Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47431 * 89.99688 * 3 2 1 5 5 H 1.48506 * 109.46801 * 329.99365 * 3 2 1 6 6 H 1.48497 * 109.47123 * 210.00040 * 3 2 1 7 7 C 1.38813 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00414 * 155.33495 * 7 2 1 9 9 N 1.36934 * 119.99711 * 335.34043 * 7 2 1 10 10 C 1.47423 * 125.65192 * 334.88586 * 9 7 2 11 11 C 1.54913 * 104.83470 * 204.09269 * 10 9 7 12 12 C 1.55153 * 101.57959 * 322.98975 * 11 10 9 13 13 C 1.47022 * 125.64906 * 154.57904 * 9 7 2 14 14 H 1.08999 * 109.88654 * 59.55602 * 13 9 7 15 15 C 1.53003 * 109.88144 * 298.39120 * 13 9 7 16 16 N 1.46507 * 109.46971 * 59.75268 * 15 13 9 17 17 C 1.34773 * 119.99885 * 185.90833 * 16 15 13 18 18 O 1.21290 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00090 * 179.97438 * 17 16 15 20 20 C 1.52595 * 109.23693 * 300.55588 * 19 17 16 21 21 C 1.53049 * 109.97289 * 169.67673 * 20 19 17 22 22 S 1.81671 * 108.97254 * 63.70317 * 21 20 19 23 23 O 1.42090 * 108.66550 * 191.35121 * 22 21 20 24 24 O 1.42103 * 108.74871 * 60.04047 * 22 21 20 25 25 C 1.81669 * 101.30655 * 305.68345 * 22 21 20 26 26 C 1.52584 * 109.24354 * 179.43870 * 19 17 16 27 27 H 0.97001 * 120.00076 * 174.04598 * 1 2 3 28 28 H 1.09005 * 110.36302 * 322.92886 * 10 9 7 29 29 H 1.08995 * 110.37292 * 85.25263 * 10 9 7 30 30 H 1.09007 * 111.00276 * 81.06228 * 11 10 9 31 31 H 1.09004 * 111.00506 * 204.87325 * 11 10 9 32 32 H 1.09000 * 110.72154 * 153.86788 * 12 11 10 33 33 H 1.09003 * 110.71816 * 276.95579 * 12 11 10 34 34 H 1.08998 * 109.47249 * 179.74770 * 15 13 9 35 35 H 1.08998 * 109.47117 * 299.74957 * 15 13 9 36 36 H 0.96994 * 120.00062 * 5.89555 * 16 15 13 37 37 H 1.08993 * 109.24062 * 59.99123 * 19 17 16 38 38 H 1.09004 * 109.38275 * 289.86717 * 20 19 17 39 39 H 1.08992 * 109.38812 * 49.55341 * 20 19 17 40 40 H 1.08997 * 109.58501 * 303.84574 * 21 20 19 41 41 H 1.09001 * 109.62653 * 183.58679 * 21 20 19 42 42 H 1.09000 * 109.54928 * 294.44033 * 25 22 21 43 43 H 1.08991 * 109.55340 * 174.15222 * 25 22 21 44 44 H 1.08992 * 109.38654 * 310.44233 * 26 19 17 45 45 H 1.09007 * 109.38383 * 70.23283 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 1.4477 2.6526 -0.7002 6 1 3.5478 1.4400 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0163 -1.2451 -0.3897 9 7 1.4192 -2.3337 0.4958 10 6 0.3355 -2.3703 1.4947 11 6 0.4530 -3.7660 2.1565 12 6 0.8562 -4.6509 0.9475 13 6 1.7558 -3.7132 0.1149 14 1 2.8038 -3.9140 0.3374 15 6 1.4886 -3.9210 -1.3772 16 7 2.3064 -2.9864 -2.1545 17 6 2.1499 -2.9044 -3.4906 18 8 1.3324 -3.6046 -4.0496 19 6 2.9907 -1.9426 -4.2902 20 6 2.7452 -0.5228 -3.7880 21 6 3.7689 0.4339 -4.4039 22 16 3.5284 0.4770 -6.2041 23 8 4.6326 1.1488 -6.7944 24 8 2.2104 0.9319 -6.4781 25 6 3.6322 -1.2884 -6.6198 26 6 2.6238 -2.0613 -5.7665 27 1 -0.4850 -0.8355 -0.0871 28 1 0.4775 -1.5851 2.2373 29 1 -0.6335 -2.2619 1.0074 30 1 1.2298 -3.7716 2.9212 31 1 -0.5035 -4.0832 2.5719 32 1 1.4121 -5.5277 1.2798 33 1 -0.0235 -4.9475 0.3763 34 1 1.7445 -4.9439 -1.6532 35 1 0.4340 -3.7414 -1.5859 36 1 2.9603 -2.4266 -1.7075 37 1 4.0436 -2.1925 -4.1604 38 1 1.7401 -0.2082 -4.0693 39 1 2.8386 -0.5018 -2.7023 40 1 4.7766 0.0849 -4.1788 41 1 3.6289 1.4338 -3.9932 42 1 4.6387 -1.6529 -6.4145 43 1 3.4001 -1.4289 -7.6754 44 1 2.6327 -3.1114 -6.0582 45 1 1.6270 -1.6499 -5.9258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028176267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -95.571524 kcal Electronic energy + Delta-G solvation = -28123.734980 eV Core-core repulsion = 24268.629773 eV Total energy + Delta-G solvation = -3855.105207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83424 -38.03094 -37.12381 -36.18673 -36.04173 -34.06260 -32.97883 -31.87724 -29.75784 -29.12262 -28.01127 -25.11215 -23.79608 -23.53784 -21.70209 -20.57006 -19.84620 -19.48548 -18.89411 -17.81789 -17.02083 -16.56289 -16.38408 -15.77710 -15.75779 -15.32673 -14.80028 -14.36611 -14.12555 -13.93628 -13.89405 -13.60670 -13.21308 -13.13915 -13.08936 -12.48671 -12.26806 -12.16586 -12.10456 -12.02870 -11.85999 -11.85215 -11.50497 -11.28757 -11.08574 -10.84958 -10.71636 -10.68220 -10.57255 -10.34999 -10.23531 -10.10144 -10.03103 -9.65178 -9.37330 -8.61609 -8.39763 -7.06037 -6.20978 -3.39158 -0.03855 2.59493 2.98092 3.31074 3.38286 3.53071 3.54403 3.60312 3.95702 4.36749 4.40046 4.48457 4.60012 4.72261 4.84725 5.02138 5.11243 5.17289 5.19550 5.26490 5.28376 5.39065 5.50724 5.55280 5.62402 5.76123 5.88128 5.90420 5.92468 6.08439 6.10126 6.12293 6.25336 6.29454 6.35615 6.41646 6.82565 6.86887 6.98395 7.03984 7.59623 8.08583 8.30030 8.69595 8.86603 9.62573 10.24942 11.07303 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.004592 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.281462 B = 6096.694868 C = 7560.410332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.015 4.015 3 Si 1.053 2.947 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.337 4.337 8 H 0.057 0.943 9 N -0.592 5.592 10 C 0.142 3.858 11 C -0.136 4.136 12 C -0.122 4.122 13 C 0.143 3.857 14 H 0.040 0.960 15 C 0.116 3.884 16 N -0.695 5.695 17 C 0.517 3.483 18 O -0.557 6.557 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.597 4.597 22 S 2.410 3.590 23 O -0.950 6.950 24 O -0.933 6.933 25 C -0.601 4.601 26 C -0.091 4.091 27 H 0.273 0.727 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -5.602 -5.549 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.220 4.220 3 Si 0.883 3.117 4 H -0.219 1.219 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.465 4.465 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.016 3.984 11 C -0.174 4.174 12 C -0.161 4.161 13 C 0.036 3.964 14 H 0.057 0.943 15 C -0.010 4.010 16 N -0.347 5.347 17 C 0.302 3.698 18 O -0.437 6.437 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.726 4.726 22 S 2.593 3.407 23 O -0.947 6.947 24 O -0.930 6.930 25 C -0.730 4.730 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.115 0.885 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.515 -3.609 -6.443 10.537 hybrid contribution 0.715 -1.987 0.662 2.213 sum 8.230 -5.597 -5.782 11.510 Atomic orbital electron populations 1.70712 1.06634 1.30786 1.46094 1.25707 0.96520 1.00941 0.98802 0.83700 0.74579 0.76433 0.77035 1.21868 1.21212 1.21488 1.19413 0.96250 0.87232 1.43587 0.92579 1.44582 1.42813 0.99924 1.44457 1.21558 0.92122 0.93610 0.91090 1.22787 1.00297 0.97433 0.96931 1.22488 0.99393 0.97212 0.96999 1.21318 0.97004 0.87485 0.90621 0.94266 1.21929 0.95603 0.90760 0.92695 1.46073 1.40730 1.41760 1.06165 1.20098 0.83596 0.83169 0.82944 1.90653 1.36711 1.45447 1.70869 1.21457 1.01698 0.95877 0.95590 1.21394 0.98723 0.90183 1.04771 1.30200 1.08735 1.09594 1.24101 1.08256 0.75373 0.78246 0.78869 1.93573 1.54567 1.71422 1.75141 1.93606 1.37656 1.78569 1.83210 1.30230 1.08688 1.24044 1.10072 1.21085 0.98024 1.03054 0.90835 0.91480 0.93414 0.95447 0.91895 0.91968 0.91808 0.91574 0.93417 0.91970 0.75159 0.87885 0.88732 0.87119 0.84725 0.84175 0.84967 0.84675 0.88548 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 13.05 55.49 0.72 -24.40 16 2 C -0.01 -0.38 5.18 -17.43 -0.09 -0.47 16 3 Si 1.05 22.82 29.98 -169.99 -5.10 17.72 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.34 -7.91 8.16 -15.06 -0.12 -8.04 16 8 H 0.06 1.26 6.47 -52.49 -0.34 0.92 16 9 N -0.59 -12.93 2.94 -162.57 -0.48 -13.40 16 10 C 0.14 3.00 5.51 -2.53 -0.01 2.98 16 11 C -0.14 -2.22 7.09 -24.58 -0.17 -2.39 16 12 C -0.12 -1.89 6.48 -24.89 -0.16 -2.05 16 13 C 0.14 2.59 3.37 -66.95 -0.23 2.36 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.12 2.11 5.21 -4.04 -0.02 2.09 16 16 N -0.70 -12.21 4.61 -60.29 -0.28 -12.49 16 17 C 0.52 8.88 7.14 -10.99 -0.08 8.80 16 18 O -0.56 -11.27 15.77 5.55 0.09 -11.18 16 19 C -0.12 -1.60 2.28 -92.19 -0.21 -1.81 16 20 C -0.11 -1.56 5.00 -26.91 -0.13 -1.69 16 21 C -0.60 -6.43 6.35 37.18 0.24 -6.19 16 22 S 2.41 27.65 5.30 -107.50 -0.57 27.08 16 23 O -0.95 -13.31 18.10 -57.82 -1.05 -14.36 16 24 O -0.93 -14.47 17.95 -57.82 -1.04 -15.51 16 25 C -0.60 -5.29 6.35 37.18 0.24 -5.05 16 26 C -0.09 -1.07 4.46 -26.92 -0.12 -1.19 16 27 H 0.27 7.74 6.09 -40.82 -0.25 7.49 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.64 6.70 -51.93 -0.35 0.29 16 30 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.41 7.02 5.02 -40.82 -0.21 6.81 16 37 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.09 1.45 8.02 -51.93 -0.42 1.04 16 39 H 0.11 1.74 7.22 -51.93 -0.38 1.36 16 40 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.13 7.73 -51.93 -0.40 0.73 16 45 H 0.09 1.20 8.01 -51.93 -0.42 0.78 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -33.95 362.31 -10.14 -44.09 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.02 Total: 9.64 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.88 Total: -12.66 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.03 Total: -50.29 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -2.00 Total: -41.05 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.10 Total: 17.72 kcal Atomic # 16 Polarization: 27.65 SS G_CDS: -0.57 Total: 27.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.95 -10.14 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028176267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.481 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds