Wall clock time and date at job start Tue Mar 31 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47286 * 299.99921 * 3 2 1 6 6 H 1.48494 * 109.47313 * 60.00185 * 3 2 1 7 7 C 1.38806 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00252 * 0.27426 * 7 2 1 10 10 C 1.47426 * 125.64311 * 14.18441 * 9 7 2 11 11 C 1.55130 * 104.71591 * 155.82274 * 10 9 7 12 12 C 1.55154 * 101.49155 * 37.29173 * 11 10 9 13 13 C 1.47016 * 125.64957 * 194.49432 * 9 7 2 14 14 H 1.08998 * 109.88421 * 300.44095 * 13 9 7 15 15 C 1.52999 * 109.88400 * 61.60030 * 13 9 7 16 16 N 1.46497 * 109.47502 * 183.77995 * 15 13 9 17 17 C 1.34774 * 120.00317 * 185.66190 * 16 15 13 18 18 O 1.21279 * 119.99949 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00454 * 179.97438 * 17 16 15 20 20 H 1.09007 * 109.37954 * 60.20642 * 19 17 16 21 21 C 1.52589 * 109.38509 * 300.52405 * 19 17 16 22 22 C 1.52582 * 110.64346 * 169.85186 * 21 19 17 23 23 C 1.53040 * 109.98736 * 69.98731 * 22 21 19 24 24 S 1.81670 * 108.99478 * 296.35000 * 23 22 21 25 25 O 1.42097 * 108.66562 * 299.96846 * 24 23 22 26 26 O 1.42102 * 108.74462 * 168.66058 * 24 23 22 27 27 C 1.53029 * 109.38863 * 179.97438 * 19 17 16 28 28 H 0.97001 * 120.00237 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36379 * 274.74048 * 10 9 7 30 30 H 1.08991 * 110.37048 * 37.07499 * 10 9 7 31 31 H 1.09000 * 111.18870 * 279.18372 * 11 10 9 32 32 H 1.09008 * 110.90525 * 155.27504 * 11 10 9 33 33 H 1.08997 * 110.71946 * 205.96759 * 12 11 10 34 34 H 1.08998 * 110.87016 * 82.76231 * 12 11 10 35 35 H 1.09003 * 109.47582 * 303.78159 * 15 13 9 36 36 H 1.09002 * 109.46909 * 63.77610 * 15 13 9 37 37 H 0.97002 * 120.00095 * 5.65092 * 16 15 13 38 38 H 1.08999 * 109.23934 * 290.15343 * 21 19 17 39 39 H 1.09004 * 109.23877 * 49.55196 * 21 19 17 40 40 H 1.09004 * 109.38779 * 309.82342 * 22 21 19 41 41 H 1.09004 * 109.30010 * 190.08799 * 22 21 19 42 42 H 1.08999 * 109.54903 * 176.49970 * 23 22 21 43 43 H 1.09000 * 109.62427 * 56.25225 * 23 22 21 44 44 H 1.09005 * 109.55140 * 303.66062 * 27 19 17 45 45 H 1.08993 * 109.55072 * 63.85529 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0067 10 6 -0.1086 -2.5505 -0.3067 11 6 -0.2463 -4.0181 -0.7903 12 6 0.7641 -4.7449 0.1361 13 6 1.8977 -3.7092 0.2909 14 1 2.7015 -3.9318 -0.4109 15 6 2.4328 -3.7338 1.7240 16 7 3.0808 -5.0222 1.9815 17 6 3.5278 -5.3165 3.2184 18 8 3.3940 -4.5145 4.1183 19 6 4.1938 -6.6421 3.4834 20 1 5.0807 -6.7331 2.8563 21 6 3.2233 -7.7718 3.1515 22 6 3.9400 -9.1188 3.1676 23 6 4.3187 -9.4927 4.6025 24 16 5.5040 -8.2717 5.2385 25 8 6.6585 -8.2843 4.4102 26 8 5.6506 -8.4640 6.6388 27 6 4.6033 -6.7195 4.9559 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7048 -2.3870 0.5910 30 1 -0.4117 -1.8618 -1.0952 31 1 0.0422 -4.1168 -1.8368 32 1 -1.2593 -4.3872 -0.6294 33 1 1.1347 -5.6547 -0.3360 34 1 0.3127 -4.9697 1.1024 35 1 3.1574 -2.9301 1.8552 36 1 1.6073 -3.5962 2.4224 37 1 3.1880 -5.6636 1.2617 38 1 2.4201 -7.7834 3.8882 39 1 2.7996 -7.6021 2.1616 40 1 4.8427 -9.0556 2.5598 41 1 3.2801 -9.8829 2.7568 42 1 4.7740 -10.4830 4.6132 43 1 3.4260 -9.4947 5.2280 44 1 5.2469 -5.8744 5.2004 45 1 3.7129 -6.6936 5.5839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028174339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:32 Heat of formation + Delta-G solvation = -122.217600 kcal Electronic energy + Delta-G solvation = -26913.464357 eV Core-core repulsion = 23057.203690 eV Total energy + Delta-G solvation = -3856.260668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.17295 -39.36091 -38.22184 -37.33660 -37.06644 -35.79045 -34.40420 -32.93016 -31.42713 -30.42999 -28.57367 -26.82923 -26.14321 -24.54533 -22.56901 -21.99253 -21.33271 -20.90231 -19.81857 -18.97871 -18.38103 -17.58482 -17.25340 -16.92931 -16.71211 -16.57263 -16.44215 -15.91582 -15.75014 -15.58690 -15.12343 -14.66193 -14.41162 -14.20344 -13.95654 -13.85124 -13.66516 -13.37780 -13.23523 -13.09164 -12.99333 -12.96553 -12.85665 -12.69835 -12.39617 -12.35355 -11.99672 -11.90345 -11.86957 -11.78552 -11.69879 -11.47120 -11.37941 -11.22006 -10.74301 -10.69078 -10.06800 -8.86441 -7.90269 -5.27391 -0.93209 1.42197 1.44343 1.53291 1.60360 1.70692 2.18856 2.48354 2.73666 2.96039 3.29648 3.36558 3.59869 3.68317 3.79316 3.83929 3.94778 3.99665 4.00980 4.09837 4.28643 4.37063 4.45995 4.50476 4.57268 4.69153 4.74666 4.76299 4.89575 4.98872 5.02726 5.11023 5.15510 5.17458 5.24292 5.32787 5.38521 5.47358 5.59364 5.67427 5.78862 6.22494 6.59635 7.08175 7.28535 7.75888 8.40885 9.20552 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.002715 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.511380 B =10310.889762 C =11243.317875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.147 3.853 14 H 0.053 0.947 15 C 0.128 3.872 16 N -0.703 5.703 17 C 0.513 3.487 18 O -0.590 6.590 19 C -0.092 4.092 20 H 0.136 0.864 21 C -0.137 4.137 22 C -0.108 4.108 23 C -0.579 4.579 24 S 2.426 3.574 25 O -0.972 6.972 26 O -0.987 6.987 27 C -0.591 4.591 28 H 0.247 0.753 29 H -0.010 1.010 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.419 0.581 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.123 0.877 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -25.693 3.095 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.356 5.356 17 C 0.299 3.701 18 O -0.470 6.470 19 C -0.114 4.114 20 H 0.153 0.847 21 C -0.175 4.175 22 C -0.146 4.146 23 C -0.712 4.712 24 S 2.613 3.387 25 O -0.969 6.969 26 O -0.985 6.985 27 C -0.720 4.720 28 H 0.056 0.944 29 H 0.008 0.992 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.257 0.743 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.141 0.859 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.816 -25.000 4.093 25.992 hybrid contribution -0.389 2.016 -0.030 2.054 sum 5.427 -22.983 4.063 23.962 Atomic orbital electron populations 1.70142 1.06231 1.25263 1.57680 1.25656 0.96500 1.00943 1.02291 0.85147 0.78337 0.80012 0.76692 1.19200 1.21518 1.22341 1.19323 0.90718 0.83691 1.42961 0.90614 1.44778 1.06820 1.02129 1.79931 1.21325 0.84049 0.93744 0.96179 1.22903 0.99767 0.95114 0.99421 1.22603 0.94912 0.97377 0.99926 1.21379 0.96268 0.86654 0.91763 0.92887 1.21681 0.95321 0.84323 0.98594 1.45820 1.59446 1.19048 1.11293 1.21046 0.77895 0.89093 0.82068 1.90712 1.58376 1.52229 1.45728 1.21170 1.02097 0.93290 0.94816 0.84668 1.21891 0.97788 0.91536 1.06271 1.21390 1.03593 0.97269 0.92314 1.30084 1.16849 1.15839 1.08436 1.07649 0.77803 0.79146 0.74116 1.93538 1.46965 1.86356 1.70072 1.93544 1.86901 1.85282 1.32731 1.30212 1.15743 1.22199 1.03807 0.94357 0.99168 0.94737 0.91091 0.89958 0.87165 0.91470 0.95311 0.94497 0.74343 0.89047 0.87024 0.88649 0.85860 0.82304 0.82261 0.85887 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 10.56 21.65 0.23 -56.40 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.06 9.74 84.03 0.82 -12.24 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.61 -29.77 3.13 -667.85 -2.09 -31.86 16 10 C 0.17 8.10 5.42 86.93 0.47 8.58 16 11 C -0.13 -4.27 7.10 32.06 0.23 -4.04 16 12 C -0.11 -2.93 6.17 31.78 0.20 -2.73 16 13 C 0.15 5.19 3.20 45.34 0.15 5.34 16 14 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 15 C 0.13 4.61 5.09 86.38 0.44 5.05 16 16 N -0.70 -16.98 5.15 -463.07 -2.39 -19.37 16 17 C 0.51 13.24 7.15 87.66 0.63 13.86 16 18 O -0.59 -22.04 15.93 -3.02 -0.05 -22.09 16 19 C -0.09 -1.34 2.35 -11.67 -0.03 -1.37 16 20 H 0.14 1.50 8.01 -2.38 -0.02 1.48 16 21 C -0.14 -0.86 4.90 30.32 0.15 -0.71 16 22 C -0.11 -0.25 5.73 30.47 0.17 -0.07 16 23 C -0.58 -2.19 6.35 72.00 0.46 -1.74 16 24 S 2.43 34.44 5.30 -56.49 -0.30 34.14 16 25 O -0.97 -20.19 17.94 -127.38 -2.28 -22.47 16 26 O -0.99 -22.64 18.11 -127.38 -2.31 -24.95 16 27 C -0.59 -9.57 4.94 71.99 0.36 -9.21 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H -0.01 -0.52 8.07 -2.39 -0.02 -0.54 16 30 H 0.03 1.86 6.91 -2.39 -0.02 1.84 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.77 7.79 -2.39 -0.02 1.75 16 35 H 0.03 1.25 7.88 -2.39 -0.02 1.23 16 36 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.42 6.29 7.67 -92.71 -0.71 5.58 16 38 H 0.09 0.50 8.09 -2.39 -0.02 0.48 16 39 H 0.11 0.35 7.23 -2.38 -0.02 0.34 16 40 H 0.09 0.19 8.01 -2.39 -0.02 0.17 16 41 H 0.12 -0.24 8.14 -2.38 -0.02 -0.26 16 42 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.16 -0.02 8.14 -2.39 -0.02 -0.03 16 44 H 0.12 2.47 8.00 -2.39 -0.02 2.45 16 45 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -88.70 367.57 -2.38 -91.08 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.27 Total: 5.88 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.50 Total: -2.25 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.24 Total: -107.63 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -4.64 Total: -69.51 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 34.44 SS G_CDS: -0.30 Total: 34.14 kcal Total: -88.70 -2.38 -91.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028174339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal (2) G-P(sol) polarization free energy of solvation -88.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds