Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48511 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 119.99821 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 H 1.09002 * 110.71751 * 153.86437 * 12 11 10 14 14 N 1.46504 * 110.71935 * 277.13806 * 12 11 10 15 15 C 1.34773 * 119.99619 * 199.97832 * 14 12 11 16 16 O 1.21283 * 120.00303 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99661 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47116 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.39016 * 305.00536 * 18 17 15 20 20 C 1.52587 * 109.38759 * 185.21042 * 18 17 15 21 21 C 1.52584 * 110.64549 * 169.85758 * 20 18 17 22 22 C 1.53047 * 109.98670 * 69.98753 * 21 20 18 23 23 S 1.81672 * 108.99760 * 296.35378 * 22 21 20 24 24 O 1.42097 * 108.66382 * 168.62394 * 23 22 21 25 25 O 1.42100 * 108.66296 * 299.87264 * 23 22 21 26 26 C 1.53042 * 109.38175 * 64.79139 * 18 17 15 27 27 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 30 30 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 31 31 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 32 32 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 33 33 H 0.96994 * 119.99856 * 19.97532 * 14 12 11 34 34 H 1.09000 * 109.47218 * 300.00144 * 17 15 14 35 35 H 1.09007 * 109.46852 * 59.99796 * 17 15 14 36 36 H 1.09003 * 109.24066 * 290.15871 * 20 18 17 37 37 H 1.08997 * 109.24374 * 49.55819 * 20 18 17 38 38 H 1.08996 * 109.39121 * 190.14310 * 21 20 18 39 39 H 1.09000 * 109.38554 * 309.83160 * 21 20 18 40 40 H 1.08998 * 109.54529 * 56.20903 * 22 21 20 41 41 H 1.08998 * 109.55076 * 176.39859 * 22 21 20 42 42 H 1.09002 * 109.54872 * 303.65772 * 26 18 17 43 43 H 1.08995 * 109.54786 * 63.95237 * 26 18 17 44 44 H 1.08997 * 109.88723 * 59.48965 * 27 9 7 45 45 H 1.08998 * 109.88661 * 298.31946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 6 0.7787 -4.7525 0.0273 13 1 1.0250 -5.5922 0.6772 14 7 0.4649 -5.2173 -1.3261 15 6 1.1440 -6.2533 -1.8571 16 8 2.0151 -6.8005 -1.2148 17 6 0.8208 -6.7318 -3.2492 18 6 1.7296 -7.9092 -3.6075 19 1 2.7712 -7.6146 -3.4792 20 6 1.4917 -8.3087 -5.0608 21 6 2.5491 -9.3062 -5.5246 22 6 2.3378 -10.6534 -4.8297 23 16 2.5799 -10.4410 -3.0418 24 8 2.1291 -11.6145 -2.3793 25 8 3.9043 -9.9791 -2.8140 26 6 1.4185 -9.0901 -2.6851 27 6 1.9320 -3.7274 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5987 -1.7588 0.6167 30 1 -0.5283 -2.4851 -1.0170 31 1 -1.3585 -4.3328 0.2808 32 1 -0.3501 -3.8979 1.7016 33 1 -0.2315 -4.7794 -1.8400 34 1 -0.2207 -7.0503 -3.2912 35 1 0.9815 -5.9201 -3.9588 36 1 0.5050 -8.7629 -5.1516 37 1 1.5363 -7.4196 -5.6897 38 1 2.4720 -9.4398 -6.6036 39 1 3.5397 -8.9238 -5.2788 40 1 1.3249 -11.0075 -5.0211 41 1 3.0561 -11.3781 -5.2130 42 1 1.5294 -8.7802 -1.6459 43 1 0.3975 -9.4296 -2.8590 44 1 2.5590 -3.8505 0.8825 45 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015957083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -119.193727 kcal Electronic energy + Delta-G solvation = -26871.006178 eV Core-core repulsion = 23014.876635 eV Total energy + Delta-G solvation = -3856.129543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.12849 -39.23543 -38.26797 -37.64929 -37.02252 -35.47050 -33.83888 -33.48614 -31.08911 -29.62566 -28.72992 -28.11317 -26.41177 -23.94832 -22.18493 -21.98698 -21.26742 -21.06242 -19.77821 -18.97185 -17.99670 -17.71748 -17.45222 -17.24126 -16.72560 -16.60656 -16.18197 -15.94620 -15.60186 -15.45339 -15.08331 -14.51822 -14.48803 -14.16921 -13.89669 -13.75455 -13.54806 -13.40660 -13.18320 -13.16175 -13.04684 -12.96973 -12.78322 -12.35162 -12.26212 -12.23572 -12.18717 -12.10605 -12.05051 -11.84319 -11.63809 -11.47136 -11.43924 -11.03988 -10.75592 -10.62565 -10.00886 -8.90432 -7.79487 -5.23093 -0.86081 1.46081 1.48411 1.54999 1.71571 1.84783 2.28420 2.48509 2.80017 3.03242 3.30299 3.61426 3.63742 3.70461 3.76578 3.80627 3.85597 3.98241 4.07556 4.16434 4.24895 4.30719 4.54228 4.63220 4.65146 4.70888 4.72959 4.75544 4.83037 4.91424 4.93335 5.03828 5.06645 5.06924 5.16033 5.31773 5.42672 5.43604 5.60847 5.65292 5.80188 6.30942 6.66199 7.10697 7.35187 7.76264 8.39298 9.21646 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002473 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.660090 B =11321.252071 C =11547.749870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.622 5.622 10 C 0.155 3.845 11 C -0.132 4.132 12 C 0.144 3.856 13 H 0.092 0.908 14 N -0.707 5.707 15 C 0.501 3.499 16 O -0.585 6.585 17 C -0.125 4.125 18 C -0.065 4.065 19 H 0.069 0.931 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.576 4.576 23 S 2.398 3.602 24 O -0.995 6.995 25 O -0.992 6.992 26 C -0.594 4.594 27 C 0.126 3.874 28 H 0.249 0.751 29 H 0.074 0.926 30 H 0.001 0.999 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.168 0.832 44 H 0.019 0.981 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -20.193 -15.161 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.349 5.349 10 C 0.030 3.970 11 C -0.171 4.171 12 C 0.038 3.962 13 H 0.110 0.890 14 N -0.358 5.358 15 C 0.290 3.710 16 O -0.466 6.466 17 C -0.165 4.165 18 C -0.085 4.085 19 H 0.088 0.912 20 C -0.170 4.170 21 C -0.154 4.154 22 C -0.709 4.709 23 S 2.588 3.412 24 O -0.992 6.992 25 O -0.989 6.989 26 C -0.725 4.725 27 C 0.000 4.000 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.019 0.981 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.187 0.813 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.186 0.814 44 H 0.037 0.963 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.756 -20.859 -14.078 25.444 hybrid contribution 0.168 1.717 -0.024 1.725 sum -3.587 -19.143 -14.103 24.046 Atomic orbital electron populations 1.69995 1.05848 1.25220 1.58182 1.25535 0.96707 1.00572 1.02409 0.85168 0.77231 0.78981 0.78009 1.20655 1.21416 1.20695 1.19337 0.90767 0.84028 1.43254 0.91169 1.44769 1.03025 1.00261 1.86816 1.21769 0.83472 0.94594 0.97156 1.23163 0.97525 0.95640 1.00745 1.21667 0.94979 0.95155 0.84397 0.89046 1.45971 1.39692 1.33667 1.16471 1.21590 0.80443 0.78884 0.90105 1.90666 1.33459 1.58240 1.64209 1.21808 1.03711 0.99468 0.91490 1.20726 1.00611 0.92346 0.94824 0.91222 1.21847 1.01155 1.01362 0.92646 1.21390 1.00264 0.90294 1.03443 1.30040 1.14386 1.07468 1.18996 1.08167 0.76186 0.76197 0.80614 1.93515 1.83327 1.47617 1.74731 1.93528 1.37114 1.82496 1.85764 1.30299 1.17774 1.14123 1.10312 1.21766 0.95317 0.85822 0.97142 0.94109 0.90822 0.98065 0.88012 0.90509 0.75180 0.84626 0.86068 0.87175 0.87816 0.86534 0.91266 0.81329 0.83647 0.85929 0.81370 0.96321 0.97163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.31 10.09 21.65 0.22 -54.09 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.91 10.27 84.03 0.86 -13.04 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.62 -31.96 3.39 -691.99 -2.35 -34.31 16 10 C 0.15 7.08 5.87 86.86 0.51 7.59 16 11 C -0.13 -4.43 6.64 31.99 0.21 -4.22 16 12 C 0.14 4.92 3.24 46.18 0.15 5.07 16 13 H 0.09 3.10 7.70 -2.39 -0.02 3.08 16 14 N -0.71 -19.23 5.12 -436.89 -2.23 -21.46 16 15 C 0.50 13.09 7.51 87.66 0.66 13.75 16 16 O -0.59 -20.47 13.69 -3.04 -0.04 -20.52 16 17 C -0.12 -1.73 5.15 29.85 0.15 -1.58 16 18 C -0.07 -0.93 1.67 -10.92 -0.02 -0.95 16 19 H 0.07 1.45 7.82 -2.39 -0.02 1.43 16 20 C -0.13 -0.70 4.93 30.32 0.15 -0.55 16 21 C -0.12 -0.74 5.73 30.47 0.17 -0.57 16 22 C -0.58 -4.13 6.35 72.00 0.46 -3.68 16 23 S 2.40 45.84 5.30 -56.49 -0.30 45.54 16 24 O -0.99 -26.30 18.10 -127.38 -2.31 -28.61 16 25 O -0.99 -29.54 17.95 -127.38 -2.29 -31.82 16 26 C -0.59 -9.38 5.39 72.00 0.39 -9.00 16 27 C 0.13 5.56 6.98 86.73 0.61 6.17 16 28 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.07 3.92 5.87 -2.39 -0.01 3.90 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.41 9.33 8.62 -92.71 -0.80 8.53 16 34 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 1.30 8.09 -2.38 -0.02 1.28 16 36 H 0.11 -0.07 8.09 -2.39 -0.02 -0.09 16 37 H 0.10 0.32 8.06 -2.39 -0.02 0.30 16 38 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.07 0.72 8.02 -2.39 -0.02 0.70 16 40 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 2.84 5.87 -2.39 -0.01 2.83 16 43 H 0.17 1.15 8.14 -2.39 -0.02 1.14 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.01 0.48 8.04 -2.39 -0.02 0.46 16 Total: -1.00 -87.36 365.36 -2.31 -89.67 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.19 Total: 12.04 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 4.77 Total: -3.85 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.37 Total: -109.86 kcal Atomic # 8 Polarization: -76.31 SS G_CDS: -4.63 Total: -80.95 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 45.84 SS G_CDS: -0.30 Total: 45.54 kcal Total: -87.36 -2.31 -89.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015957083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.525 kcal (2) G-P(sol) polarization free energy of solvation -87.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds