Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47006 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46697 * 119.99885 * 3 2 1 6 6 H 1.48500 * 109.46788 * 239.99992 * 3 2 1 7 7 C 1.38812 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00206 * 204.34032 * 7 2 1 9 9 N 1.36940 * 120.00058 * 24.34730 * 7 2 1 10 10 C 1.46932 * 120.62774 * 29.02082 * 9 7 2 11 11 C 1.53628 * 108.54022 * 126.37003 * 10 9 7 12 12 C 1.53048 * 109.23973 * 54.85643 * 11 10 9 13 13 C 1.53035 * 109.53840 * 298.51030 * 12 11 10 14 14 H 1.09002 * 109.49754 * 301.41720 * 13 12 11 15 15 C 1.52995 * 109.52422 * 181.33469 * 13 12 11 16 16 N 1.46500 * 109.47415 * 175.14386 * 15 13 12 17 17 C 1.34776 * 120.00329 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00121 * 180.02562 * 17 16 15 20 20 H 1.09000 * 110.01366 * 59.29961 * 19 17 16 21 21 C 1.53882 * 110.02741 * 297.92078 * 19 17 16 22 22 C 1.54195 * 108.69180 * 193.57675 * 21 19 17 23 23 S 1.82916 * 105.10883 * 27.83119 * 22 21 19 24 24 O 1.42101 * 109.35540 * 244.52008 * 23 22 21 25 25 O 1.42103 * 109.35416 * 111.31782 * 23 22 21 26 26 C 1.55044 * 110.02946 * 180.68216 * 19 17 16 27 27 C 1.46917 * 120.63298 * 209.30646 * 9 7 2 28 28 H 0.97001 * 120.00351 * 185.77597 * 1 2 3 29 29 H 1.08991 * 109.58669 * 246.20255 * 10 9 7 30 30 H 1.09000 * 109.58696 * 6.63152 * 10 9 7 31 31 H 1.08998 * 109.63344 * 294.86547 * 11 10 9 32 32 H 1.09000 * 109.43171 * 174.72276 * 11 10 9 33 33 H 1.09003 * 109.45671 * 178.49182 * 12 11 10 34 34 H 1.08997 * 109.44585 * 58.52568 * 12 11 10 35 35 H 1.09000 * 109.47180 * 295.14072 * 15 13 12 36 36 H 1.09002 * 109.47214 * 55.14474 * 15 13 12 37 37 H 0.97007 * 119.99973 * 0.02562 * 16 15 13 38 38 H 1.08999 * 109.64268 * 313.37996 * 21 19 17 39 39 H 1.09002 * 109.64753 * 73.67200 * 21 19 17 40 40 H 1.09000 * 110.27249 * 268.94081 * 22 21 19 41 41 H 1.09000 * 110.42444 * 146.80199 * 22 21 19 42 42 H 1.09009 * 110.78786 * 279.98920 * 26 19 17 43 43 H 1.09002 * 110.79420 * 43.45036 * 26 19 17 44 44 H 1.09004 * 109.58457 * 353.36684 * 27 9 7 45 45 H 1.08998 * 109.59110 * 113.65162 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3860 9 7 1.4168 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0487 -4.5840 -2.1641 13 6 2.1821 -4.5601 -1.1359 14 1 3.0879 -4.1722 -1.6019 15 6 2.4383 -5.9791 -0.6244 16 7 3.5977 -5.9735 0.2712 17 6 4.0114 -7.1206 0.8452 18 8 3.4243 -8.1575 0.6199 19 6 5.2037 -7.1146 1.7669 20 1 5.0213 -6.4464 2.6084 21 6 6.4602 -6.6658 1.0003 22 6 7.7025 -6.9927 1.8531 23 16 7.2146 -8.4292 2.8751 24 8 7.2159 -8.0542 4.2457 25 8 7.9395 -9.5759 2.4522 26 6 5.4853 -8.5503 2.2801 27 6 1.7837 -3.6581 0.0364 28 1 -0.4851 -0.8358 0.0845 29 1 -0.5660 -2.5743 -1.1452 30 1 0.3218 -1.2239 -1.8971 31 1 1.7332 -2.7951 -3.1517 32 1 0.0231 -3.1914 -3.4497 33 1 1.3195 -5.2446 -2.9877 34 1 0.1369 -4.9483 -1.6910 35 1 1.5619 -6.3335 -0.0819 36 1 2.6347 -6.6398 -1.4688 37 1 4.0671 -5.1440 0.4516 38 1 6.5187 -7.1965 0.0500 39 1 6.4132 -5.5925 0.8160 40 1 7.9578 -6.1451 2.4890 41 1 8.5457 -7.2525 1.2130 42 1 4.8120 -8.8078 3.0978 43 1 5.4050 -9.2739 1.4689 44 1 2.6245 -3.5585 0.7230 45 1 0.9327 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023473248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -101.069913 kcal Electronic energy + Delta-G solvation = -26656.281722 eV Core-core repulsion = 22800.938087 eV Total energy + Delta-G solvation = -3855.343635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27250 -38.16143 -37.41541 -36.50637 -36.17933 -35.14577 -33.28344 -30.79108 -30.50081 -30.26317 -26.85435 -25.17813 -24.99455 -22.96162 -22.21344 -21.08912 -20.36219 -19.26356 -19.19465 -17.95203 -17.44233 -17.29353 -16.24067 -16.05034 -15.87986 -15.47559 -14.90609 -14.73870 -14.48506 -14.11792 -14.04096 -13.82578 -13.61791 -13.34485 -13.07256 -12.74625 -12.62522 -12.55873 -12.46618 -12.38694 -12.27425 -12.18821 -11.62394 -11.59937 -11.22140 -11.02272 -10.78837 -10.75250 -10.52161 -10.38278 -10.19186 -10.12509 -9.99607 -9.83485 -9.34669 -9.16381 -8.45422 -6.96857 -6.14789 -3.34195 -0.38088 2.06980 2.35191 2.96985 3.13957 3.42640 3.45862 3.60006 3.64137 3.76661 4.04133 4.12740 4.33254 4.40048 4.49817 4.67375 4.89516 4.98540 5.06361 5.12488 5.19731 5.25291 5.28199 5.34034 5.41570 5.43193 5.62626 5.74459 5.77326 6.00329 6.09883 6.12880 6.26820 6.38097 6.41693 6.55759 6.59479 6.70806 7.01209 7.12584 7.32133 7.90096 7.99341 8.49117 9.02541 9.75198 10.20563 11.13090 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.002697 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.908368 B =10380.072711 C =11608.282316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.022 4.022 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.354 4.354 8 H 0.055 0.945 9 N -0.598 5.598 10 C 0.149 3.851 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.126 3.874 16 N -0.720 5.720 17 C 0.527 3.473 18 O -0.535 6.535 19 C -0.115 4.115 20 H 0.124 0.876 21 C -0.108 4.108 22 C -0.591 4.591 23 S 2.390 3.610 24 O -0.934 6.934 25 O -0.937 6.937 26 C -0.566 4.566 27 C 0.155 3.845 28 H 0.269 0.731 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.405 0.595 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.051 0.949 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.159 -13.807 0.052 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.225 4.225 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.483 4.483 8 H 0.072 0.928 9 N -0.322 5.322 10 C 0.023 3.977 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.093 0.907 15 C 0.002 3.998 16 N -0.371 5.371 17 C 0.310 3.690 18 O -0.412 6.412 19 C -0.138 4.138 20 H 0.142 0.858 21 C -0.147 4.147 22 C -0.720 4.720 23 S 2.573 3.427 24 O -0.931 6.931 25 O -0.934 6.934 26 C -0.696 4.696 27 C 0.029 3.971 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.070 0.930 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 12.079 -13.401 0.501 18.048 hybrid contribution -0.060 -0.774 -0.369 0.859 sum 12.019 -14.175 0.132 18.585 Atomic orbital electron populations 1.70781 1.06645 1.30416 1.47461 1.25878 0.96529 1.01549 0.98500 0.83534 0.74819 0.76077 0.76169 1.21052 1.21956 1.22025 1.19922 0.97031 0.88292 1.43047 0.92770 1.44101 1.46920 1.01297 1.39848 1.21060 0.90427 0.98890 0.87328 1.22126 1.00818 0.95517 0.99087 1.21337 0.97655 0.97594 0.97217 1.21949 0.99673 0.93271 0.98949 0.90725 1.21503 0.87581 0.97943 0.92737 1.46078 1.32673 1.10387 1.47967 1.19890 0.84660 0.83878 0.80534 1.90715 1.56991 1.31638 1.61863 1.22052 0.95538 0.96013 1.00175 0.85801 1.21905 0.88546 1.05276 0.98975 1.30509 1.06868 1.20358 1.14312 1.09068 0.79164 0.77709 0.76772 1.93641 1.86042 1.83736 1.29707 1.93626 1.69524 1.46691 1.83588 1.30595 1.22875 1.02859 1.13263 1.20894 0.97433 0.86527 0.92278 0.91967 0.96503 0.90388 0.92349 0.92934 0.93116 0.92441 0.91419 0.91703 0.76006 0.88981 0.87877 0.84021 0.83975 0.83826 0.83329 0.93021 0.96546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 12.45 55.49 0.69 -25.78 16 2 C -0.02 -0.60 4.69 -17.43 -0.08 -0.68 16 3 Si 1.06 24.10 29.98 -169.99 -5.10 19.01 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.35 -9.28 9.48 -15.06 -0.14 -9.43 16 8 H 0.05 1.41 7.94 -52.49 -0.42 0.99 16 9 N -0.60 -13.91 2.83 -172.05 -0.49 -14.40 16 10 C 0.15 3.29 4.72 -3.48 -0.02 3.27 16 11 C -0.14 -2.37 6.10 -26.38 -0.16 -2.53 16 12 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 13 C -0.12 -1.74 2.37 -90.50 -0.21 -1.95 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 15 C 0.13 1.59 5.07 -4.04 -0.02 1.57 16 16 N -0.72 -7.76 5.27 -60.30 -0.32 -8.08 16 17 C 0.53 5.76 7.14 -10.99 -0.08 5.68 16 18 O -0.54 -7.83 15.79 5.56 0.09 -7.74 16 19 C -0.12 -0.82 2.96 -90.23 -0.27 -1.09 16 20 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.11 -0.55 5.68 -25.65 -0.15 -0.69 16 22 C -0.59 -2.54 7.26 37.78 0.27 -2.26 16 23 S 2.39 17.04 6.11 -107.50 -0.66 16.38 16 24 O -0.93 -9.98 18.15 -57.71 -1.05 -11.03 16 25 O -0.94 -10.11 18.15 -57.71 -1.05 -11.16 16 26 C -0.57 -3.98 6.19 38.24 0.24 -3.75 16 27 C 0.16 2.90 5.60 -3.71 -0.02 2.88 16 28 H 0.27 7.87 6.71 -40.82 -0.27 7.60 16 29 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 30 H 0.08 1.96 6.38 -51.93 -0.33 1.63 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.73 7.68 -40.82 -0.31 3.42 16 38 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.14 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.15 1.09 7.64 -51.93 -0.40 0.70 16 44 H 0.05 0.92 7.13 -51.93 -0.37 0.55 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -36.85 367.75 -10.33 -47.18 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.22 Total: 0.68 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.78 Total: -10.60 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.11 Total: -48.25 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -2.01 Total: -29.93 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.10 Total: 19.01 kcal Atomic # 16 Polarization: 17.04 SS G_CDS: -0.66 Total: 16.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.85 -10.33 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023473248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.894 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds