Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 14 14 H 1.08995 * 109.52949 * 58.60193 * 13 12 11 15 15 C 1.52999 * 109.49679 * 178.68317 * 13 12 11 16 16 N 1.46493 * 109.47423 * 184.83717 * 15 13 12 17 17 C 1.34777 * 120.00423 * 180.02562 * 16 15 13 18 18 O 1.21284 * 119.99853 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99943 * 179.97438 * 17 16 15 20 20 H 1.08991 * 109.64302 * 300.69829 * 19 17 16 21 21 C 1.53886 * 109.64317 * 180.26820 * 19 17 16 22 22 C 1.55045 * 106.62294 * 192.96666 * 21 19 17 23 23 S 1.83289 * 102.56754 * 42.43493 * 22 21 19 24 24 O 1.42102 * 109.35286 * 90.18211 * 23 22 21 25 25 O 1.42097 * 109.35860 * 223.25242 * 23 22 21 26 26 C 1.54171 * 109.64520 * 61.13121 * 19 17 16 27 27 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 28 28 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 30 30 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 31 31 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 32 32 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 33 33 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 34 34 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 35 35 H 1.09006 * 109.47246 * 304.83349 * 15 13 12 36 36 H 1.09001 * 109.47162 * 64.83182 * 15 13 12 37 37 H 0.97006 * 119.99619 * 0.02562 * 16 15 13 38 38 H 1.08998 * 110.02846 * 312.25789 * 21 19 17 39 39 H 1.09003 * 110.02124 * 73.67994 * 21 19 17 40 40 H 1.09001 * 110.79186 * 160.70487 * 22 21 19 41 41 H 1.09001 * 110.79125 * 283.98059 * 22 21 19 42 42 H 1.09001 * 110.31454 * 266.65750 * 26 19 17 43 43 H 1.08999 * 110.32034 * 28.85948 * 26 19 17 44 44 H 1.09004 * 109.58525 * 246.16048 * 27 9 7 45 45 H 1.08995 * 109.58430 * 6.43945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 6 2.0734 -4.6099 0.9881 14 1 2.9052 -4.2396 1.5872 15 6 2.4123 -6.0009 0.4485 16 7 3.6791 -5.9450 -0.2850 17 6 4.1790 -7.0604 -0.8529 18 8 3.5801 -8.1107 -0.7562 19 6 5.4819 -7.0026 -1.6079 20 1 5.3968 -6.2942 -2.4318 21 6 5.8230 -8.3984 -2.1587 22 6 7.3016 -8.3433 -2.6220 23 16 8.1099 -7.4117 -1.2662 24 8 8.5661 -8.3228 -0.2756 25 8 9.0080 -6.4594 -1.8191 26 6 6.6123 -6.5593 -0.6578 27 6 1.8216 -3.6548 -0.1828 28 1 -0.4850 0.8400 0.0004 29 1 0.0986 -1.3293 1.6671 30 1 -0.6750 -2.6418 0.7418 31 1 -0.3892 -3.3692 3.0579 32 1 1.3399 -2.9480 3.0083 33 1 -0.0220 -5.0381 1.2488 34 1 0.9832 -5.3888 2.6752 35 1 2.5042 -6.7005 1.2793 36 1 1.6192 -6.3341 -0.2210 37 1 4.1583 -5.1050 -0.3620 38 1 5.7048 -9.1477 -1.3759 39 1 5.1757 -8.6348 -3.0032 40 1 7.7189 -9.3469 -2.7043 41 1 7.3908 -7.8100 -3.5684 42 1 6.7472 -5.4789 -0.7083 43 1 6.3901 -6.8666 0.3641 44 1 1.0518 -4.0695 -0.8336 45 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023473246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = -97.966044 kcal Electronic energy + Delta-G solvation = -26689.048852 eV Core-core repulsion = 22833.839811 eV Total energy + Delta-G solvation = -3855.209041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24945 -38.02479 -37.39860 -36.46597 -36.09994 -34.97261 -33.11431 -31.06835 -30.51973 -29.99938 -26.58307 -25.44490 -25.20967 -22.73215 -22.10709 -21.00991 -20.30498 -19.22661 -19.14552 -17.76903 -17.33492 -16.76983 -16.53027 -16.05920 -15.72232 -15.47858 -14.90358 -14.71471 -14.51820 -14.20146 -13.99441 -13.62370 -13.51382 -12.90284 -12.86092 -12.74186 -12.60279 -12.49247 -12.37665 -12.32008 -12.25764 -12.21073 -11.68054 -11.37909 -11.26666 -11.07336 -10.78819 -10.76184 -10.58985 -10.32429 -10.25091 -10.06052 -9.94755 -9.63497 -9.50940 -9.09498 -8.52942 -6.75475 -5.85959 -3.29131 -0.37779 2.06047 2.40766 2.95934 3.20561 3.32802 3.39554 3.39886 3.62252 3.92551 4.01662 4.17352 4.31628 4.41695 4.45028 4.72946 4.97109 5.00682 5.03972 5.20355 5.21318 5.34819 5.37534 5.41043 5.53465 5.56466 5.73850 5.84072 5.90305 6.13581 6.22821 6.28831 6.35635 6.50322 6.62218 6.68176 6.78338 6.86840 7.33091 7.38089 7.60265 7.71058 8.04001 8.37053 9.13387 9.76932 10.33328 11.22340 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002862 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.118788 B = 9781.880591 C =11082.267153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.073 0.927 15 C 0.125 3.875 16 N -0.718 5.718 17 C 0.523 3.477 18 O -0.539 6.539 19 C -0.105 4.105 20 H 0.122 0.878 21 C -0.102 4.102 22 C -0.587 4.587 23 S 2.395 3.605 24 O -0.934 6.934 25 O -0.935 6.935 26 C -0.595 4.595 27 C 0.154 3.846 28 H 0.255 0.745 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.018 0.982 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 -15.467 -2.613 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.002 3.998 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.416 6.416 19 C -0.127 4.127 20 H 0.140 0.860 21 C -0.141 4.141 22 C -0.717 4.717 23 S 2.578 3.422 24 O -0.931 6.931 25 O -0.932 6.932 26 C -0.724 4.724 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.240 0.760 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.036 0.964 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.089 -15.997 -2.238 19.593 hybrid contribution -0.266 1.391 -0.285 1.445 sum 10.824 -14.605 -2.523 18.353 Atomic orbital electron populations 1.70023 1.05307 1.25727 1.53403 1.25031 0.95261 0.98437 1.00710 0.86381 0.78950 0.83345 0.78143 1.21590 1.20999 1.20848 1.19105 0.92580 0.84877 1.42169 0.91790 1.44011 1.35836 1.01140 1.50349 1.20714 0.88552 0.98455 0.88003 1.22100 1.00163 0.95899 0.99923 1.21340 0.96641 0.97805 0.97978 1.21972 0.98926 0.93492 0.99551 0.90826 1.21523 0.84550 0.98194 0.95564 1.46072 1.24796 1.11452 1.54565 1.20029 0.85940 0.84033 0.79320 1.90723 1.60939 1.29721 1.60222 1.21758 0.92913 0.99927 0.98131 0.86028 1.22057 0.92719 0.95755 1.03553 1.30658 1.08010 1.15276 1.17757 1.08963 0.77734 0.77264 0.78265 1.93635 1.78921 1.63172 1.57394 1.93634 1.60024 1.61128 1.78462 1.30628 1.16827 1.14856 1.10065 1.20889 0.97425 0.86906 0.92058 0.93500 0.89531 0.96476 0.93103 0.92767 0.92443 0.93413 0.91787 0.91363 0.75990 0.88243 0.87692 0.84089 0.84166 0.83230 0.83837 0.96373 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.19 55.49 0.62 -24.79 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.72 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 9 N -0.59 -13.93 3.00 -172.58 -0.52 -14.44 16 10 C 0.17 3.85 5.28 -3.94 -0.02 3.82 16 11 C -0.14 -2.55 6.06 -26.83 -0.16 -2.71 16 12 C -0.10 -1.54 5.17 -26.68 -0.14 -1.67 16 13 C -0.12 -1.79 2.38 -90.50 -0.22 -2.01 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.13 1.62 5.07 -4.05 -0.02 1.60 16 16 N -0.72 -7.95 5.25 -60.30 -0.32 -8.26 16 17 C 0.52 5.72 7.00 -10.98 -0.08 5.64 16 18 O -0.54 -7.76 15.80 5.55 0.09 -7.67 16 19 C -0.10 -0.72 2.95 -90.70 -0.27 -0.99 16 20 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 21 C -0.10 -0.63 5.27 -25.19 -0.13 -0.76 16 22 C -0.59 -2.63 7.31 38.24 0.28 -2.35 16 23 S 2.40 16.92 6.10 -107.50 -0.66 16.26 16 24 O -0.93 -10.22 18.14 -57.73 -1.05 -11.27 16 25 O -0.94 -9.89 18.15 -57.73 -1.05 -10.94 16 26 C -0.59 -3.54 6.60 37.77 0.25 -3.29 16 27 C 0.15 2.90 5.60 -3.71 -0.02 2.88 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 3.89 7.65 -40.82 -0.31 3.58 16 38 H 0.10 0.70 7.72 -51.93 -0.40 0.30 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.15 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.14 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.88 7.14 -51.93 -0.37 0.51 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -36.15 368.33 -10.39 -46.54 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.27 Total: -0.20 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.76 Total: -6.67 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.21 Total: -47.50 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -2.01 Total: -29.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 16.92 SS G_CDS: -0.66 Total: 16.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.15 -10.39 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023473246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.429 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds