Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99687 * 2 1 4 4 H 1.48501 * 109.46719 * 272.94927 * 3 2 1 5 5 H 1.48495 * 109.46996 * 32.95019 * 3 2 1 6 6 H 1.48499 * 109.47121 * 152.95070 * 3 2 1 7 7 C 1.38809 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99384 * 339.33318 * 7 2 1 9 9 N 1.36933 * 120.00402 * 159.33295 * 7 2 1 10 10 C 1.46919 * 120.63319 * 152.56992 * 9 7 2 11 11 C 1.53197 * 108.77687 * 126.41428 * 10 9 7 12 12 C 1.53038 * 109.31143 * 54.63600 * 11 10 9 13 13 C 1.53042 * 109.53606 * 298.63509 * 12 11 10 14 14 H 1.09000 * 109.52507 * 301.39757 * 13 12 11 15 15 C 1.52997 * 109.49596 * 181.32036 * 13 12 11 16 16 N 1.46497 * 109.47157 * 175.16008 * 15 13 12 17 17 C 1.34785 * 119.99897 * 179.97438 * 16 15 13 18 18 O 1.21277 * 120.00311 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99687 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.28677 * 27.88951 * 19 17 16 21 21 C 1.54170 * 110.31697 * 150.00158 * 19 17 16 22 22 C 1.53874 * 108.70126 * 146.81184 * 21 19 17 23 23 C 1.55045 * 106.62855 * 312.81677 * 22 21 19 24 24 S 1.83292 * 102.73649 * 42.34163 * 23 22 21 25 25 O 1.42098 * 109.35384 * 90.28242 * 24 23 22 26 26 O 1.42105 * 109.35115 * 223.48560 * 24 23 22 27 27 C 1.46930 * 120.62974 * 332.59223 * 9 7 2 28 28 H 0.96999 * 120.00308 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58891 * 246.20477 * 10 9 7 30 30 H 1.09002 * 109.58943 * 6.48485 * 10 9 7 31 31 H 1.09000 * 109.49230 * 174.58843 * 11 10 9 32 32 H 1.08999 * 109.49359 * 294.68206 * 11 10 9 33 33 H 1.09000 * 109.45730 * 178.61675 * 12 11 10 34 34 H 1.09001 * 109.46316 * 58.65699 * 12 11 10 35 35 H 1.09004 * 109.47178 * 55.15878 * 15 13 12 36 36 H 1.09005 * 109.47142 * 295.16075 * 15 13 12 37 37 H 0.96997 * 120.00045 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.64489 * 26.96164 * 21 19 17 39 39 H 1.09002 * 109.53742 * 266.59851 * 21 19 17 40 40 H 1.09005 * 110.02717 * 193.53039 * 22 21 19 41 41 H 1.08997 * 110.06990 * 72.13602 * 22 21 19 42 42 H 1.08993 * 110.79414 * 160.70665 * 23 22 21 43 43 H 1.08997 * 110.78911 * 283.97949 * 23 22 21 44 44 H 1.08995 * 109.58809 * 113.79538 * 27 9 7 45 45 H 1.09006 * 109.58285 * 353.37592 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4351 2.0825 -1.3983 5 1 1.4801 2.6339 0.7615 6 1 3.5775 1.4232 0.6367 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1071 0.3311 9 7 3.3135 -1.2404 -0.4180 10 6 4.2353 -2.2622 0.0966 11 6 4.8755 -2.9908 -1.0892 12 6 5.5288 -1.9664 -2.0198 13 6 4.4616 -1.0111 -2.5589 14 1 3.6990 -1.5797 -3.0910 15 6 5.1103 -0.0079 -3.5147 16 7 4.0731 0.8319 -4.1189 17 6 4.4131 1.7938 -4.9998 18 8 5.5777 1.9638 -5.2925 19 6 3.3462 2.6580 -5.6208 20 1 2.4906 2.7422 -4.9508 21 6 3.9110 4.0552 -5.9459 22 6 3.2203 4.5835 -7.2153 23 6 3.2541 3.4305 -8.2513 24 16 2.8312 1.9634 -7.2372 25 8 1.4224 1.7780 -7.2418 26 8 3.6902 0.8864 -7.5859 27 6 3.8168 -0.2600 -1.3898 28 1 -0.4850 0.8400 0.0004 29 1 5.0118 -1.7858 0.6952 30 1 3.6851 -2.9742 0.7118 31 1 5.6322 -3.6851 -0.7239 32 1 4.1090 -3.5412 -1.6347 33 1 6.0063 -2.4842 -2.8517 34 1 6.2779 -1.3995 -1.4671 35 1 5.6445 -0.5456 -4.2981 36 1 5.8101 0.6197 -2.9628 37 1 3.1417 0.6962 -3.8846 38 1 4.9855 3.9857 -6.1152 39 1 3.7141 4.7307 -5.1134 40 1 3.7600 5.4482 -7.6016 41 1 2.1886 4.8562 -6.9938 42 1 2.5096 3.5892 -9.0314 43 1 4.2494 3.3280 -8.6838 44 1 4.5591 0.3797 -0.9126 45 1 2.9899 0.3477 -1.7574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -88.220745 kcal Electronic energy + Delta-G solvation = -27622.947639 eV Core-core repulsion = 23768.161185 eV Total energy + Delta-G solvation = -3854.786453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.04567 -38.22306 -37.34606 -36.51830 -36.11333 -34.92567 -33.17136 -31.55140 -30.76098 -30.22533 -26.61099 -25.37122 -25.16912 -22.65001 -21.94210 -21.02324 -20.81077 -19.48308 -19.06244 -17.76374 -17.43265 -16.88051 -16.66684 -15.99679 -15.70593 -15.44637 -15.00766 -14.62443 -14.30689 -14.20412 -14.14062 -13.91357 -13.35520 -13.32835 -12.98571 -12.87613 -12.57777 -12.54647 -12.38805 -12.30102 -12.23902 -12.12059 -11.66990 -11.50334 -11.39035 -11.04262 -10.84984 -10.66419 -10.64147 -10.56705 -10.17948 -10.15244 -9.89193 -9.75234 -9.51872 -9.07197 -8.68112 -7.03325 -6.01334 -3.36902 -0.40650 2.06528 2.53835 2.88201 3.18448 3.26015 3.40634 3.43956 3.73149 3.94272 4.12701 4.27979 4.40699 4.44162 4.57336 4.76410 4.83912 5.05831 5.12335 5.14405 5.20088 5.26675 5.35794 5.39539 5.47603 5.57971 5.67433 5.74814 5.80159 5.98824 6.06632 6.09018 6.25408 6.29884 6.38620 6.52266 6.52594 6.65844 6.66598 6.93391 7.36782 7.90021 8.01755 8.27300 8.88060 9.65360 10.03971 11.14572 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.004079 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.567129 B = 6861.975718 C = 7723.584928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.879 3.121 4 H -0.290 1.290 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.259 4.259 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.122 4.122 14 H 0.083 0.917 15 C 0.124 3.876 16 N -0.717 5.717 17 C 0.542 3.458 18 O -0.523 6.523 19 C -0.595 4.595 20 H 0.163 0.837 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.584 4.584 24 S 2.394 3.606 25 O -0.921 6.921 26 O -0.918 6.918 27 C 0.132 3.868 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.407 0.593 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.026 0.974 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 7.570 -14.380 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.710 3.290 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.138 4.138 13 C -0.143 4.143 14 H 0.101 0.899 15 C 0.001 3.999 16 N -0.369 5.369 17 C 0.324 3.676 18 O -0.399 6.399 19 C -0.705 4.705 20 H 0.181 0.819 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.715 4.715 24 S 2.574 3.426 25 O -0.918 6.918 26 O -0.915 6.915 27 C 0.007 3.993 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.242 0.758 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.044 0.956 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.139 6.860 -14.740 18.651 hybrid contribution 0.102 1.763 0.449 1.822 sum 9.241 8.623 -14.291 19.079 Atomic orbital electron populations 1.69832 1.05630 1.26531 1.52864 1.25284 0.95204 0.97389 0.99703 0.87023 0.80139 0.84944 0.76914 1.21834 1.23088 1.19653 1.18961 0.84987 0.94835 1.39949 0.89548 1.44341 1.08746 1.33592 1.46200 1.20965 0.92367 0.91259 0.93368 1.21989 0.99508 0.97510 0.98365 1.21338 0.96881 0.96890 0.98732 1.22019 0.98666 0.96683 0.96928 0.89913 1.21575 0.89915 0.92403 0.96048 1.46080 1.12171 1.34867 1.43743 1.18913 0.88489 0.80269 0.79884 1.90685 1.18662 1.69241 1.61352 1.30717 1.08901 1.08003 1.22831 0.81948 1.21984 1.02883 0.90823 0.98573 1.22231 1.03390 0.98056 0.92031 1.30628 1.12839 1.16968 1.11050 1.09325 0.75951 0.78349 0.78999 1.93663 1.28079 1.85125 1.84975 1.93656 1.67845 1.49416 1.80541 1.21389 0.97008 0.91899 0.89054 0.92720 0.96008 0.91874 0.92501 0.91862 0.92584 0.92286 0.90905 0.91219 0.75762 0.87767 0.88449 0.87904 0.89192 0.84158 0.83983 0.95571 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.04 13.97 55.49 0.78 -26.27 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 21.66 24.35 -169.99 -4.14 17.52 16 4 H -0.29 -6.62 6.62 56.52 0.37 -6.25 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.70 6.64 56.52 0.38 -6.32 16 7 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 9 N -0.61 -13.93 2.77 -172.32 -0.48 -14.40 16 10 C 0.15 2.79 6.52 -3.71 -0.02 2.77 16 11 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 12 C -0.10 -1.48 5.17 -26.69 -0.14 -1.62 16 13 C -0.12 -2.04 2.38 -90.50 -0.21 -2.26 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.12 1.91 5.07 -4.04 -0.02 1.89 16 16 N -0.72 -11.13 5.33 -60.29 -0.32 -11.45 16 17 C 0.54 8.08 6.36 -10.98 -0.07 8.01 16 18 O -0.52 -8.84 15.72 5.56 0.09 -8.76 16 19 C -0.60 -6.58 3.62 -27.27 -0.10 -6.68 16 20 H 0.16 1.53 8.14 -51.93 -0.42 1.11 16 21 C -0.10 -0.85 5.90 -25.66 -0.15 -1.01 16 22 C -0.12 -0.67 6.48 -25.20 -0.16 -0.84 16 23 C -0.58 -3.81 7.29 38.24 0.28 -3.53 16 24 S 2.39 26.77 5.96 -107.50 -0.64 26.13 16 25 O -0.92 -12.83 18.15 -57.71 -1.05 -13.88 16 26 O -0.92 -13.71 17.30 -57.71 -1.00 -14.71 16 27 C 0.13 2.74 3.29 -3.71 -0.01 2.73 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.41 6.11 7.70 -40.82 -0.31 5.80 16 38 H 0.10 0.94 6.88 -51.93 -0.36 0.58 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.55 7.08 -51.93 -0.37 0.19 16 45 H 0.07 1.53 3.71 -51.93 -0.19 1.34 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -36.35 360.97 -9.51 -45.87 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.17 Total: 3.96 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.02 Total: -9.46 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.02 Total: -52.12 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.96 Total: -37.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Atomic # 16 Polarization: 26.77 SS G_CDS: -0.64 Total: 26.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.35 -9.51 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.353 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds