Wall clock time and date at job start Tue Mar 31 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47105 * 269.99919 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99836 * 3 2 1 6 6 H 1.48501 * 109.47315 * 149.99624 * 3 2 1 7 7 C 1.38817 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.47755 * 125.82313 * 346.93777 * 9 7 2 11 11 C 1.54912 * 104.84219 * 204.25287 * 10 9 7 12 12 C 1.55160 * 101.57940 * 322.90724 * 11 10 9 13 13 C 1.47016 * 125.65168 * 166.94587 * 9 7 2 14 14 H 1.09003 * 109.88482 * 59.31544 * 13 9 7 15 15 C 1.53003 * 109.88071 * 298.31048 * 13 9 7 16 16 N 1.46498 * 109.47329 * 176.58168 * 15 13 9 17 17 C 1.34780 * 120.00266 * 174.91303 * 16 15 13 18 18 O 1.21282 * 119.99435 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00060 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.38665 * 60.21246 * 19 17 16 21 21 C 1.52586 * 109.38531 * 179.97438 * 19 17 16 22 22 C 1.52591 * 110.64706 * 190.14313 * 21 19 17 23 23 C 1.53028 * 109.98575 * 290.01710 * 22 21 19 24 24 S 1.81673 * 109.00037 * 63.64637 * 23 22 21 25 25 O 1.42102 * 108.66555 * 60.02835 * 24 23 22 26 26 O 1.42104 * 108.66428 * 191.37081 * 24 23 22 27 27 C 1.53036 * 109.38854 * 300.52949 * 19 17 16 28 28 H 0.97005 * 119.99930 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.43002 * 85.37961 * 10 9 7 30 30 H 1.08996 * 110.38446 * 323.10631 * 10 9 7 31 31 H 1.09001 * 111.00510 * 204.83479 * 11 10 9 32 32 H 1.08993 * 111.00286 * 80.97984 * 11 10 9 33 33 H 1.08997 * 110.71991 * 277.13584 * 12 11 10 34 34 H 1.09005 * 110.86690 * 153.93586 * 12 11 10 35 35 H 1.09005 * 109.47070 * 56.58692 * 15 13 9 36 36 H 1.08995 * 109.47384 * 296.58197 * 15 13 9 37 37 H 0.97001 * 119.99934 * 354.91391 * 16 15 13 38 38 H 1.09005 * 109.23870 * 69.84540 * 21 19 17 39 39 H 1.08994 * 109.24353 * 310.45002 * 21 19 17 40 40 H 1.09000 * 109.38346 * 169.85410 * 22 21 19 41 41 H 1.08997 * 109.37863 * 50.17334 * 22 21 19 42 42 H 1.08998 * 109.55176 * 303.79103 * 23 22 21 43 43 H 1.09003 * 109.62863 * 183.54525 * 23 22 21 44 44 H 1.08992 * 109.55012 * 56.33301 * 27 19 17 45 45 H 1.09010 * 109.54548 * 296.05042 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1176 -2.5533 0.2708 11 6 -0.2645 -4.0150 0.7624 12 6 0.7707 -4.7492 -0.1303 13 6 1.9050 -3.7121 -0.2688 14 1 2.6930 -3.9258 0.4534 15 6 2.4756 -3.7514 -1.6879 16 7 3.1223 -5.0455 -1.9185 17 6 3.6088 -5.3480 -3.1385 18 8 3.5114 -4.5485 -4.0453 19 6 4.2736 -6.6794 -3.3758 20 1 3.5627 -7.4802 -3.1719 21 6 4.7296 -6.7659 -4.8293 22 6 5.1780 -8.1843 -5.1691 23 6 6.4893 -8.5051 -4.4486 24 16 6.2022 -8.4721 -2.6550 25 8 5.2183 -9.4458 -2.3340 26 8 7.4589 -8.5062 -1.9925 27 6 5.4764 -6.8206 -2.4403 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6954 -2.3998 -0.6406 30 1 -0.4408 -1.8582 1.0457 31 1 -1.2720 -4.3890 0.5806 32 1 -0.0018 -4.1008 1.8167 33 1 0.3420 -4.9843 -1.1044 34 1 1.1327 -5.6537 0.3586 35 1 3.2079 -2.9529 -1.8073 36 1 1.6687 -3.6152 -2.4079 37 1 3.2005 -5.6848 -1.1931 38 1 5.5613 -6.0790 -4.9863 39 1 3.9038 -6.4840 -5.4823 40 1 5.3266 -8.2686 -6.2456 41 1 4.4102 -8.8913 -4.8549 42 1 7.2413 -7.7610 -4.7113 43 1 6.8369 -9.4950 -4.7441 44 1 5.1517 -6.6959 -1.4074 45 1 6.2195 -6.0614 -2.6846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028174338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:28 Heat of formation + Delta-G solvation = -92.404463 kcal Electronic energy + Delta-G solvation = -26955.506300 eV Core-core repulsion = 23100.538427 eV Total energy + Delta-G solvation = -3854.967873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.10321 -37.89560 -37.44385 -36.58775 -36.37776 -34.41593 -32.66845 -32.35840 -29.70330 -28.68516 -28.09806 -25.42058 -24.62191 -23.60636 -21.73286 -20.42771 -20.06344 -19.50611 -19.23883 -17.81577 -16.89212 -16.82133 -16.34300 -16.08605 -15.83426 -15.64834 -14.96581 -14.68033 -14.46464 -14.30645 -14.01161 -13.80820 -13.43439 -13.33862 -13.03526 -12.51362 -12.37865 -12.26875 -12.13510 -11.93799 -11.92957 -11.78431 -11.72491 -11.40516 -11.37207 -11.23882 -10.98432 -10.83655 -10.73741 -10.30241 -10.14682 -9.99270 -9.88646 -9.75849 -9.59068 -8.78021 -8.63738 -6.90124 -5.80522 -3.17291 -0.39345 2.20843 2.64959 3.22892 3.26242 3.37472 3.42832 3.43743 3.53418 4.05581 4.07997 4.21019 4.31943 4.42227 4.46435 4.72482 4.82103 4.94279 5.10927 5.17560 5.26690 5.29552 5.34789 5.44370 5.49949 5.57317 5.67296 5.75843 5.84871 5.99044 6.07357 6.19430 6.40771 6.48117 6.54666 6.63697 6.73670 6.98774 7.47816 7.54987 7.64274 7.74984 8.20269 8.32083 9.12335 9.73324 10.40297 11.31092 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.002805 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.558032 B = 9979.611561 C =10413.730307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.151 3.849 14 H 0.037 0.963 15 C 0.107 3.893 16 N -0.720 5.720 17 C 0.518 3.482 18 O -0.536 6.536 19 C -0.097 4.097 20 H 0.117 0.883 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.604 4.604 24 S 2.422 3.578 25 O -0.933 6.933 26 O -0.941 6.941 27 C -0.602 4.602 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 -18.834 -7.522 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.042 3.958 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.371 5.371 17 C 0.302 3.698 18 O -0.413 6.413 19 C -0.119 4.119 20 H 0.135 0.865 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.734 4.734 24 S 2.603 3.397 25 O -0.930 6.930 26 O -0.938 6.938 27 C -0.731 4.731 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.418 -18.615 -7.486 22.165 hybrid contribution 0.449 1.292 -0.266 1.393 sum 9.868 -17.323 -7.752 21.391 Atomic orbital electron populations 1.69930 1.05018 1.25338 1.55855 1.24894 0.95688 0.97865 1.01409 0.86141 0.78702 0.83336 0.77704 1.21404 1.21603 1.20581 1.18977 0.90372 0.82180 1.44751 0.90631 1.44562 1.05467 1.00584 1.80714 1.21543 0.84519 0.90434 0.98917 1.23000 0.97444 0.99496 0.98749 1.22617 0.97059 0.96954 0.99877 1.21131 0.94432 0.88136 0.92072 0.94537 1.22303 0.97099 0.82612 0.99751 1.46160 1.59306 1.20212 1.11413 1.20110 0.78781 0.87911 0.83034 1.90730 1.57537 1.50177 1.42816 1.21077 0.95986 0.99059 0.95805 0.86546 1.21566 1.04052 0.96398 0.94198 1.21304 0.93519 0.97356 1.02563 1.30252 1.07251 1.11456 1.24420 1.07991 0.75654 0.77569 0.78446 1.93601 1.61124 1.56027 1.82287 1.93613 1.41869 1.86302 1.71973 1.30361 1.09123 1.24776 1.08825 0.93563 0.95707 0.90607 0.92287 0.92256 0.91814 0.92328 0.91416 0.91455 0.77097 0.89953 0.88358 0.89037 0.89542 0.84712 0.84719 0.84188 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.54 55.49 0.58 -25.72 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.31 9.75 -15.06 -0.15 -6.46 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.30 3.14 -162.31 -0.51 -14.81 16 10 C 0.17 3.99 5.46 -2.35 -0.01 3.97 16 11 C -0.15 -2.65 7.09 -24.58 -0.17 -2.82 16 12 C -0.13 -2.04 6.14 -24.90 -0.15 -2.19 16 13 C 0.15 2.86 3.20 -66.96 -0.21 2.65 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 1.96 5.08 -4.04 -0.02 1.94 16 16 N -0.72 -9.73 5.21 -60.29 -0.31 -10.04 16 17 C 0.52 6.91 7.15 -10.99 -0.08 6.84 16 18 O -0.54 -9.45 15.78 5.56 0.09 -9.37 16 19 C -0.10 -0.82 2.35 -91.97 -0.22 -1.03 16 20 H 0.12 0.79 8.01 -51.93 -0.42 0.37 16 21 C -0.12 -0.91 4.38 -27.15 -0.12 -1.03 16 22 C -0.11 -0.54 5.73 -26.93 -0.15 -0.70 16 23 C -0.60 -2.68 6.35 37.17 0.24 -2.45 16 24 S 2.42 17.23 5.31 -107.50 -0.57 16.66 16 25 O -0.93 -9.46 17.93 -57.81 -1.04 -10.49 16 26 O -0.94 -10.22 18.10 -57.81 -1.05 -11.26 16 27 C -0.60 -4.09 5.55 37.18 0.21 -3.88 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.08 1.98 6.82 -51.93 -0.35 1.63 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.01 7.80 -51.93 -0.40 0.60 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 36 H 0.07 1.38 8.06 -51.93 -0.42 0.97 16 37 H 0.40 4.13 7.70 -40.82 -0.31 3.82 16 38 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.10 0.83 7.72 -51.93 -0.40 0.43 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.40 8.01 -51.93 -0.42 -0.02 16 42 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.14 0.82 7.43 -51.93 -0.39 0.44 16 45 H 0.14 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -36.76 367.48 -10.52 -47.28 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.29 Total: 0.70 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.94 Total: -5.29 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.24 Total: -50.57 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.00 Total: -31.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.57 Total: 16.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.76 -10.52 -47.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028174338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.120 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds