Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48498 * 109.46765 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47194 * 299.99783 * 3 2 1 6 6 H 1.48498 * 109.47286 * 60.00121 * 3 2 1 7 7 C 1.38816 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99945 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46835 * 205.00007 * 10 9 7 12 12 C 1.53003 * 109.46331 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47272 * 60.00742 * 12 11 10 14 14 N 1.46499 * 109.47493 * 59.99227 * 13 12 11 15 15 C 1.34777 * 119.99665 * 155.28120 * 14 13 12 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 13 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 13 18 18 C 1.52999 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.53036 * 113.15414 * 275.37361 * 18 17 15 20 20 S 1.81426 * 89.89138 * 211.85192 * 19 18 17 21 21 O 1.42100 * 112.75335 * 280.47287 * 20 19 18 22 22 O 1.42102 * 112.75469 * 136.72725 * 20 19 18 23 23 C 1.53042 * 113.15435 * 174.99623 * 18 17 15 24 24 C 1.52999 * 109.46645 * 299.99275 * 13 12 11 25 25 C 1.52996 * 109.46828 * 85.00085 * 10 9 7 26 26 H 0.96999 * 119.99511 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99942 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.46937 * 325.00228 * 10 9 7 29 29 H 1.08997 * 109.46930 * 60.00535 * 11 10 9 30 30 H 1.08991 * 109.47002 * 299.99714 * 11 10 9 31 31 H 1.08991 * 109.47365 * 299.99517 * 12 11 10 32 32 H 1.09009 * 109.46651 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47014 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99790 * 334.99833 * 14 13 12 35 35 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 36 36 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 37 37 H 1.09003 * 112.49544 * 45.21408 * 18 17 15 38 38 H 1.09003 * 113.14543 * 327.10868 * 19 18 17 39 39 H 1.08997 * 113.15215 * 96.59323 * 19 18 17 40 40 H 1.09006 * 113.14842 * 263.40594 * 23 18 17 41 41 H 1.09006 * 113.14575 * 32.88971 * 23 18 17 42 42 H 1.08999 * 109.47488 * 180.02562 * 24 13 12 43 43 H 1.09005 * 109.47368 * 300.00374 * 24 13 12 44 44 H 1.08997 * 109.47425 * 299.99870 * 25 10 9 45 45 H 1.08996 * 109.47216 * 59.99708 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1809 -4.7521 -0.6091 12 6 1.9463 -6.0770 -0.6096 13 6 2.3105 -6.4562 0.8272 14 7 1.0868 -6.5994 1.6197 15 6 1.0830 -7.3801 2.7183 16 8 2.0913 -7.9681 3.0479 17 6 -0.1741 -7.5225 3.5371 18 6 0.0902 -8.4574 4.7190 19 6 -0.0659 -9.9373 4.3623 20 16 -0.6350 -10.2806 6.0505 21 8 0.4334 -10.3707 6.9830 22 8 -1.7533 -11.1567 6.0861 23 6 -1.0980 -8.5666 5.6773 24 6 3.1877 -5.3608 1.4368 25 6 2.4220 -4.0356 1.4375 26 1 -0.4849 0.8401 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 2.9689 -3.5505 -0.5889 29 1 0.9218 -4.4823 -1.6328 30 1 0.2703 -4.8584 -0.0197 31 1 2.8566 -5.9704 -1.1993 32 1 1.3211 -6.8575 -1.0436 33 1 2.8554 -7.4002 0.8268 34 1 0.2804 -6.1290 1.3561 35 1 -0.4787 -6.5440 3.9084 36 1 -0.9673 -7.9383 2.9158 37 1 1.0297 -8.2346 5.2250 38 1 -0.8311 -10.1177 3.6072 39 1 0.8801 -10.4224 4.1222 40 1 -1.0163 -7.9035 6.5386 41 1 -2.0622 -8.4827 5.1757 42 1 3.4477 -5.6310 2.4603 43 1 4.0982 -5.2542 0.8471 44 1 3.0469 -3.2553 1.8719 45 1 1.5113 -4.1418 2.0270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026517614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -88.216795 kcal Electronic energy + Delta-G solvation = -26386.446978 eV Core-core repulsion = 22531.660696 eV Total energy + Delta-G solvation = -3854.786282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31448 -38.46247 -37.67562 -36.96895 -36.35207 -34.68280 -32.84765 -31.00804 -30.49562 -29.38813 -27.43374 -27.05379 -23.75336 -22.38489 -22.12486 -20.95076 -20.49768 -19.20830 -18.91654 -17.60236 -17.12556 -16.87699 -16.68824 -16.43023 -15.67296 -15.50930 -15.43894 -14.84866 -14.21178 -14.10391 -13.66068 -13.60672 -13.52132 -13.32423 -13.19528 -12.68887 -12.60366 -12.57278 -12.42057 -12.25159 -11.92891 -11.72191 -11.69762 -11.52284 -11.05828 -10.96930 -10.92228 -10.86373 -10.68647 -10.44733 -10.22360 -10.15277 -9.85586 -9.75706 -9.62121 -9.00017 -8.87027 -6.99646 -5.81480 -3.09698 -0.22096 1.62033 2.58917 3.09896 3.31277 3.39630 3.45949 3.47637 3.62223 3.81690 4.23483 4.49181 4.54380 4.68997 4.74260 4.84154 4.97943 5.00168 5.05638 5.07955 5.19890 5.25419 5.42929 5.45891 5.51834 5.64605 5.67735 5.69865 5.81959 5.87848 5.96339 6.03673 6.21296 6.30361 6.44813 6.46931 6.60225 6.70356 6.93093 7.07864 7.49858 7.67055 8.19132 8.37628 9.48835 10.06608 10.40874 11.41334 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002264 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.239800 B =12363.928437 C =12978.833840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.148 3.852 14 N -0.717 5.717 15 C 0.512 3.488 16 O -0.545 6.545 17 C -0.122 4.122 18 C -0.051 4.051 19 C -0.594 4.594 20 S 2.407 3.593 21 O -0.914 6.914 22 O -0.930 6.930 23 C -0.601 4.601 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.254 0.746 27 H 0.382 0.618 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -20.628 6.819 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.163 4.163 12 C -0.161 4.161 13 C 0.044 3.956 14 N -0.369 5.369 15 C 0.298 3.702 16 O -0.422 6.422 17 C -0.163 4.163 18 C -0.072 4.072 19 C -0.723 4.723 20 S 2.589 3.411 21 O -0.911 6.911 22 O -0.927 6.927 23 C -0.729 4.729 24 C -0.168 4.168 25 C -0.172 4.172 26 H 0.064 0.936 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.238 0.762 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.996 -21.766 7.893 23.239 hybrid contribution -0.220 2.221 -0.947 2.425 sum -2.216 -19.545 6.946 20.861 Atomic orbital electron populations 1.69666 1.05089 1.25504 1.58005 1.24734 0.95518 0.97677 1.03142 0.86143 0.78824 0.84217 0.77181 1.20576 1.21891 1.21912 1.19283 0.91009 0.84139 1.42271 0.91195 1.42428 1.05688 0.99840 1.88614 1.20231 0.94328 0.85843 0.92867 1.21810 0.98577 0.94286 1.01590 1.21798 1.01493 0.97807 0.94981 1.20970 0.85390 0.98991 0.90299 1.46167 1.14875 1.48484 1.27410 1.20508 0.90039 0.78595 0.81029 1.90686 1.34940 1.47069 1.69548 1.21518 0.96970 1.01892 0.95943 1.21201 0.97780 0.92583 0.95595 1.31022 1.13016 1.04190 1.24056 1.08459 0.76082 0.78039 0.78546 1.93728 1.53529 1.85827 1.58029 1.93640 1.50184 1.62255 1.86667 1.31072 1.07289 1.25942 1.08634 1.21936 0.98397 0.95660 1.00792 1.22216 0.99556 0.94847 1.00554 0.93610 0.78440 0.93570 0.91487 0.92665 0.90410 0.91864 0.90015 0.76233 0.87635 0.88185 0.85843 0.84031 0.85217 0.85444 0.83712 0.92306 0.91466 0.92184 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.17 5.12 -53.42 -0.27 -17.44 16 10 C 0.18 3.22 2.77 -67.93 -0.19 3.03 16 11 C -0.12 -1.76 5.22 -26.73 -0.14 -1.90 16 12 C -0.12 -1.38 5.61 -26.73 -0.15 -1.53 16 13 C 0.15 1.77 2.78 -67.93 -0.19 1.58 16 14 N -0.72 -7.74 4.23 -53.81 -0.23 -7.97 16 15 C 0.51 5.69 7.79 -10.99 -0.09 5.61 16 16 O -0.54 -7.86 15.44 5.55 0.09 -7.78 16 17 C -0.12 -0.89 5.48 -27.88 -0.15 -1.04 16 18 C -0.05 -0.35 2.80 -90.58 -0.25 -0.61 16 19 C -0.59 -3.43 7.48 37.18 0.28 -3.15 16 20 S 2.41 14.84 7.55 -107.50 -0.81 14.03 16 21 O -0.91 -9.17 18.18 -57.30 -1.04 -10.22 16 22 O -0.93 -8.67 18.18 -57.30 -1.04 -9.71 16 23 C -0.60 -2.72 7.49 37.18 0.28 -2.44 16 24 C -0.13 -1.79 5.60 -26.70 -0.15 -1.94 16 25 C -0.13 -2.20 5.35 -26.71 -0.14 -2.34 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.38 9.59 7.80 -40.82 -0.32 9.27 16 28 H 0.05 0.88 8.08 -51.93 -0.42 0.47 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.74 6.51 -51.93 -0.34 0.40 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 1.02 7.58 -51.93 -0.39 0.62 16 34 H 0.40 3.83 6.87 -40.82 -0.28 3.55 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.50 7.89 -51.93 -0.41 0.09 16 37 H 0.12 1.02 7.71 -51.93 -0.40 0.62 16 38 H 0.14 0.56 7.94 -51.93 -0.41 0.15 16 39 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.14 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.90 7.61 -51.93 -0.39 0.50 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -36.88 371.95 -10.28 -47.17 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.14 Total: 7.79 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.14 Total: -11.73 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.22 Total: -52.16 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -2.00 Total: -27.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 14.84 SS G_CDS: -0.81 Total: 14.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.88 -10.28 -47.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026517614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.052 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds