Wall clock time and date at job start Tue Mar 31 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00475 * 2 1 4 4 H 1.48499 * 109.46850 * 269.99857 * 3 2 1 5 5 H 1.48494 * 109.47143 * 29.99712 * 3 2 1 6 6 H 1.48496 * 109.47415 * 149.99837 * 3 2 1 7 7 C 1.38816 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99842 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.65041 * 345.83486 * 9 7 2 11 11 C 1.54914 * 104.83174 * 204.14735 * 10 9 7 12 12 C 1.55157 * 101.58030 * 322.98821 * 11 10 9 13 13 C 1.47025 * 125.64497 * 165.85688 * 9 7 2 14 14 H 1.08996 * 110.01327 * 59.42906 * 13 9 7 15 15 C 1.53008 * 109.88169 * 298.33722 * 13 9 7 16 16 N 1.46499 * 109.46677 * 176.73560 * 15 13 9 17 17 C 1.34779 * 119.99540 * 175.43369 * 16 15 13 18 18 O 1.21281 * 119.99897 * 0.28132 * 17 16 15 19 19 C 1.50700 * 119.99786 * 180.27454 * 17 16 15 20 20 H 1.08997 * 109.38228 * 60.21627 * 19 17 16 21 21 C 1.52589 * 109.38871 * 300.52630 * 19 17 16 22 22 C 1.52583 * 110.64336 * 169.85840 * 21 19 17 23 23 C 1.53032 * 109.98947 * 69.98616 * 22 21 19 24 24 S 1.81672 * 109.00065 * 296.35373 * 23 22 21 25 25 O 1.42100 * 108.66193 * 299.96805 * 24 23 22 26 26 O 1.42097 * 108.66369 * 168.62368 * 24 23 22 27 27 C 1.53041 * 109.38503 * 180.02562 * 19 17 16 28 28 H 0.97006 * 119.99671 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36762 * 85.31171 * 10 9 7 30 30 H 1.09001 * 110.46247 * 323.03347 * 10 9 7 31 31 H 1.09002 * 111.00267 * 204.92048 * 11 10 9 32 32 H 1.08997 * 111.00490 * 81.06823 * 11 10 9 33 33 H 1.08998 * 110.72047 * 277.13734 * 12 11 10 34 34 H 1.09001 * 110.71667 * 153.86270 * 12 11 10 35 35 H 1.08998 * 109.46479 * 56.73866 * 15 13 9 36 36 H 1.08998 * 109.46991 * 296.73748 * 15 13 9 37 37 H 0.96995 * 120.00223 * 355.71236 * 16 15 13 38 38 H 1.09001 * 109.24085 * 290.15922 * 21 19 17 39 39 H 1.09003 * 109.24013 * 49.55710 * 21 19 17 40 40 H 1.09001 * 109.38361 * 309.82716 * 22 21 19 41 41 H 1.09000 * 109.38449 * 190.14588 * 22 21 19 42 42 H 1.08998 * 109.55142 * 176.49447 * 23 22 21 43 43 H 1.09006 * 109.55115 * 56.20801 * 23 22 21 44 44 H 1.09003 * 109.55176 * 303.66580 * 27 19 17 45 45 H 1.08999 * 109.54689 * 63.94879 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 -0.1100 -2.5511 0.2954 11 6 -0.2527 -4.0174 0.7744 12 6 0.7654 -4.7452 -0.1429 13 6 1.9001 -3.7096 -0.2897 14 1 2.6994 -3.9328 0.4170 15 6 2.4468 -3.7359 -1.7185 16 7 3.0862 -5.0292 -1.9730 17 6 3.5608 -5.3161 -3.2014 18 8 3.4630 -4.5017 -4.0947 19 6 4.2130 -6.6489 -3.4647 20 1 3.4972 -7.4470 -3.2679 21 6 5.4183 -6.8138 -2.5437 22 6 5.9500 -8.2427 -2.6043 23 6 6.6039 -8.5005 -3.9637 24 16 5.3408 -8.3662 -5.2625 25 8 4.3302 -9.3343 -5.0159 26 8 5.9892 -8.3420 -6.5267 27 6 4.6596 -6.7157 -4.9270 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7025 -2.3867 -0.6046 30 1 -0.4183 -1.8632 1.0827 31 1 -1.2642 -4.3869 0.6056 32 1 0.0272 -4.1148 1.8233 33 1 0.3198 -4.9691 -1.1121 34 1 1.1323 -5.6543 0.3334 35 1 3.1791 -2.9379 -1.8420 36 1 1.6283 -3.5902 -2.4234 37 1 3.1644 -5.6805 -1.2585 38 1 6.2040 -6.1247 -2.8535 39 1 5.1224 -6.5837 -1.5202 40 1 5.1261 -8.9418 -2.4608 41 1 6.6874 -8.3881 -1.8148 42 1 7.0357 -9.5012 -3.9769 43 1 7.3863 -7.7618 -4.1381 44 1 3.8044 -6.5351 -5.5783 45 1 5.4246 -5.9610 -5.1095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028174336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:17 Heat of formation + Delta-G solvation = -92.654294 kcal Electronic energy + Delta-G solvation = -26883.948334 eV Core-core repulsion = 23028.969628 eV Total energy + Delta-G solvation = -3854.978706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.10425 -37.89825 -37.42906 -36.66012 -36.33458 -34.40065 -32.55518 -32.33332 -29.78211 -28.91119 -27.96226 -25.46144 -24.59455 -23.40272 -21.99144 -20.46118 -20.05841 -19.51974 -19.20278 -17.86111 -16.87874 -16.75909 -16.21700 -15.95289 -15.81986 -15.56671 -15.30595 -14.76783 -14.41946 -14.21169 -13.96730 -13.79361 -13.44196 -13.34964 -12.97608 -12.51342 -12.37336 -12.33452 -12.14896 -11.96655 -11.95060 -11.84338 -11.76017 -11.46232 -11.35873 -11.14089 -10.98797 -10.84394 -10.65219 -10.31045 -10.15701 -10.01305 -9.90170 -9.78234 -9.62876 -8.78321 -8.63798 -6.90229 -5.82017 -3.19014 -0.33827 2.28549 2.65806 3.22739 3.31924 3.36735 3.41900 3.42926 3.55623 3.98224 4.11238 4.22045 4.28574 4.42778 4.50294 4.72973 4.77478 5.03031 5.05177 5.18251 5.27261 5.33539 5.34355 5.40689 5.44837 5.56419 5.58622 5.64415 5.74873 5.97925 6.06519 6.17997 6.39443 6.47757 6.54002 6.62543 6.73159 6.98115 7.46334 7.55172 7.64658 7.73965 8.19726 8.33119 9.11701 9.72407 10.39271 11.29749 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002679 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.682780 B =10449.013986 C =11063.987836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.107 3.893 16 N -0.720 5.720 17 C 0.516 3.484 18 O -0.535 6.535 19 C -0.099 4.099 20 H 0.117 0.883 21 C -0.136 4.136 22 C -0.108 4.108 23 C -0.606 4.606 24 S 2.418 3.582 25 O -0.936 6.936 26 O -0.942 6.942 27 C -0.583 4.583 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.144 0.856 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -18.926 -2.727 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.412 6.412 19 C -0.121 4.121 20 H 0.135 0.865 21 C -0.174 4.174 22 C -0.146 4.146 23 C -0.735 4.735 24 S 2.600 3.400 25 O -0.933 6.933 26 O -0.939 6.939 27 C -0.712 4.712 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.230 0.770 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.446 -18.664 -4.014 21.762 hybrid contribution 0.749 1.262 0.716 1.633 sum 11.195 -17.403 -3.298 20.954 Atomic orbital electron populations 1.69938 1.05033 1.25378 1.55685 1.24917 0.95684 0.97902 1.01298 0.86145 0.78695 0.83336 0.77727 1.21376 1.21607 1.20581 1.18970 0.90365 0.82181 1.44910 0.90667 1.44484 1.06131 1.00845 1.79817 1.21465 0.84694 0.90269 0.98883 1.23007 0.97558 0.99574 0.98597 1.22618 0.97122 0.96956 0.99796 1.21128 0.94482 0.88139 0.91897 0.94521 1.22299 0.97249 0.82700 0.99508 1.46137 1.59900 1.19813 1.11236 1.20124 0.78882 0.88058 0.82976 1.90730 1.57033 1.49371 1.44063 1.21080 0.99242 0.99084 0.92698 0.86479 1.21773 0.97001 0.97437 1.01180 1.21274 1.01568 0.96950 0.94796 1.30267 1.17339 1.11611 1.14331 1.08037 0.77395 0.77891 0.76631 1.93593 1.56672 1.56982 1.86102 1.93605 1.75826 1.86665 1.37811 1.30155 1.14134 1.23144 1.03785 0.93542 0.95643 0.90850 0.92307 0.92283 0.91801 0.92358 0.91389 0.91551 0.77006 0.89760 0.88832 0.89336 0.88934 0.84717 0.84720 0.83831 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.17 10.56 55.49 0.59 -25.59 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -6.29 9.75 -15.06 -0.15 -6.43 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.59 -14.10 3.13 -162.57 -0.51 -14.61 16 10 C 0.17 3.98 5.42 -2.53 -0.01 3.96 16 11 C -0.15 -2.61 7.09 -24.58 -0.17 -2.78 16 12 C -0.13 -1.98 6.13 -24.90 -0.15 -2.13 16 13 C 0.15 2.81 3.21 -66.95 -0.21 2.60 16 14 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 15 C 0.11 1.93 5.08 -4.04 -0.02 1.91 16 16 N -0.72 -9.35 5.15 -60.29 -0.31 -9.67 16 17 C 0.52 6.89 7.15 -10.98 -0.08 6.81 16 18 O -0.54 -9.69 15.94 5.56 0.09 -9.60 16 19 C -0.10 -0.83 2.35 -91.96 -0.22 -1.05 16 20 H 0.12 0.79 8.01 -51.93 -0.42 0.37 16 21 C -0.14 -0.77 4.90 -27.16 -0.13 -0.90 16 22 C -0.11 -0.44 5.73 -26.93 -0.15 -0.60 16 23 C -0.61 -2.62 6.35 37.17 0.24 -2.38 16 24 S 2.42 18.74 5.31 -107.50 -0.57 18.17 16 25 O -0.94 -10.12 17.94 -57.81 -1.04 -11.16 16 26 O -0.94 -10.87 18.10 -57.81 -1.05 -11.92 16 27 C -0.58 -4.86 4.94 37.18 0.18 -4.68 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.40 7.90 -51.93 -0.41 0.99 16 36 H 0.07 1.36 8.06 -51.93 -0.42 0.95 16 37 H 0.40 3.77 7.63 -40.82 -0.31 3.46 16 38 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 39 H 0.09 0.45 7.23 -51.93 -0.38 0.08 16 40 H 0.09 0.33 8.01 -51.93 -0.42 -0.08 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.14 1.32 8.00 -51.93 -0.42 0.90 16 45 H 0.14 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -37.13 367.52 -10.56 -47.69 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.29 Total: 0.25 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.98 Total: -5.78 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.23 Total: -49.86 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.99 Total: -32.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 18.74 SS G_CDS: -0.57 Total: 18.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.13 -10.56 -47.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028174336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.965 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds