Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47220 * 300.00490 * 3 2 1 6 6 H 1.48503 * 109.46906 * 60.00112 * 3 2 1 7 7 C 1.38819 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99449 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65303 * 359.97092 * 9 7 2 11 11 C 1.54322 * 107.27223 * 181.07962 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.19795 * 11 10 9 13 13 H 1.08999 * 111.00353 * 82.56825 * 12 11 10 14 14 C 1.52999 * 111.00486 * 206.41955 * 12 11 10 15 15 N 1.46505 * 109.47057 * 178.64648 * 14 12 11 16 16 C 1.34781 * 119.99550 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99369 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.38296 * 60.00372 * 18 16 15 20 20 C 1.52591 * 109.38250 * 179.79008 * 18 16 15 21 21 C 1.52589 * 110.64408 * 190.14265 * 20 18 16 22 22 C 1.53035 * 109.98498 * 290.01553 * 21 20 18 23 23 S 1.81664 * 109.00047 * 63.64674 * 22 21 20 24 24 O 1.42106 * 108.66603 * 60.03050 * 23 22 21 25 25 O 1.42098 * 108.66650 * 191.37078 * 23 22 21 26 26 C 1.53033 * 109.38470 * 300.20811 * 18 16 15 27 27 C 1.47426 * 125.64487 * 179.97438 * 9 7 2 28 28 H 0.97002 * 120.00454 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88389 * 300.50462 * 10 9 7 30 30 H 1.09004 * 109.87600 * 61.51420 * 10 9 7 31 31 H 1.08999 * 110.71849 * 140.55494 * 11 10 9 32 32 H 1.09002 * 110.72203 * 263.83177 * 11 10 9 33 33 H 1.08993 * 109.47274 * 298.64896 * 14 12 11 34 34 H 1.09005 * 109.47002 * 58.65139 * 14 12 11 35 35 H 0.96994 * 120.00157 * 0.02562 * 15 14 12 36 36 H 1.08997 * 109.24273 * 310.44510 * 20 18 16 37 37 H 1.09008 * 109.24307 * 69.84373 * 20 18 16 38 38 H 1.09003 * 109.38010 * 50.16937 * 21 20 18 39 39 H 1.08996 * 109.38106 * 169.85743 * 21 20 18 40 40 H 1.09004 * 109.54430 * 183.50318 * 22 21 20 41 41 H 1.09001 * 109.55090 * 303.69327 * 22 21 20 42 42 H 1.09001 * 109.55446 * 296.05389 * 26 18 16 43 43 H 1.08999 * 109.54763 * 56.34774 * 26 18 16 44 44 H 1.08998 * 110.36718 * 274.68805 * 27 9 7 45 45 H 1.09005 * 110.36600 * 37.01366 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 0.0279 12 6 0.8523 -4.6560 0.6118 13 1 0.8581 -4.5959 1.7001 14 6 1.0370 -6.1008 0.1436 15 7 2.2887 -6.6340 0.6871 16 6 2.6615 -7.8981 0.4047 17 8 1.9611 -8.5939 -0.2997 18 6 3.9488 -8.4467 0.9642 19 1 3.9106 -8.4194 2.0532 20 6 4.1288 -9.8891 0.4997 21 6 5.2836 -10.5536 1.2435 22 6 6.6145 -9.9492 0.7902 23 16 6.6520 -8.1914 1.2472 24 8 6.5237 -8.0855 2.6584 25 8 7.7575 -7.5767 0.5998 26 6 5.1202 -7.5920 0.4753 27 6 1.9334 -3.7311 -0.0016 28 1 -0.4851 0.8400 0.0004 29 1 -0.5570 -2.0519 0.8843 30 1 -0.5552 -2.0823 -0.8998 31 1 -1.2979 -4.2514 0.6787 32 1 -0.6324 -4.4183 -0.9792 33 1 0.2014 -6.7062 0.4947 34 1 1.0731 -6.1280 -0.9455 35 1 2.8490 -6.0774 1.2501 36 1 3.2110 -10.4452 0.6908 37 1 4.3377 -9.8986 -0.5701 38 1 5.1614 -10.3968 2.3153 39 1 5.2815 -11.6231 1.0332 40 1 7.4372 -10.4709 1.2792 41 1 6.7108 -10.0486 -0.2910 42 1 5.2016 -7.6704 -0.6088 43 1 4.9548 -6.5518 0.7558 44 1 2.1651 -4.0419 -1.0203 45 1 2.8337 -3.7406 0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -92.886215 kcal Electronic energy + Delta-G solvation = -26691.719096 eV Core-core repulsion = 22836.730333 eV Total energy + Delta-G solvation = -3854.988763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30994 -37.95046 -37.47418 -36.68674 -36.38351 -34.79776 -32.90723 -32.21077 -29.82603 -28.35304 -28.15471 -25.86525 -24.78834 -23.46035 -21.84457 -20.56975 -20.00017 -19.67552 -19.26809 -17.87984 -16.94359 -16.90393 -16.47947 -16.13474 -15.99586 -15.77009 -15.14281 -14.72325 -14.57611 -14.47750 -14.08668 -13.75925 -13.52147 -13.43244 -13.08351 -12.52567 -12.41092 -12.38262 -12.34165 -12.06965 -11.95893 -11.83324 -11.75758 -11.48977 -11.44116 -11.31920 -10.93076 -10.83635 -10.79272 -10.46678 -10.17155 -10.02459 -9.93303 -9.74291 -9.69129 -9.09387 -8.63578 -6.87285 -5.74685 -3.08527 -0.41246 2.16903 2.45955 3.02098 3.25059 3.37984 3.43780 3.46061 3.49240 3.98989 4.01116 4.15104 4.26376 4.35131 4.46577 4.62827 4.74982 4.84692 5.01911 5.06768 5.11802 5.17521 5.22870 5.35371 5.40611 5.49926 5.58301 5.63023 5.74017 5.82632 5.96906 5.99511 6.28007 6.32766 6.42706 6.47530 6.61341 6.84346 7.38488 7.52864 7.58956 7.79570 8.05868 8.22447 9.18629 9.78994 10.44466 11.37067 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.002827 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.417946 B = 9901.733260 C =11417.080958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.120 4.120 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.721 5.721 16 C 0.523 3.477 17 O -0.539 6.539 18 C -0.097 4.097 19 H 0.118 0.882 20 C -0.124 4.124 21 C -0.109 4.109 22 C -0.606 4.606 23 S 2.423 3.577 24 O -0.932 6.932 25 O -0.938 6.938 26 C -0.605 4.605 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.019 0.981 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 -22.982 2.675 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.372 5.372 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.119 4.119 19 H 0.136 0.864 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.735 4.735 23 S 2.604 3.396 24 O -0.929 6.929 25 O -0.935 6.935 26 C -0.733 4.733 27 C 0.015 3.985 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.037 0.963 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.079 -22.746 2.648 24.634 hybrid contribution 0.157 0.931 -0.309 0.993 sum 9.236 -21.815 2.339 23.805 Atomic orbital electron populations 1.69970 1.04904 1.24972 1.57033 1.24813 0.95733 0.97732 1.02165 0.86043 0.78737 0.83712 0.77259 1.20473 1.21738 1.21719 1.19103 0.90456 0.82409 1.43875 0.90400 1.44482 1.01736 0.99835 1.87185 1.21156 0.84313 0.88151 1.01189 1.22855 0.95387 0.99414 0.99661 1.22643 0.98739 0.91946 1.00618 0.90115 1.21442 0.84962 0.93906 0.98865 1.46095 1.24985 1.13646 1.52506 1.20133 0.86536 0.81861 0.80734 1.90711 1.54756 1.58326 1.37800 1.21071 0.92071 0.95575 1.03183 0.86386 1.21568 1.00182 0.92836 1.01554 1.21301 0.89821 1.02216 1.01409 1.30275 1.06623 1.24273 1.12336 1.07992 0.76866 0.78583 0.76170 1.93608 1.86443 1.85519 1.27330 1.93622 1.48242 1.74138 1.77475 1.30388 1.17271 1.10895 1.14763 1.21575 0.93948 0.86281 0.96687 0.93771 0.93535 0.93841 0.91932 0.92208 0.91500 0.91231 0.76287 0.88443 0.89913 0.89529 0.89022 0.84684 0.84687 0.83938 0.84015 0.96339 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.31 55.49 0.57 -26.31 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.11 3.39 -170.06 -0.58 -15.69 16 10 C 0.18 4.18 5.38 -3.07 -0.02 4.17 16 11 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16 12 C -0.12 -1.88 3.11 -88.46 -0.27 -2.16 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.75 5.12 -4.04 -0.02 1.73 16 15 N -0.72 -8.08 5.28 -60.29 -0.32 -8.40 16 16 C 0.52 5.78 7.14 -10.98 -0.08 5.70 16 17 O -0.54 -7.78 15.79 5.55 0.09 -7.69 16 18 C -0.10 -0.70 2.35 -91.96 -0.22 -0.92 16 19 H 0.12 0.67 8.01 -51.93 -0.42 0.26 16 20 C -0.12 -0.73 4.37 -27.15 -0.12 -0.85 16 21 C -0.11 -0.45 5.73 -26.92 -0.15 -0.60 16 22 C -0.61 -2.41 6.35 37.18 0.24 -2.18 16 23 S 2.42 17.14 5.31 -107.50 -0.57 16.57 16 24 O -0.93 -9.52 17.94 -57.81 -1.04 -10.56 16 25 O -0.94 -10.45 18.10 -57.81 -1.05 -11.50 16 26 C -0.60 -3.86 5.55 37.17 0.21 -3.65 16 27 C 0.14 2.73 6.41 -2.52 -0.02 2.71 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 30 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.40 3.85 7.69 -40.82 -0.31 3.54 16 36 H 0.10 0.66 7.73 -51.93 -0.40 0.25 16 37 H 0.08 0.47 8.09 -51.92 -0.42 0.05 16 38 H 0.09 0.33 8.01 -51.93 -0.42 -0.08 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.14 0.85 7.45 -51.93 -0.39 0.46 16 44 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -37.65 367.95 -10.54 -48.19 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.31 Total: -1.72 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.86 Total: -5.40 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.32 Total: -50.40 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -2.00 Total: -29.75 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 17.14 SS G_CDS: -0.57 Total: 16.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.65 -10.54 -48.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.695 kcal (2) G-P(sol) polarization free energy of solvation -37.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds