1.05 -13.29 16 25 O -0.93 -12.79 17.95 -57.82 -1.04 -13.83 16 26 C -0.60 -5.13 5.39 37.18 0.20 -4.93 16 27 C 0.13 2.75 6.98 -3.06 -0.02 2.72 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.11 2.80 5.87 -51.93 -0.31 2.50 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.40 5.03 8.62 -40.82 -0.35 4.67 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.74 8.09 -51.92 -0.42 0.32 16 36 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 37 H 0.09 0.36 8.06 -51.93 -0.42 -0.06 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.51 8.02 -51.93 -0.42 0.09 16 40 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.15 1.73 5.87 -51.93 -0.31 1.42 16 43 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -37.24 365.36 -10.49 -47.73 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.21 Total: 1.61 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.89 Total: -5.89 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.28 Total: -51.88 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -2.01 Total: -36.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 22.97 SS G_CDS: -0.57 Total: 22.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.24 -10.49 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015957083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.181 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds