Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48508 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46982 * 299.99704 * 3 2 1 6 6 H 1.48494 * 109.47162 * 60.00119 * 3 2 1 7 7 C 1.38823 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99779 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64463 * 0.02562 * 9 7 2 11 11 C 1.54918 * 104.82827 * 204.10316 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.08999 * 110.72004 * 276.95701 * 12 11 10 14 14 C 1.52999 * 110.71747 * 153.86356 * 12 11 10 15 15 N 1.46502 * 109.47030 * 174.99740 * 14 12 11 16 16 C 1.34776 * 119.99787 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99758 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.38410 * 299.79034 * 18 16 15 20 20 C 1.52584 * 109.38593 * 180.02562 * 18 16 15 21 21 C 1.52585 * 110.64578 * 169.85548 * 20 18 16 22 22 C 1.53034 * 109.98456 * 69.98373 * 21 20 18 23 23 S 1.81672 * 109.00070 * 296.35478 * 22 21 20 24 24 O 1.42098 * 108.66021 * 168.62652 * 23 22 21 25 25 O 1.42098 * 108.66214 * 299.96638 * 23 22 21 26 26 C 1.53030 * 109.38608 * 59.47583 * 18 16 15 27 27 C 1.47015 * 125.64654 * 179.97438 * 9 7 2 28 28 H 0.96999 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36633 * 85.27589 * 10 9 7 30 30 H 1.08996 * 110.37033 * 322.93969 * 10 9 7 31 31 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 32 32 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 33 33 H 1.08999 * 109.47309 * 294.99608 * 14 12 11 34 34 H 1.09001 * 109.47689 * 54.99730 * 14 12 11 35 35 H 0.96996 * 120.00173 * 0.02562 * 15 14 12 36 36 H 1.08997 * 109.24216 * 290.16143 * 20 18 16 37 37 H 1.09007 * 109.24347 * 49.59586 * 20 18 16 38 38 H 1.08999 * 109.38508 * 190.14289 * 21 20 18 39 39 H 1.09001 * 109.38180 * 309.82960 * 21 20 18 40 40 H 1.08997 * 109.55220 * 56.21062 * 22 21 20 41 41 H 1.08998 * 109.55192 * 176.49723 * 22 21 20 42 42 H 1.09005 * 109.55175 * 303.66365 * 26 18 16 43 43 H 1.09005 * 109.54960 * 63.94485 * 26 18 16 44 44 H 1.09000 * 109.88350 * 59.54542 * 27 9 7 45 45 H 1.08997 * 110.01690 * 298.45057 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5331 0.0017 11 6 -0.4017 -3.9319 0.6146 12 6 0.7783 -4.7524 0.0300 13 1 0.5445 -5.1014 -0.9758 14 6 1.1230 -5.9307 0.9432 15 7 2.1566 -6.7533 0.3097 16 6 2.6202 -7.8530 0.9359 17 8 2.1814 -8.1620 2.0235 18 6 3.6839 -8.6989 0.2845 19 1 3.3124 -9.0772 -0.6679 20 6 4.0261 -9.8733 1.1966 21 6 4.9094 -10.8814 0.4673 22 6 6.3030 -10.2901 0.2436 23 16 6.1639 -8.8440 -0.8473 24 8 7.4027 -8.1479 -0.8396 25 8 5.6063 -9.2609 -2.0860 26 6 4.9308 -7.8465 0.0384 27 6 1.9317 -3.7275 0.0017 28 1 -0.4850 0.8400 0.0004 29 1 -0.5274 -2.4876 -1.0167 30 1 -0.5993 -1.7584 0.6168 31 1 -1.3591 -4.3326 0.2814 32 1 -0.3520 -3.8970 1.7029 33 1 1.4920 -5.5550 1.8975 34 1 0.2307 -6.5339 1.1107 35 1 2.5079 -6.5060 -0.5600 36 1 4.5535 -9.5035 2.0758 37 1 3.1051 -10.3646 1.5106 38 1 4.9930 -11.7886 1.0656 39 1 4.4609 -11.1251 -0.4959 40 1 6.7280 -9.9859 1.2001 41 1 6.9459 -11.0374 -0.2216 42 1 4.6652 -6.9766 -0.5624 43 1 5.3436 -7.5200 0.9930 44 1 2.5586 -3.8506 0.8849 45 1 2.5294 -3.8666 -0.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -91.540307 kcal Electronic energy + Delta-G solvation = -26660.425204 eV Core-core repulsion = 22805.494804 eV Total energy + Delta-G solvation = -3854.930400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31174 -37.95584 -37.48313 -36.69016 -36.39678 -34.80472 -32.92309 -32.21835 -29.82812 -28.33478 -28.16032 -25.86752 -24.79495 -23.44642 -21.84005 -20.63166 -20.00837 -19.60779 -19.27734 -17.86859 -16.95112 -16.92320 -16.50650 -16.13315 -16.00944 -15.77759 -15.19016 -14.76870 -14.58924 -14.46001 -14.09768 -13.73486 -13.55200 -13.44601 -12.92148 -12.56096 -12.52641 -12.39418 -12.30684 -12.01936 -11.84364 -11.81080 -11.73550 -11.56287 -11.48576 -11.32511 -10.98605 -10.84689 -10.79618 -10.47813 -10.16275 -10.04891 -9.94297 -9.76571 -9.53950 -9.09355 -8.68810 -6.87526 -5.69139 -3.10981 -0.42375 2.16097 2.45901 3.02034 3.23646 3.37715 3.43411 3.45781 3.48370 3.98200 4.00477 4.14534 4.25572 4.34477 4.45741 4.62287 4.74308 4.83864 5.01976 5.06208 5.12193 5.18357 5.22146 5.34148 5.39988 5.48592 5.57798 5.64611 5.73894 5.81853 5.99521 6.03724 6.28633 6.32205 6.49368 6.53059 6.65539 6.84204 7.38080 7.47237 7.59554 7.81760 8.06021 8.32587 9.18484 9.79396 10.43698 11.34932 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002707 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.050300 B =10340.538980 C =11560.856676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.722 5.722 16 C 0.523 3.477 17 O -0.538 6.538 18 C -0.097 4.097 19 H 0.118 0.882 20 C -0.124 4.124 21 C -0.109 4.109 22 C -0.605 4.605 23 S 2.423 3.577 24 O -0.938 6.938 25 O -0.933 6.933 26 C -0.605 4.605 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.012 0.988 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.023 0.977 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -23.458 0.773 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.373 5.373 16 C 0.307 3.693 17 O -0.415 6.415 18 C -0.119 4.119 19 H 0.136 0.864 20 C -0.162 4.162 21 C -0.147 4.147 22 C -0.735 4.735 23 S 2.604 3.396 24 O -0.935 6.935 25 O -0.930 6.930 26 C -0.733 4.733 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.041 0.959 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.188 -23.236 0.758 24.648 hybrid contribution 0.337 0.958 0.215 1.038 sum 8.525 -22.278 0.972 23.873 Atomic orbital electron populations 1.69800 1.04911 1.24719 1.57612 1.24797 0.95742 0.97776 1.02357 0.85995 0.78671 0.83540 0.77273 1.20507 1.21722 1.21702 1.19124 0.90528 0.82463 1.43092 0.90469 1.44507 1.01992 0.99705 1.86833 1.21940 0.84661 0.92506 0.98212 1.23008 0.95494 0.98611 1.00310 1.22465 0.98402 0.94002 0.98660 0.90478 1.21513 0.90066 0.91069 0.96561 1.46109 1.41620 1.26432 1.23128 1.20134 0.82479 0.81123 0.85571 1.90715 1.59448 1.70812 1.20513 1.21067 0.92988 0.95370 1.02448 0.86411 1.21568 1.02185 0.94162 0.98251 1.21301 0.90506 0.99875 1.03059 1.30268 1.06204 1.19854 1.17151 1.07985 0.76282 0.78156 0.77173 1.93623 1.40713 1.72107 1.87036 1.93603 1.79543 1.81663 1.38166 1.30388 1.12857 1.13746 1.16355 1.21333 0.93439 0.86067 0.97683 0.93739 0.96975 0.87503 0.92084 0.91836 0.91081 0.91450 0.76394 0.89897 0.88418 0.89005 0.89535 0.84680 0.84663 0.84026 0.83944 0.95865 0.96443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.19 10.27 -15.05 -0.15 -6.34 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 10 C 0.15 3.59 5.89 -2.52 -0.01 3.58 16 11 C -0.13 -2.42 6.53 -24.58 -0.16 -2.58 16 12 C -0.12 -1.83 2.96 -88.78 -0.26 -2.10 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 1.79 5.02 -4.04 -0.02 1.77 16 15 N -0.72 -8.15 5.34 -60.29 -0.32 -8.47 16 16 C 0.52 5.84 7.15 -10.98 -0.08 5.76 16 17 O -0.54 -7.91 15.79 5.56 0.09 -7.82 16 18 C -0.10 -0.70 2.35 -91.97 -0.22 -0.91 16 19 H 0.12 0.66 8.01 -51.93 -0.42 0.24 16 20 C -0.12 -0.74 4.37 -27.16 -0.12 -0.86 16 21 C -0.11 -0.45 5.73 -26.93 -0.15 -0.60 16 22 C -0.61 -2.40 6.35 37.17 0.24 -2.16 16 23 S 2.42 16.92 5.31 -107.50 -0.57 16.35 16 24 O -0.94 -10.38 18.10 -57.81 -1.05 -11.42 16 25 O -0.93 -9.36 17.93 -57.81 -1.04 -10.40 16 26 C -0.61 -3.86 5.55 37.17 0.21 -3.65 16 27 C 0.14 2.77 6.75 -3.07 -0.02 2.75 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 3.76 7.80 -40.82 -0.32 3.44 16 36 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.10 0.66 7.73 -51.93 -0.40 0.26 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.33 8.01 -51.93 -0.42 -0.09 16 40 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.14 0.84 7.43 -51.92 -0.39 0.45 16 43 H 0.14 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.02 0.46 7.68 -51.93 -0.40 0.07 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -37.44 367.26 -10.49 -47.93 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.24 Total: -1.04 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.86 Total: -5.77 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.34 Total: -50.33 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -2.00 Total: -29.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 16.92 SS G_CDS: -0.57 Total: 16.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.44 -10.49 -47.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.612 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds