Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48506 * 109.47210 * 89.99507 * 3 2 1 5 5 H 1.48502 * 109.46891 * 209.99747 * 3 2 1 6 6 H 1.48497 * 109.46872 * 329.99674 * 3 2 1 7 7 C 1.38808 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00418 * 162.64382 * 7 2 1 9 9 N 1.36940 * 119.99786 * 342.64662 * 7 2 1 10 10 C 1.46923 * 120.62812 * 152.04325 * 9 7 2 11 11 C 1.53631 * 108.54036 * 126.37121 * 10 9 7 12 12 C 1.53038 * 109.24213 * 54.85570 * 11 10 9 13 13 C 1.53041 * 109.53719 * 298.50741 * 12 11 10 14 14 H 1.09001 * 109.52423 * 301.40203 * 13 12 11 15 15 C 1.52998 * 109.49498 * 181.31543 * 13 12 11 16 16 N 1.46503 * 109.47033 * 175.16378 * 15 13 12 17 17 C 1.34778 * 120.00240 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99593 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00152 * 180.02562 * 17 16 15 20 20 H 1.09004 * 110.28544 * 39.29093 * 19 17 16 21 21 C 1.54168 * 110.31419 * 277.18119 * 19 17 16 22 22 C 1.54021 * 108.62756 * 213.26683 * 21 19 17 23 23 C 1.55051 * 106.69635 * 47.05232 * 22 21 19 24 24 S 1.82915 * 110.32006 * 161.41139 * 19 17 16 25 25 O 1.42102 * 109.34937 * 234.42158 * 24 19 17 26 26 O 1.42099 * 109.35457 * 7.49236 * 24 19 17 27 27 C 1.46928 * 120.62959 * 332.32286 * 9 7 2 28 28 H 0.97001 * 120.00091 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.59145 * 246.19919 * 10 9 7 30 30 H 1.08998 * 109.59312 * 6.63045 * 10 9 7 31 31 H 1.08994 * 109.63234 * 294.85668 * 11 10 9 32 32 H 1.09007 * 109.45605 * 174.74083 * 11 10 9 33 33 H 1.09010 * 109.45747 * 178.48858 * 12 11 10 34 34 H 1.08997 * 109.45239 * 58.52744 * 12 11 10 35 35 H 1.08994 * 109.47627 * 295.16894 * 15 13 12 36 36 H 1.09002 * 109.46774 * 55.17038 * 15 13 12 37 37 H 0.97005 * 119.99727 * 0.02562 * 16 15 13 38 38 H 1.08996 * 109.64902 * 333.03703 * 21 19 17 39 39 H 1.09003 * 109.64804 * 93.33804 * 21 19 17 40 40 H 1.08997 * 109.95348 * 287.75594 * 22 21 19 41 41 H 1.09005 * 110.02939 * 166.38278 * 22 21 19 42 42 H 1.08999 * 110.78496 * 199.34388 * 23 22 21 43 43 H 1.09002 * 110.95636 * 75.95401 * 23 22 21 44 44 H 1.08999 * 109.58917 * 353.37583 * 27 9 7 45 45 H 1.09003 * 109.58668 * 113.65751 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4475 2.6526 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 1.8157 -3.6540 -0.1835 11 6 2.0740 -4.6096 0.9914 12 6 0.8183 -4.6890 1.8625 13 6 0.5005 -3.3036 2.4298 14 1 1.3487 -2.9454 3.0131 15 6 -0.7360 -3.3904 3.3267 16 7 -0.9719 -2.0908 3.9604 17 6 -2.0141 -1.9294 4.7996 18 8 -2.7570 -2.8600 5.0297 19 6 -2.2571 -0.5924 5.4509 20 1 -2.0594 0.2137 4.7443 21 6 -1.3695 -0.4373 6.7019 22 6 -2.1337 0.3972 7.7469 23 6 -3.5647 -0.1941 7.8292 24 16 -3.9761 -0.4893 6.0676 25 8 -4.6007 0.6682 5.5295 26 8 -4.6015 -1.7582 5.9334 27 6 0.2277 -2.3339 1.2756 28 1 -0.4850 0.8400 -0.0004 29 1 1.0404 -4.0662 -0.8295 30 1 2.7345 -3.5170 -0.7537 31 1 2.9079 -4.2395 1.5879 32 1 2.3136 -5.6011 0.6071 33 1 0.9886 -5.3868 2.6824 34 1 -0.0207 -5.0356 1.2591 35 1 -1.6028 -3.6641 2.7252 36 1 -0.5745 -4.1457 4.0959 37 1 -0.3779 -1.3464 3.7760 38 1 -1.1420 -1.4204 7.1140 39 1 -0.4423 0.0688 6.4330 40 1 -2.1779 1.4393 7.4306 41 1 -1.6422 0.3215 8.7169 42 1 -4.2548 0.5237 8.2726 43 1 -3.5686 -1.1291 8.3893 44 1 0.0984 -1.3254 1.6684 45 1 -0.6749 -2.6380 0.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -91.020633 kcal Electronic energy + Delta-G solvation = -27402.020494 eV Core-core repulsion = 23547.112629 eV Total energy + Delta-G solvation = -3854.907866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.82940 -37.86862 -37.08274 -36.40626 -35.87148 -34.71362 -33.12376 -31.35713 -30.31251 -29.72697 -26.32953 -25.38825 -24.98038 -22.25643 -21.99576 -21.04491 -20.52221 -19.21001 -18.75949 -17.58005 -17.14541 -16.77663 -16.35166 -15.66725 -15.35877 -15.16010 -14.95478 -14.44586 -14.23389 -14.09478 -13.80151 -13.65714 -13.50651 -12.94128 -12.86455 -12.55337 -12.37200 -12.32905 -12.22691 -12.10656 -11.99767 -11.93855 -11.45417 -11.28954 -11.06892 -10.87351 -10.79769 -10.54050 -10.47737 -10.27610 -10.24708 -9.99668 -9.84901 -9.59277 -9.49034 -8.83107 -8.55436 -6.74515 -5.86446 -3.29217 -0.14602 2.37511 2.57273 3.10465 3.29308 3.38333 3.39681 3.50242 3.90821 4.12677 4.28430 4.36709 4.41754 4.52490 4.63987 4.91313 5.09848 5.14440 5.22192 5.26637 5.37824 5.48826 5.49629 5.51971 5.54924 5.56746 5.74923 5.90567 6.05035 6.23123 6.25558 6.34148 6.44789 6.59980 6.62633 6.76328 6.80083 6.96310 7.23413 7.53503 7.59932 7.72061 8.25142 8.36494 9.13392 9.76578 10.34093 11.21395 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.003770 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.750245 B = 7424.789329 C = 8753.373347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.127 4.127 14 H 0.070 0.930 15 C 0.128 3.872 16 N -0.708 5.708 17 C 0.531 3.469 18 O -0.509 6.509 19 C -0.601 4.601 20 H 0.162 0.838 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.593 4.593 24 S 2.408 3.592 25 O -0.933 6.933 26 O -0.892 6.892 27 C 0.177 3.823 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.407 0.593 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.087 0.913 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -1.461 16.300 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.148 4.148 14 H 0.088 0.912 15 C 0.004 3.996 16 N -0.359 5.359 17 C 0.313 3.687 18 O -0.384 6.384 19 C -0.710 4.710 20 H 0.180 0.820 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.723 4.723 24 S 2.587 3.413 25 O -0.930 6.930 26 O -0.889 6.889 27 C 0.051 3.949 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.243 0.757 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.106 0.894 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.169 -2.077 15.926 16.371 hybrid contribution 1.556 1.485 0.185 2.159 sum -1.614 -0.591 16.112 16.203 Atomic orbital electron populations 1.70040 1.05150 1.25549 1.53912 1.25034 0.95266 0.98333 1.00999 0.86321 0.79233 0.83772 0.77659 1.21512 1.20424 1.21719 1.19222 0.92777 0.84844 1.41365 0.91620 1.44056 1.35944 1.01601 1.49890 1.21030 0.97542 0.86911 0.92900 1.22060 0.97299 0.98969 0.98850 1.21335 0.98393 0.95616 0.98503 1.22145 0.95808 0.98395 0.98468 0.91183 1.21486 0.98973 0.83606 0.95488 1.45982 1.29343 1.15142 1.45461 1.19079 0.82101 0.87480 0.80058 1.90950 1.45027 1.40783 1.61689 1.30804 1.26419 1.05633 1.08176 0.82006 1.21919 0.99224 1.02812 0.90074 1.22229 0.91811 1.00265 1.01417 1.30706 1.06239 1.11107 1.24218 1.08906 0.77235 0.75678 0.79531 1.93631 1.71640 1.50841 1.76934 1.93708 1.71057 1.40069 1.84094 1.20824 0.88870 0.97729 0.87505 0.93555 0.96402 0.92877 0.92438 0.93066 0.93376 0.92397 0.91334 0.91992 0.75726 0.89321 0.88138 0.89178 0.88186 0.84495 0.84247 0.89446 0.96218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.19 55.49 0.62 -24.34 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.14 2.99 -172.05 -0.51 -14.66 16 10 C 0.14 2.89 6.54 -3.48 -0.02 2.86 16 11 C -0.13 -2.18 6.10 -26.38 -0.16 -2.34 16 12 C -0.10 -1.59 5.16 -26.69 -0.14 -1.72 16 13 C -0.13 -2.19 2.38 -90.50 -0.22 -2.40 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 2.03 5.07 -4.04 -0.02 2.01 16 16 N -0.71 -10.58 5.33 -60.30 -0.32 -10.90 16 17 C 0.53 7.95 6.92 -10.99 -0.08 7.87 16 18 O -0.51 -9.38 14.18 -18.28 -0.26 -9.64 16 19 C -0.60 -6.57 3.60 -27.27 -0.10 -6.67 16 20 H 0.16 1.55 8.14 -51.93 -0.42 1.12 16 21 C -0.10 -0.75 5.95 -25.59 -0.15 -0.90 16 22 C -0.12 -0.67 6.48 -25.11 -0.16 -0.83 16 23 C -0.59 -4.02 7.31 38.24 0.28 -3.74 16 24 S 2.41 28.39 5.92 -107.50 -0.64 27.75 16 25 O -0.93 -13.65 18.15 -57.73 -1.05 -14.70 16 26 O -0.89 -14.59 15.38 -67.08 -1.03 -15.63 16 27 C 0.18 3.89 4.39 -3.71 -0.02 3.88 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.41 5.76 7.70 -40.82 -0.31 5.44 16 38 H 0.09 0.65 7.85 -51.93 -0.41 0.24 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 2.08 5.24 -51.93 -0.27 1.81 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -35.69 365.48 -11.02 -46.71 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.30 Total: 3.02 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.01 Total: -8.79 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.21 Total: -49.90 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -2.34 Total: -39.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 28.39 SS G_CDS: -0.64 Total: 27.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.69 -11.02 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.314 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds