Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47139 * 239.99885 * 3 2 1 5 5 H 1.48506 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47023 * 119.99557 * 3 2 1 7 7 C 1.38810 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99697 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.65079 * 359.95935 * 9 7 2 11 11 C 1.54322 * 107.27376 * 181.09412 * 10 9 7 12 12 C 1.55155 * 102.94142 * 22.19308 * 11 10 9 13 13 H 1.08997 * 111.03926 * 82.59068 * 12 11 10 14 14 C 1.53004 * 111.00245 * 206.42647 * 12 11 10 15 15 N 1.46498 * 109.46891 * 178.65030 * 14 12 11 16 16 C 1.34776 * 119.99762 * 179.97438 * 15 14 12 17 17 O 1.21282 * 120.00362 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00072 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.29565 * 60.26307 * 18 16 15 20 20 C 1.52592 * 109.38391 * 300.53115 * 18 16 15 21 21 C 1.52586 * 110.64089 * 169.85608 * 20 18 16 22 22 C 1.53039 * 109.98998 * 69.98329 * 21 20 18 23 23 S 1.81675 * 108.99631 * 296.35379 * 22 21 20 24 24 O 1.42099 * 108.66081 * 299.96680 * 23 22 21 25 25 O 1.42101 * 108.65980 * 168.62860 * 23 22 21 26 26 C 1.53031 * 109.38567 * 180.02562 * 18 16 15 27 27 C 1.47429 * 125.64584 * 179.97438 * 9 7 2 28 28 H 0.97004 * 120.00007 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88538 * 300.51308 * 10 9 7 30 30 H 1.09002 * 109.88594 * 61.51795 * 10 9 7 31 31 H 1.08997 * 110.71969 * 263.82747 * 11 10 9 32 32 H 1.08999 * 110.72265 * 140.55554 * 11 10 9 33 33 H 1.08997 * 109.47557 * 58.64546 * 14 12 11 34 34 H 1.09005 * 109.46719 * 298.64609 * 14 12 11 35 35 H 0.96998 * 120.00588 * 359.97438 * 15 14 12 36 36 H 1.09000 * 109.23849 * 290.14850 * 20 18 16 37 37 H 1.08995 * 109.24424 * 49.59262 * 20 18 16 38 38 H 1.08998 * 109.38327 * 190.14418 * 21 20 18 39 39 H 1.09000 * 109.38630 * 309.93221 * 21 20 18 40 40 H 1.08991 * 109.55177 * 176.49710 * 22 21 20 41 41 H 1.09007 * 109.54592 * 56.20617 * 22 21 20 42 42 H 1.08996 * 109.55285 * 63.95177 * 26 18 16 43 43 H 1.09004 * 109.55388 * 303.65962 * 26 18 16 44 44 H 1.08997 * 110.37026 * 37.00276 * 27 9 7 45 45 H 1.09001 * 110.36939 * 274.67378 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4484 -4.0441 0.0289 12 6 0.8520 -4.6556 0.6138 13 1 0.8576 -4.5955 1.7021 14 6 1.0370 -6.1007 0.1464 15 7 2.2883 -6.6336 0.6909 16 6 2.6608 -7.8981 0.4102 17 8 1.9605 -8.5946 -0.2936 18 6 3.9483 -8.4462 0.9698 19 1 3.9073 -8.4210 2.0588 20 6 5.1155 -7.5901 0.4870 21 6 6.3967 -7.9599 1.2286 22 6 6.8723 -9.3473 0.7914 23 16 5.6259 -10.5784 1.2723 24 8 5.4689 -10.5390 2.6841 25 8 5.9379 -11.8122 0.6399 26 6 4.1313 -9.8915 0.5012 27 6 1.9335 -3.7311 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0515 0.8841 30 1 -0.5548 -2.0827 -0.9000 31 1 -0.6318 -4.4188 -0.9781 32 1 -1.2983 -4.2510 0.6792 33 1 1.0736 -6.1285 -0.9426 34 1 0.2011 -6.7059 0.4974 35 1 2.8487 -6.0765 1.2535 36 1 5.2601 -7.7497 -0.5815 37 1 4.8882 -6.5392 0.6657 38 1 7.1697 -7.2250 1.0039 39 1 6.2047 -7.9665 2.3015 40 1 7.8198 -9.5782 1.2781 41 1 7.0029 -9.3638 -0.2907 42 1 4.2374 -9.9127 -0.5833 43 1 3.2644 -10.4831 0.7959 44 1 2.8334 -3.7403 0.6155 45 1 2.1658 -4.0424 -1.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -93.081717 kcal Electronic energy + Delta-G solvation = -26559.076229 eV Core-core repulsion = 22704.078988 eV Total energy + Delta-G solvation = -3854.997241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.31165 -37.94233 -37.49750 -36.75451 -36.39349 -34.80800 -32.67096 -32.31962 -29.93521 -28.58508 -27.97701 -25.90641 -24.74006 -23.29228 -22.07543 -20.60763 -20.01691 -19.69109 -19.26350 -17.93700 -16.95562 -16.84768 -16.37765 -16.08360 -16.00082 -15.72933 -15.16400 -15.03479 -14.67629 -14.26281 -13.96158 -13.81275 -13.56984 -13.43834 -13.04872 -12.58196 -12.45624 -12.40258 -12.39048 -12.10111 -11.97334 -11.88236 -11.79506 -11.50795 -11.46619 -11.20051 -10.96364 -10.83137 -10.72290 -10.49130 -10.22873 -10.08567 -9.94906 -9.77867 -9.71123 -9.09874 -8.65354 -6.89715 -5.76822 -3.10868 -0.39913 2.21928 2.43364 3.03182 3.24920 3.35768 3.40071 3.41760 3.48431 3.90411 4.04850 4.16803 4.22847 4.40279 4.44184 4.62248 4.72251 4.89860 5.00672 5.06009 5.10926 5.16696 5.30500 5.34270 5.39212 5.47733 5.50795 5.60203 5.61662 5.81462 5.96187 5.98395 6.26562 6.32276 6.40448 6.46556 6.59865 6.82735 7.38603 7.49519 7.57292 7.77083 8.06662 8.20467 9.16121 9.76657 10.42392 11.34789 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.002425 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.574211 B =11544.668720 C =12555.338481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.721 5.721 16 C 0.521 3.479 17 O -0.538 6.538 18 C -0.099 4.099 19 H 0.119 0.881 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.605 4.605 23 S 2.418 3.582 24 O -0.936 6.936 25 O -0.942 6.942 26 C -0.584 4.584 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.035 0.965 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.001 -18.058 2.616 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.372 5.372 16 C 0.305 3.695 17 O -0.415 6.415 18 C -0.121 4.121 19 H 0.137 0.863 20 C -0.175 4.175 21 C -0.147 4.147 22 C -0.735 4.735 23 S 2.600 3.400 24 O -0.933 6.933 25 O -0.939 6.939 26 C -0.713 4.713 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.053 0.947 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 10.524 -19.093 2.604 21.957 hybrid contribution 0.576 1.869 -0.317 1.981 sum 11.100 -17.225 2.287 20.619 Atomic orbital electron populations 1.69954 1.04908 1.25229 1.56792 1.24814 0.95727 0.97725 1.02136 0.86196 0.78461 0.83177 0.77878 1.21169 1.21568 1.21153 1.18988 0.90353 0.82441 1.44200 0.90546 1.44463 1.01729 0.99827 1.87214 1.21153 0.84308 0.88160 1.01181 1.22856 0.95429 0.99402 0.99682 1.22636 0.98722 0.91927 1.00584 0.90144 1.21439 0.85003 0.93891 0.98853 1.46068 1.25022 1.13492 1.52635 1.20145 0.86679 0.81864 0.80785 1.90711 1.54706 1.58294 1.37820 1.21074 0.95148 0.92581 1.03270 0.86317 1.21789 0.92395 1.01371 1.01965 1.21283 0.97894 0.93947 1.01538 1.30267 1.17445 1.13293 1.12474 1.08055 0.78936 0.76814 0.76211 1.93597 1.85242 1.87018 1.27445 1.93608 1.82992 1.39237 1.78027 1.30162 1.21368 1.05287 1.14481 1.21559 0.93905 0.86236 0.96647 0.93642 0.93547 0.93859 0.92205 0.91935 0.91245 0.91565 0.76192 0.89670 0.88613 0.88713 0.89288 0.84632 0.84683 0.84110 0.83884 0.94715 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.61 -14.75 3.39 -170.06 -0.58 -15.33 16 10 C 0.18 4.12 5.38 -3.07 -0.02 4.10 16 11 C -0.13 -2.33 6.42 -24.90 -0.16 -2.49 16 12 C -0.12 -1.81 3.11 -88.46 -0.27 -2.09 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.13 1.71 5.12 -4.04 -0.02 1.69 16 15 N -0.72 -7.70 5.21 -60.29 -0.31 -8.02 16 16 C 0.52 5.75 7.15 -10.98 -0.08 5.67 16 17 O -0.54 -8.00 15.94 5.56 0.09 -7.91 16 18 C -0.10 -0.71 2.35 -91.96 -0.22 -0.93 16 19 H 0.12 0.68 8.01 -51.93 -0.42 0.26 16 20 C -0.14 -0.72 4.90 -27.15 -0.13 -0.85 16 21 C -0.11 -0.44 5.73 -26.92 -0.15 -0.59 16 22 C -0.61 -2.43 6.35 37.18 0.24 -2.19 16 23 S 2.42 17.06 5.31 -107.50 -0.57 16.49 16 24 O -0.94 -9.58 17.93 -57.81 -1.04 -10.61 16 25 O -0.94 -10.18 18.10 -57.81 -1.05 -11.23 16 26 C -0.58 -4.10 4.94 37.17 0.18 -3.92 16 27 C 0.14 2.65 6.41 -2.51 -0.02 2.63 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 30 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 31 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 3.48 7.62 -40.82 -0.31 3.17 16 36 H 0.08 0.41 8.09 -51.93 -0.42 -0.02 16 37 H 0.10 0.47 7.23 -51.93 -0.38 0.09 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.34 8.01 -51.93 -0.42 -0.08 16 40 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.14 1.07 8.00 -51.92 -0.42 0.66 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -37.40 367.95 -10.57 -47.97 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.31 Total: -1.78 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.90 Total: -5.66 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.32 Total: -49.31 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.99 Total: -29.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 17.06 SS G_CDS: -0.57 Total: 16.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.40 -10.57 -47.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.111 kcal (2) G-P(sol) polarization free energy of solvation -37.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds