Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47330 * 89.99929 * 3 2 1 5 5 H 1.48502 * 109.47153 * 329.99630 * 3 2 1 6 6 H 1.48498 * 109.47339 * 210.00083 * 3 2 1 7 7 C 1.38816 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 323.92247 * 7 2 1 9 9 N 1.36934 * 120.00086 * 143.92668 * 7 2 1 10 10 C 1.46927 * 120.62925 * 331.96571 * 9 7 2 11 11 C 1.52763 * 109.00494 * 233.58487 * 10 9 7 12 12 C 1.53038 * 109.38503 * 305.58859 * 11 10 9 13 13 C 1.53050 * 109.53876 * 61.24240 * 12 11 10 14 14 H 1.09000 * 109.52192 * 58.59881 * 13 12 11 15 15 C 1.52996 * 109.49599 * 178.68491 * 13 12 11 16 16 N 1.46501 * 109.46673 * 184.83709 * 15 13 12 17 17 C 1.34774 * 119.99831 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00021 * 179.97438 * 17 16 15 20 20 H 1.08995 * 110.28646 * 327.11654 * 19 17 16 21 21 C 1.54166 * 110.31607 * 89.33938 * 19 17 16 22 22 C 1.53877 * 108.70673 * 146.81217 * 21 19 17 23 23 C 1.55049 * 106.62175 * 312.81749 * 22 21 19 24 24 S 1.82913 * 110.31989 * 204.99671 * 19 17 16 25 25 O 1.42101 * 109.35457 * 352.37638 * 24 19 17 26 26 O 1.42107 * 109.35302 * 125.57820 * 24 19 17 27 27 C 1.46927 * 120.62780 * 152.24755 * 9 7 2 28 28 H 0.96997 * 120.00263 * 174.92040 * 1 2 3 29 29 H 1.08997 * 109.58985 * 353.41545 * 10 9 7 30 30 H 1.08996 * 109.58660 * 113.84774 * 10 9 7 31 31 H 1.09000 * 109.56531 * 185.55435 * 11 10 9 32 32 H 1.09000 * 109.39010 * 65.51724 * 11 10 9 33 33 H 1.09000 * 109.46221 * 301.21967 * 12 11 10 34 34 H 1.09002 * 109.45043 * 181.25185 * 12 11 10 35 35 H 1.08996 * 109.47063 * 304.83142 * 15 13 12 36 36 H 1.08998 * 109.47426 * 64.83663 * 15 13 12 37 37 H 0.96999 * 120.00345 * 359.97438 * 16 15 13 38 38 H 1.09004 * 109.64538 * 266.66368 * 21 19 17 39 39 H 1.08998 * 109.64913 * 26.95750 * 21 19 17 40 40 H 1.08999 * 110.03257 * 193.52337 * 22 21 19 41 41 H 1.09007 * 110.06676 * 72.12725 * 22 21 19 42 42 H 1.09000 * 110.79021 * 284.16554 * 23 22 21 43 43 H 1.08999 * 110.95499 * 160.77267 * 23 22 21 44 44 H 1.09003 * 109.58122 * 246.15343 * 27 9 7 45 45 H 1.08996 * 109.58607 * 6.57834 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.6255 -2.0480 0.5499 9 7 3.1827 -1.3155 -0.6989 10 6 3.4279 -0.4896 -1.8890 11 6 3.8016 -1.3997 -3.0577 12 6 4.9814 -2.2867 -2.6537 13 6 4.5792 -3.1638 -1.4657 14 1 3.7178 -3.7736 -1.7383 15 6 5.7485 -4.0734 -1.0835 16 7 5.3261 -4.9921 -0.0233 17 6 6.1971 -5.8917 0.4753 18 8 7.3304 -5.9409 0.0462 19 6 5.7629 -6.8363 1.5663 20 1 5.0315 -6.3541 2.2148 21 6 5.1741 -8.1240 0.9563 22 6 5.5087 -9.3065 1.8823 23 6 7.0147 -9.1851 2.2302 24 16 7.2089 -7.3892 2.5406 25 8 8.4003 -6.9296 1.9172 26 8 6.9792 -7.1217 3.9172 27 6 4.2167 -2.2697 -0.2757 28 1 -0.4850 -0.8367 -0.0744 29 1 2.5263 0.0702 -2.1375 30 1 4.2471 0.2017 -1.6915 31 1 4.0812 -0.7923 -3.9185 32 1 2.9476 -2.0258 -3.3162 33 1 5.8275 -1.6598 -2.3722 34 1 5.2633 -2.9210 -3.4942 35 1 6.0638 -4.6458 -1.9559 36 1 6.5804 -3.4657 -0.7275 37 1 4.4199 -4.9526 0.3202 38 1 4.0924 -8.0248 0.8648 39 1 5.6090 -8.2952 -0.0284 40 1 5.3190 -10.2487 1.3681 41 1 4.9099 -9.2506 2.7915 42 1 7.6326 -9.5015 1.3898 43 1 7.2560 -9.7605 3.1240 44 1 5.1015 -1.7264 0.0560 45 1 3.8353 -2.8839 0.5400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -86.715605 kcal Electronic energy + Delta-G solvation = -27020.017767 eV Core-core repulsion = 23165.296581 eV Total energy + Delta-G solvation = -3854.721186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.08522 -38.16069 -37.26778 -36.58280 -36.06029 -35.02946 -33.16313 -31.41116 -30.82484 -30.22100 -26.56320 -25.38264 -24.97745 -22.25228 -21.91534 -21.40938 -20.76910 -19.48837 -18.96840 -17.80202 -17.41583 -17.20341 -16.56533 -15.89351 -15.56047 -15.39817 -15.09859 -14.60917 -14.51891 -14.13957 -14.07495 -13.80814 -13.66560 -13.30159 -13.05771 -12.74763 -12.61889 -12.50008 -12.29663 -12.22659 -12.13233 -12.10394 -11.83140 -11.61352 -11.36471 -11.04844 -10.73063 -10.65032 -10.52175 -10.44130 -10.22024 -9.90558 -9.81598 -9.63431 -9.26624 -9.11215 -8.31761 -7.04144 -6.41283 -3.30224 -0.32620 2.18381 2.34167 2.85079 3.32219 3.49430 3.56144 3.69801 3.73129 3.94720 4.11273 4.20252 4.32413 4.48161 4.62291 4.68302 4.79253 4.98439 5.06561 5.07831 5.18652 5.24274 5.25053 5.33378 5.40323 5.42238 5.59996 5.74913 5.76777 5.99525 6.08816 6.10849 6.27967 6.36077 6.39670 6.54383 6.56019 6.68884 6.80446 6.99746 7.30895 7.98877 7.99666 8.41077 8.97611 9.60400 10.19789 10.99201 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.002858 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.956855 B = 9795.822891 C =10271.446284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 1.015 2.985 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.365 4.365 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.141 3.859 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.119 4.119 14 H 0.075 0.925 15 C 0.125 3.875 16 N -0.713 5.713 17 C 0.530 3.470 18 O -0.505 6.505 19 C -0.601 4.601 20 H 0.160 0.840 21 C -0.101 4.101 22 C -0.119 4.119 23 C -0.591 4.591 24 S 2.407 3.593 25 O -0.894 6.894 26 O -0.932 6.932 27 C 0.151 3.849 28 H 0.267 0.733 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.022 0.978 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -19.335 -0.107 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.198 4.198 3 Si 0.844 3.156 4 H -0.226 1.226 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.492 4.492 8 H 0.080 0.920 9 N -0.322 5.322 10 C 0.015 3.985 11 C -0.177 4.177 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.094 0.906 15 C 0.001 3.999 16 N -0.365 5.365 17 C 0.313 3.687 18 O -0.380 6.380 19 C -0.710 4.710 20 H 0.178 0.822 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.721 4.721 24 S 2.585 3.415 25 O -0.891 6.891 26 O -0.929 6.929 27 C 0.024 3.976 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.040 0.960 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.136 -17.189 0.175 21.042 hybrid contribution -1.068 -2.013 -0.201 2.288 sum 11.068 -19.202 -0.026 22.164 Atomic orbital electron populations 1.70897 1.07038 1.29772 1.45699 1.26111 0.95862 1.00838 0.97038 0.84660 0.76661 0.77311 0.76982 1.22554 1.22049 1.19452 1.19995 0.98149 0.98017 1.33071 0.91984 1.44293 1.16639 1.44205 1.27068 1.21307 0.98999 0.92386 0.85799 1.21995 0.97670 0.99064 0.98944 1.21337 0.98453 0.97685 0.96338 1.21952 0.96530 0.96808 0.98634 0.90647 1.21547 0.97958 0.90911 0.89471 1.46014 1.15345 1.35537 1.39649 1.19103 0.85729 0.81003 0.82898 1.90945 1.17862 1.69889 1.59298 1.30801 1.23416 1.05398 1.11412 0.82247 1.21891 1.03815 0.88128 1.00127 1.22210 0.91875 1.00380 1.01276 1.30692 1.04870 1.24522 1.11990 1.08939 0.77079 0.79717 0.75731 1.93710 1.40611 1.78014 1.76757 1.93640 1.86029 1.83664 1.29596 1.20971 0.91936 0.91455 0.93223 0.92349 0.91707 0.95262 0.92681 0.92179 0.92235 0.92934 0.91518 0.91119 0.75944 0.88170 0.89214 0.88062 0.89126 0.84145 0.84362 0.96046 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.70 55.49 0.76 -26.08 16 2 C 0.01 0.17 4.82 -17.43 -0.08 0.08 16 3 Si 1.01 24.84 27.01 -169.99 -4.59 20.25 16 4 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.04 4.73 56.52 0.27 -5.78 16 7 C -0.36 -9.81 9.70 -15.06 -0.15 -9.96 16 8 H 0.06 1.77 8.06 -52.49 -0.42 1.35 16 9 N -0.60 -13.67 2.72 -172.58 -0.47 -14.14 16 10 C 0.14 2.96 4.34 -3.93 -0.02 2.94 16 11 C -0.14 -2.32 6.06 -26.83 -0.16 -2.48 16 12 C -0.10 -1.47 5.17 -26.69 -0.14 -1.60 16 13 C -0.12 -1.78 2.38 -90.50 -0.22 -1.99 16 14 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.12 1.65 5.07 -4.04 -0.02 1.63 16 16 N -0.71 -8.56 5.33 -60.30 -0.32 -8.88 16 17 C 0.53 6.60 6.85 -10.98 -0.08 6.53 16 18 O -0.51 -8.17 14.39 -17.92 -0.26 -8.43 16 19 C -0.60 -5.12 3.61 -27.27 -0.10 -5.21 16 20 H 0.16 1.03 8.14 -51.93 -0.42 0.60 16 21 C -0.10 -0.56 5.93 -25.66 -0.15 -0.71 16 22 C -0.12 -0.48 6.48 -25.19 -0.16 -0.64 16 23 C -0.59 -3.12 7.31 38.24 0.28 -2.84 16 24 S 2.41 23.69 5.91 -107.50 -0.64 23.05 16 25 O -0.89 -13.00 15.52 -66.94 -1.04 -14.04 16 26 O -0.93 -11.76 18.15 -57.71 -1.05 -12.81 16 27 C 0.15 2.81 5.60 -3.71 -0.02 2.79 16 28 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 29 H 0.06 1.49 5.83 -51.93 -0.30 1.18 16 30 H 0.03 0.62 6.60 -51.93 -0.34 0.27 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 4.26 7.70 -40.82 -0.31 3.95 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.99 7.13 -51.93 -0.37 0.62 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -37.16 360.84 -10.54 -47.70 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.37 Total: -0.58 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.01 Total: -11.48 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.03 Total: -49.10 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -2.34 Total: -35.27 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.59 Total: 20.25 kcal Atomic # 16 Polarization: 23.69 SS G_CDS: -0.64 Total: 23.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.16 -10.54 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.018 kcal (2) G-P(sol) polarization free energy of solvation -37.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds