Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46917 * 300.00043 * 3 2 1 6 6 H 1.48503 * 109.47218 * 59.99543 * 3 2 1 7 7 C 1.38805 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99876 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64855 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.27087 * 178.91815 * 10 9 7 12 12 C 1.55158 * 102.94415 * 337.80686 * 11 10 9 13 13 H 1.09001 * 111.00417 * 277.39202 * 12 11 10 14 14 C 1.53000 * 111.00308 * 153.57272 * 12 11 10 15 15 N 1.46499 * 109.46840 * 174.99892 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.38375 * 299.79171 * 18 16 15 20 20 C 1.52586 * 109.38463 * 59.47367 * 18 16 15 21 21 C 1.52592 * 110.64231 * 190.14259 * 20 18 16 22 22 C 1.53032 * 109.98594 * 290.01492 * 21 20 18 23 23 S 1.81678 * 108.99830 * 63.64909 * 22 21 20 24 24 O 1.42097 * 108.66073 * 191.36859 * 23 22 21 25 25 O 1.42103 * 108.74659 * 60.06228 * 23 22 21 26 26 C 1.53038 * 109.38578 * 180.02562 * 18 16 15 27 27 C 1.47424 * 125.64997 * 179.97438 * 9 7 2 28 28 H 0.96998 * 119.99792 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88141 * 59.50574 * 10 9 7 30 30 H 1.08997 * 110.00867 * 298.40804 * 10 9 7 31 31 H 1.08998 * 110.72429 * 219.43970 * 11 10 9 32 32 H 1.09005 * 110.87254 * 96.24224 * 11 10 9 33 33 H 1.09002 * 109.47398 * 295.00218 * 14 12 11 34 34 H 1.09001 * 109.47194 * 55.00398 * 14 12 11 35 35 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 36 36 H 1.08997 * 109.24486 * 310.44846 * 20 18 16 37 37 H 1.08999 * 109.24302 * 69.84774 * 20 18 16 38 38 H 1.09001 * 109.38531 * 169.85859 * 21 20 18 39 39 H 1.08994 * 109.29945 * 50.12298 * 21 20 18 40 40 H 1.09001 * 109.55340 * 303.79436 * 22 21 20 41 41 H 1.09003 * 109.63090 * 183.55067 * 22 21 20 42 42 H 1.08997 * 109.54865 * 296.04778 * 26 18 16 43 43 H 1.09004 * 109.54878 * 56.23823 * 26 18 16 44 44 H 1.09005 * 110.36647 * 85.30898 * 27 9 7 45 45 H 1.08997 * 110.36735 * 322.99119 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8524 -4.6560 -0.6118 13 1 0.8579 -4.5964 -1.7002 14 6 1.0371 -6.1008 -0.1435 15 7 2.2065 -6.6832 -0.8064 16 6 2.5643 -7.9563 -0.5460 17 8 1.9183 -8.6195 0.2373 18 6 3.7676 -8.5553 -1.2275 19 1 3.6162 -8.5416 -2.3068 20 6 5.0064 -7.7342 -0.8817 21 6 6.1905 -8.1570 -1.7462 22 6 6.6628 -9.5546 -1.3391 23 16 5.3331 -10.7477 -1.6690 24 8 5.6681 -11.9837 -1.0531 25 8 5.0304 -10.7219 -3.0571 26 6 3.9497 -10.0007 -0.7588 27 6 1.9334 -3.7311 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5569 -2.0520 -0.8843 30 1 -0.5573 -2.0841 0.8998 31 1 -1.2980 -4.2514 -0.6785 32 1 -0.6340 -4.4207 0.9780 33 1 1.1861 -6.1166 0.9362 34 1 0.1497 -6.6810 -0.3964 35 1 2.7234 -6.1526 -1.4327 36 1 4.7964 -6.6783 -1.0515 37 1 5.2561 -7.8858 0.1684 38 1 7.0067 -7.4467 -1.6144 39 1 5.8865 -8.1685 -2.7928 40 1 6.9047 -9.5626 -0.2762 41 1 7.5470 -9.8250 -1.9164 42 1 4.1671 -10.0131 0.3092 43 1 3.0370 -10.5645 -0.9518 44 1 2.1660 -4.0422 1.0190 45 1 2.8332 -3.7402 -0.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = -93.182070 kcal Electronic energy + Delta-G solvation = -26519.116739 eV Core-core repulsion = 22664.115147 eV Total energy + Delta-G solvation = -3855.001593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.31585 -37.93936 -37.49913 -36.76284 -36.40033 -34.81824 -32.67784 -32.32658 -29.93121 -28.59307 -27.99002 -25.90654 -24.73483 -23.29023 -22.07796 -20.61521 -20.06729 -19.67927 -19.26904 -17.93244 -16.96353 -16.84865 -16.39479 -16.09061 -16.00733 -15.73370 -15.18387 -14.99327 -14.68038 -14.27904 -13.95660 -13.81068 -13.56554 -13.44185 -13.04502 -12.59051 -12.46010 -12.40206 -12.39306 -12.11267 -11.98369 -11.89076 -11.82138 -11.51487 -11.47316 -11.20716 -10.95589 -10.86333 -10.73054 -10.47522 -10.20309 -10.06179 -9.95502 -9.78393 -9.71378 -9.10165 -8.66134 -6.89546 -5.77144 -3.11063 -0.40666 2.21502 2.42686 3.02580 3.24677 3.35134 3.40351 3.43153 3.47637 3.89566 4.03946 4.15839 4.21980 4.39662 4.43906 4.61515 4.71369 4.89189 4.99837 5.05920 5.09858 5.15255 5.29712 5.34694 5.38240 5.48442 5.49897 5.59144 5.61700 5.81587 5.95550 5.98573 6.26988 6.31003 6.41392 6.46865 6.60264 6.82911 7.37812 7.50321 7.57244 7.77300 8.06050 8.20111 9.16087 9.76597 10.42236 11.34628 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002380 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.761055 B =11761.626140 C =12714.980200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.721 5.721 16 C 0.521 3.479 17 O -0.538 6.538 18 C -0.099 4.099 19 H 0.119 0.881 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.605 4.605 23 S 2.418 3.582 24 O -0.942 6.942 25 O -0.936 6.936 26 C -0.584 4.584 27 C 0.143 3.857 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.019 0.981 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.768 -18.504 -3.698 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.372 5.372 16 C 0.305 3.695 17 O -0.415 6.415 18 C -0.121 4.121 19 H 0.137 0.863 20 C -0.175 4.175 21 C -0.147 4.147 22 C -0.735 4.735 23 S 2.600 3.400 24 O -0.939 6.939 25 O -0.933 6.933 26 C -0.713 4.713 27 C 0.017 3.983 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.036 0.964 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.267 -19.532 -3.619 22.361 hybrid contribution 0.614 1.872 0.287 1.991 sum 10.881 -17.660 -3.332 21.009 Atomic orbital electron populations 1.69973 1.04906 1.24983 1.56995 1.24816 0.95731 0.97736 1.02197 0.86048 0.78668 0.83753 0.77281 1.20521 1.21728 1.21735 1.19083 0.90411 0.82412 1.43888 0.90440 1.44485 1.01734 0.99865 1.87185 1.21143 0.84319 0.88145 1.01170 1.22860 0.95411 0.99407 0.99712 1.22626 0.98707 0.91926 1.00560 0.90150 1.21448 0.87114 0.93282 0.97375 1.46078 1.31443 1.13048 1.46669 1.20141 0.85302 0.81875 0.82154 1.90711 1.54508 1.60748 1.35523 1.21072 0.95550 0.92524 1.02926 0.86326 1.21790 0.92379 1.01524 1.01838 1.21279 0.98870 0.93601 1.00909 1.30263 1.18377 1.12782 1.12040 1.08055 0.78867 0.76795 0.76290 1.93607 1.82766 1.38991 1.78505 1.93597 1.83358 1.86984 1.29364 1.30170 1.20193 1.05633 1.15341 1.21569 0.93913 0.86204 0.96664 0.93752 0.93541 0.93879 0.91966 0.92208 0.91204 0.91541 0.76227 0.88623 0.89679 0.88716 0.89288 0.84677 0.84622 0.84122 0.83857 0.96382 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.31 55.49 0.57 -25.97 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.19 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 9 N -0.61 -14.78 3.39 -170.09 -0.58 -15.36 16 10 C 0.18 4.13 5.37 -3.06 -0.02 4.11 16 11 C -0.13 -2.34 6.42 -24.90 -0.16 -2.50 16 12 C -0.12 -1.80 3.05 -88.48 -0.27 -2.07 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.70 5.13 -4.04 -0.02 1.68 16 15 N -0.72 -7.62 5.31 -60.29 -0.32 -7.94 16 16 C 0.52 5.71 7.15 -10.98 -0.08 5.63 16 17 O -0.54 -7.97 15.94 5.56 0.09 -7.89 16 18 C -0.10 -0.70 2.35 -91.96 -0.22 -0.92 16 19 H 0.12 0.67 8.01 -51.93 -0.42 0.25 16 20 C -0.14 -0.70 4.90 -27.15 -0.13 -0.83 16 21 C -0.11 -0.43 5.73 -26.92 -0.15 -0.58 16 22 C -0.61 -2.37 6.35 37.17 0.24 -2.13 16 23 S 2.42 16.91 5.30 -107.50 -0.57 16.34 16 24 O -0.94 -10.14 18.10 -57.82 -1.05 -11.19 16 25 O -0.94 -9.52 17.95 -57.82 -1.04 -10.56 16 26 C -0.58 -4.07 4.94 37.18 0.18 -3.88 16 27 C 0.14 2.66 6.65 -2.54 -0.02 2.65 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 30 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 33 H 0.07 0.99 7.96 -51.93 -0.41 0.57 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.40 3.39 7.75 -40.82 -0.32 3.07 16 36 H 0.10 0.45 7.23 -51.93 -0.38 0.07 16 37 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.32 8.01 -51.93 -0.42 -0.09 16 40 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.14 1.07 8.00 -51.93 -0.42 0.65 16 44 H 0.02 0.35 7.91 -51.93 -0.41 -0.06 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -37.51 368.16 -10.56 -48.08 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.30 Total: -2.06 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.90 Total: -5.52 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.33 Total: -49.27 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -2.00 Total: -29.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 16.91 SS G_CDS: -0.57 Total: 16.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.51 -10.56 -48.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.104 kcal (2) G-P(sol) polarization free energy of solvation -37.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds