Wall clock time and date at job start Tue Mar 31 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 14 14 H 1.09000 * 109.52763 * 301.39488 * 13 12 11 15 15 C 1.52999 * 109.49814 * 181.31434 * 13 12 11 16 16 N 1.46503 * 109.47270 * 175.16027 * 15 13 12 17 17 C 1.34779 * 119.99979 * 180.02562 * 16 15 13 18 18 O 1.21278 * 120.00027 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99768 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.64034 * 300.69800 * 19 17 16 21 21 C 1.53877 * 109.64749 * 61.12688 * 19 17 16 22 22 C 1.54971 * 106.65764 * 167.15155 * 21 19 17 23 23 S 1.83288 * 102.48099 * 317.38130 * 22 21 19 24 24 O 1.42099 * 109.35400 * 269.90456 * 23 22 21 25 25 O 1.42102 * 109.35215 * 136.69406 * 23 22 21 26 26 C 1.54163 * 109.64337 * 180.26728 * 19 17 16 27 27 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 28 28 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 29 29 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 30 30 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 31 31 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 32 32 H 1.08999 * 109.45583 * 174.73857 * 11 10 9 33 33 H 1.08994 * 109.46262 * 178.48775 * 12 11 10 34 34 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 35 35 H 1.09001 * 109.47340 * 295.16361 * 15 13 12 36 36 H 1.09008 * 109.46963 * 55.16282 * 15 13 12 37 37 H 0.96996 * 119.99803 * 0.02562 * 16 15 13 38 38 H 1.08997 * 110.02396 * 286.32455 * 21 19 17 39 39 H 1.08996 * 110.02742 * 47.74010 * 21 19 17 40 40 H 1.09002 * 110.75582 * 199.17860 * 22 21 19 41 41 H 1.09005 * 110.90419 * 75.65566 * 22 21 19 42 42 H 1.08997 * 110.32063 * 331.14263 * 26 19 17 43 43 H 1.09006 * 110.31696 * 93.33908 * 26 19 17 44 44 H 1.09000 * 109.58078 * 353.36597 * 27 9 7 45 45 H 1.08998 * 109.58919 * 113.79487 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 6 2.1821 -4.5601 -1.1359 14 1 3.0883 -4.1726 -1.6015 15 6 2.4375 -5.9792 -0.6244 16 7 3.5966 -5.9742 0.2716 17 6 4.0103 -7.1218 0.8448 18 8 3.4227 -8.1584 0.6193 19 6 5.2023 -7.1164 1.7669 20 1 6.0781 -6.7503 1.2314 21 6 4.9175 -6.2074 2.9754 22 6 6.0208 -6.5023 4.0229 23 16 6.1438 -8.3302 3.9649 24 8 5.2432 -8.8930 4.9089 25 8 7.5129 -8.7106 3.9755 26 6 5.4678 -8.5461 2.2789 27 6 1.7838 -3.6581 0.0365 28 1 -0.4850 -0.8357 0.0846 29 1 -0.5659 -2.5744 -1.1452 30 1 0.3218 -1.2239 -1.8971 31 1 1.7332 -2.7951 -3.1517 32 1 0.0234 -3.1916 -3.4500 33 1 1.3194 -5.2446 -2.9876 34 1 0.1369 -4.9483 -1.6909 35 1 1.5608 -6.3334 -0.0823 36 1 2.6340 -6.6400 -1.4689 37 1 4.0663 -5.1450 0.4522 38 1 4.9619 -5.1609 2.6740 39 1 3.9359 -6.4353 3.3908 40 1 5.7130 -6.1666 5.0132 41 1 6.9653 -6.0416 3.7332 42 1 4.5384 -9.1144 2.3137 43 1 6.1955 -9.0476 1.6408 44 1 2.6246 -3.5585 0.7230 45 1 0.9320 -4.0931 0.5593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023473245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:04 Heat of formation + Delta-G solvation = -101.007701 kcal Electronic energy + Delta-G solvation = -26763.502835 eV Core-core repulsion = 22908.161898 eV Total energy + Delta-G solvation = -3855.340937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30309 -38.16742 -37.37864 -36.47300 -36.14583 -35.15719 -33.28953 -30.77266 -30.47917 -30.26865 -26.85549 -25.18496 -24.95666 -22.94551 -22.20031 -21.09050 -20.36146 -19.20097 -19.18339 -17.96530 -17.42218 -17.30110 -16.18659 -16.11296 -15.94677 -15.50879 -14.78150 -14.60322 -14.49138 -14.12546 -14.10089 -13.77606 -13.61627 -13.35266 -13.02041 -12.67732 -12.61363 -12.57085 -12.44553 -12.34490 -12.31022 -12.18460 -11.63739 -11.62139 -11.16380 -11.02917 -10.76491 -10.72459 -10.52325 -10.38407 -10.19600 -10.13096 -10.00094 -9.83829 -9.35267 -9.16665 -8.46041 -6.97421 -6.15423 -3.34878 -0.34337 2.10594 2.35039 2.98106 3.16687 3.41710 3.45415 3.63506 3.64991 3.80921 4.04957 4.15890 4.35871 4.43460 4.49314 4.70160 4.89690 5.03498 5.05138 5.12879 5.22519 5.26112 5.27775 5.39863 5.42147 5.45597 5.62526 5.74610 5.77229 6.00139 6.09850 6.12777 6.26718 6.37660 6.41442 6.55178 6.59324 6.70272 7.00941 7.12264 7.31843 7.89223 7.99005 8.48432 9.01871 9.74487 10.19982 11.12456 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002818 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.832661 B = 9935.029251 C =11292.240658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.022 4.022 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.354 4.354 8 H 0.054 0.946 9 N -0.598 5.598 10 C 0.149 3.851 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.126 3.874 16 N -0.719 5.719 17 C 0.522 3.478 18 O -0.536 6.536 19 C -0.105 4.105 20 H 0.120 0.880 21 C -0.118 4.118 22 C -0.585 4.585 23 S 2.390 3.610 24 O -0.933 6.933 25 O -0.939 6.939 26 C -0.579 4.579 27 C 0.156 3.844 28 H 0.269 0.731 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.405 0.595 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.051 0.949 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -12.963 2.106 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.224 4.224 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.483 4.483 8 H 0.072 0.928 9 N -0.322 5.322 10 C 0.023 3.977 11 C -0.176 4.176 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.002 3.998 16 N -0.370 5.370 17 C 0.306 3.694 18 O -0.413 6.413 19 C -0.127 4.127 20 H 0.138 0.862 21 C -0.157 4.157 22 C -0.714 4.714 23 S 2.573 3.427 24 O -0.930 6.930 25 O -0.936 6.936 26 C -0.708 4.708 27 C 0.029 3.971 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.161 0.839 44 H 0.070 0.930 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.732 -12.684 2.558 16.811 hybrid contribution 0.168 -0.705 -0.491 0.875 sum 10.900 -13.389 2.067 17.388 Atomic orbital electron populations 1.70782 1.06643 1.30426 1.47433 1.25874 0.96526 1.01536 0.98502 0.83538 0.74822 0.76099 0.76166 1.21043 1.22023 1.21975 1.19915 0.97014 0.88301 1.43065 0.92790 1.44100 1.46919 1.01297 1.39847 1.21059 0.90427 0.98886 0.87326 1.22126 1.00824 0.95519 0.99088 1.21337 0.97650 0.97594 0.97227 1.21957 0.99677 0.93277 0.98977 0.90739 1.21511 0.87584 0.97947 0.92758 1.46060 1.32684 1.10321 1.47976 1.20042 0.84772 0.83852 0.80760 1.90704 1.56864 1.31636 1.62109 1.21734 0.99894 0.93555 0.97560 0.86159 1.22247 0.98697 1.02583 0.92147 1.30616 1.07692 1.25075 1.08062 1.09081 0.75641 0.79502 0.78504 1.93640 1.65780 1.75465 1.58148 1.93619 1.32282 1.81209 1.86534 1.30525 1.15071 1.03140 1.22104 1.20895 0.97396 0.86516 0.92283 0.91956 0.96491 0.90392 0.92356 0.92933 0.93121 0.92430 0.91371 0.91733 0.76011 0.87229 0.88531 0.83905 0.84022 0.82797 0.83916 0.93014 0.96526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.35 12.45 55.49 0.69 -25.65 16 2 C -0.02 -0.59 4.69 -17.43 -0.08 -0.67 16 3 Si 1.06 23.99 29.98 -169.99 -5.10 18.89 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.35 -9.22 9.48 -15.06 -0.14 -9.36 16 8 H 0.05 1.39 7.94 -52.49 -0.42 0.97 16 9 N -0.60 -13.82 2.83 -172.05 -0.49 -14.31 16 10 C 0.15 3.28 4.72 -3.48 -0.02 3.26 16 11 C -0.14 -2.37 6.10 -26.38 -0.16 -2.53 16 12 C -0.10 -1.49 5.16 -26.69 -0.14 -1.63 16 13 C -0.12 -1.74 2.38 -90.50 -0.22 -1.96 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.13 1.59 5.07 -4.04 -0.02 1.57 16 16 N -0.72 -7.74 5.25 -60.29 -0.32 -8.06 16 17 C 0.52 5.72 7.14 -10.98 -0.08 5.65 16 18 O -0.54 -7.89 15.43 5.56 0.09 -7.80 16 19 C -0.10 -0.73 2.95 -90.70 -0.27 -1.00 16 20 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 21 C -0.12 -0.70 5.65 -25.23 -0.14 -0.84 16 22 C -0.58 -2.85 7.31 38.20 0.28 -2.57 16 23 S 2.39 18.08 6.10 -107.50 -0.66 17.43 16 24 O -0.93 -10.84 18.15 -57.71 -1.05 -11.89 16 25 O -0.94 -10.08 18.15 -57.71 -1.05 -11.13 16 26 C -0.58 -4.13 6.49 37.77 0.24 -3.88 16 27 C 0.16 2.87 5.60 -3.71 -0.02 2.85 16 28 H 0.27 7.84 6.71 -40.82 -0.27 7.57 16 29 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 30 H 0.08 1.95 6.38 -51.93 -0.33 1.62 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.40 3.69 7.62 -40.82 -0.31 3.38 16 38 H 0.11 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.15 1.33 6.98 -51.93 -0.36 0.96 16 43 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.90 7.13 -51.93 -0.37 0.53 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -36.71 366.94 -10.29 -47.00 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.19 Total: 1.12 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.76 Total: -11.12 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.11 Total: -48.02 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -2.01 Total: -30.82 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.10 Total: 18.89 kcal Atomic # 16 Polarization: 18.08 SS G_CDS: -0.66 Total: 17.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.71 -10.29 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023473245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.007 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds