Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47313 * 269.99849 * 3 2 1 5 5 H 1.48500 * 109.47357 * 30.00463 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00141 * 3 2 1 7 7 C 1.38811 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65129 * 14.79765 * 9 7 2 11 11 C 1.54908 * 104.83568 * 155.83865 * 10 9 7 12 12 C 1.55154 * 101.57983 * 37.00980 * 11 10 9 13 13 C 1.47029 * 125.64937 * 194.75987 * 9 7 2 14 14 H 1.08999 * 109.87946 * 300.66383 * 13 9 7 15 15 C 1.52998 * 109.88125 * 61.67282 * 13 9 7 16 16 N 1.46503 * 109.46972 * 184.49685 * 15 13 9 17 17 C 1.34774 * 119.99600 * 185.11263 * 16 15 13 18 18 O 1.21279 * 120.00553 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99504 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.38753 * 60.20996 * 19 17 16 21 21 C 1.52596 * 109.38564 * 180.02562 * 19 17 16 22 22 C 1.52578 * 110.61249 * 190.05998 * 21 19 17 23 23 C 1.53050 * 109.97760 * 289.95390 * 22 21 19 24 24 S 1.81675 * 108.96896 * 63.70553 * 23 22 21 25 25 O 1.42097 * 108.66352 * 191.35532 * 24 23 22 26 26 O 1.42095 * 108.66315 * 60.01387 * 24 23 22 27 27 C 1.53034 * 109.30160 * 300.47079 * 19 17 16 28 28 H 0.96996 * 119.99956 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.36827 * 274.67968 * 10 9 7 30 30 H 1.09004 * 110.36615 * 36.99512 * 10 9 7 31 31 H 1.08998 * 111.00643 * 155.08319 * 11 10 9 32 32 H 1.09000 * 111.00165 * 278.90018 * 11 10 9 33 33 H 1.08998 * 110.71838 * 206.13324 * 12 11 10 34 34 H 1.09005 * 110.71891 * 82.86514 * 12 11 10 35 35 H 1.09008 * 109.47195 * 64.50156 * 15 13 9 36 36 H 1.08995 * 109.47321 * 304.49916 * 15 13 9 37 37 H 0.96994 * 119.99646 * 5.11616 * 16 15 13 38 38 H 1.09004 * 109.23849 * 310.33639 * 21 19 17 39 39 H 1.09002 * 109.24169 * 69.77552 * 21 19 17 40 40 H 1.09011 * 109.39036 * 50.14856 * 22 21 19 41 41 H 1.09001 * 109.38823 * 169.83508 * 22 21 19 42 42 H 1.09004 * 109.57926 * 303.84772 * 23 22 21 43 43 H 1.09001 * 109.63170 * 183.58762 * 23 22 21 44 44 H 1.08995 * 109.55085 * 296.10697 * 27 19 17 45 45 H 1.09005 * 109.54864 * 56.29581 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1070 -2.5532 -0.3059 11 6 -0.2450 -4.0224 -0.7772 12 6 0.7644 -4.7443 0.1541 13 6 1.8976 -3.7078 0.3054 14 1 2.7042 -3.9323 -0.3925 15 6 2.4307 -3.7251 1.7394 16 7 3.0936 -5.0056 1.9985 17 6 3.5519 -5.2892 3.2338 18 8 3.4153 -4.4847 4.1310 19 6 4.2343 -6.6062 3.5002 20 1 5.1180 -6.6903 2.8676 21 6 4.6522 -6.6728 4.9663 22 6 5.5588 -7.8751 5.2124 23 6 4.7521 -9.1706 5.0969 24 16 4.1351 -9.3324 3.3958 25 8 3.1789 -10.3828 3.3569 26 8 5.2461 -9.3681 2.5106 27 6 3.2694 -7.7499 3.1794 28 1 -0.4850 0.8400 0.0004 29 1 -0.7081 -2.3832 0.5873 30 1 -0.4060 -1.8700 -1.1010 31 1 -1.2580 -4.3909 -0.6159 32 1 0.0444 -4.1260 -1.8230 33 1 1.1358 -5.6564 -0.3130 34 1 0.3095 -4.9623 1.1205 35 1 1.6025 -3.5971 2.4366 36 1 3.1453 -2.9127 1.8713 37 1 3.2026 -5.6491 1.2811 38 1 5.1868 -5.7600 5.2292 39 1 3.7623 -6.7602 5.5898 40 1 6.3609 -7.8806 4.4743 41 1 5.9891 -7.8053 6.2115 42 1 3.9104 -9.1398 5.7888 43 1 5.3898 -10.0217 5.3360 44 1 2.4147 -7.7061 3.8544 45 1 2.9255 -7.6589 2.1491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028174337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = -92.753647 kcal Electronic energy + Delta-G solvation = -26998.913162 eV Core-core repulsion = 23143.930147 eV Total energy + Delta-G solvation = -3854.983015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.10135 -37.90662 -37.44934 -36.58971 -36.38067 -34.41791 -32.66503 -32.36510 -29.69648 -28.70775 -28.09863 -25.41210 -24.62324 -23.60764 -21.72933 -20.41602 -20.09677 -19.49303 -19.24619 -17.81749 -16.90286 -16.82599 -16.32584 -16.05372 -15.83611 -15.69380 -14.97263 -14.61910 -14.44210 -14.39799 -13.93060 -13.87488 -13.41816 -13.31475 -13.05515 -12.51367 -12.38283 -12.33676 -12.11831 -11.94372 -11.88281 -11.80941 -11.71184 -11.41886 -11.36242 -11.24463 -10.98458 -10.82177 -10.73571 -10.30896 -10.14737 -10.00448 -9.89143 -9.78130 -9.59496 -8.77372 -8.62138 -6.88933 -5.81245 -3.18305 -0.39443 2.20740 2.65395 3.23083 3.26199 3.37299 3.43005 3.44485 3.53340 4.05558 4.07972 4.21001 4.32105 4.42258 4.46482 4.72475 4.82206 4.94647 5.10747 5.17535 5.26691 5.29501 5.34492 5.43645 5.49731 5.56931 5.67725 5.75321 5.85115 5.99126 6.07063 6.18048 6.40186 6.47834 6.54803 6.63003 6.73829 6.98718 7.46706 7.56040 7.64812 7.74609 8.20598 8.32589 9.12721 9.73283 10.40402 11.30723 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002842 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.475866 B = 9849.256054 C =10765.316361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.720 5.720 17 C 0.518 3.482 18 O -0.536 6.536 19 C -0.097 4.097 20 H 0.117 0.883 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.604 4.604 24 S 2.422 3.578 25 O -0.941 6.941 26 O -0.933 6.933 27 C -0.602 4.602 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -19.243 8.258 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.042 3.958 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.371 5.371 17 C 0.302 3.698 18 O -0.413 6.413 19 C -0.120 4.120 20 H 0.135 0.865 21 C -0.162 4.162 22 C -0.148 4.148 23 C -0.734 4.734 24 S 2.603 3.397 25 O -0.938 6.938 26 O -0.930 6.930 27 C -0.731 4.731 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.878 -19.086 8.275 22.245 hybrid contribution 0.227 1.205 0.289 1.260 sum 8.105 -17.881 8.564 21.419 Atomic orbital electron populations 1.69937 1.05041 1.25387 1.55694 1.24925 0.95685 0.97913 1.01266 0.86139 0.78802 0.83340 0.77602 1.21486 1.21564 1.20509 1.18975 0.90387 0.82160 1.44887 0.90651 1.44485 1.06485 1.01015 1.79291 1.21458 0.84791 0.90164 0.98841 1.23007 0.97569 0.99603 0.98563 1.22619 0.97168 0.97000 0.99724 1.21144 0.94566 0.88171 0.91885 0.94443 1.22299 0.96910 0.83127 0.99414 1.46159 1.59326 1.20965 1.10641 1.20108 0.79065 0.87642 0.83024 1.90729 1.56875 1.49592 1.44062 1.21086 0.98391 0.92441 1.00033 0.86531 1.21567 1.01206 0.99774 0.93647 1.21311 0.97990 0.90055 1.05414 1.30255 1.11788 1.07096 1.24231 1.07991 0.76304 0.77000 0.78375 1.93611 1.62226 1.51473 1.86458 1.93602 1.51660 1.86224 1.61543 1.30361 1.12078 1.18226 1.12394 0.93555 0.95583 0.90963 0.92313 0.92254 0.92387 0.91837 0.91527 0.91287 0.77105 0.88357 0.89953 0.89531 0.89043 0.84716 0.84730 0.84041 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.29 10.58 55.49 0.59 -25.71 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.34 9.72 -15.06 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.27 3.13 -162.57 -0.51 -14.78 16 10 C 0.17 4.02 5.41 -2.53 -0.01 4.01 16 11 C -0.15 -2.65 7.09 -24.58 -0.17 -2.83 16 12 C -0.13 -2.03 6.20 -24.90 -0.15 -2.18 16 13 C 0.15 2.86 3.19 -66.95 -0.21 2.65 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 1.97 5.10 -4.04 -0.02 1.94 16 16 N -0.72 -9.75 5.22 -60.29 -0.31 -10.06 16 17 C 0.52 6.93 7.14 -10.99 -0.08 6.85 16 18 O -0.54 -9.47 15.78 5.56 0.09 -9.39 16 19 C -0.10 -0.82 2.36 -91.96 -0.22 -1.04 16 20 H 0.12 0.81 8.01 -51.93 -0.42 0.39 16 21 C -0.12 -0.91 4.38 -27.15 -0.12 -1.03 16 22 C -0.11 -0.55 5.73 -26.92 -0.15 -0.70 16 23 C -0.60 -2.66 6.35 37.18 0.24 -2.42 16 24 S 2.42 17.04 5.31 -107.50 -0.57 16.47 16 25 O -0.94 -10.07 18.10 -57.81 -1.05 -11.11 16 26 O -0.93 -9.48 17.94 -57.81 -1.04 -10.51 16 27 C -0.60 -3.99 5.54 37.18 0.21 -3.78 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 35 H 0.07 1.37 8.03 -51.92 -0.42 0.95 16 36 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 37 H 0.40 4.14 7.73 -40.82 -0.32 3.82 16 38 H 0.10 0.84 7.73 -51.93 -0.40 0.44 16 39 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.09 0.41 8.01 -51.92 -0.42 -0.01 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.14 0.79 7.42 -51.93 -0.39 0.40 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -36.75 367.54 -10.52 -47.27 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.29 Total: 0.62 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.94 Total: -5.13 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.24 Total: -50.55 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.00 Total: -31.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 17.04 SS G_CDS: -0.57 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.75 -10.52 -47.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028174337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.482 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds