Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99547 * 2 1 4 4 O 1.21629 * 119.99887 * 175.38830 * 3 2 1 5 5 C 1.47160 * 120.00159 * 355.11195 * 3 2 1 6 6 C 1.38405 * 126.88635 * 353.38787 * 5 3 2 7 7 C 1.39673 * 105.36219 * 179.85711 * 6 5 3 8 8 N 1.30858 * 107.85908 * 0.40928 * 7 6 5 9 9 N 1.28440 * 110.93142 * 359.73746 * 8 7 6 10 10 C 1.46504 * 125.19408 * 180.02562 * 9 8 7 11 11 F 1.39897 * 109.47506 * 115.85941 * 10 9 8 12 12 F 1.39901 * 109.46924 * 235.85679 * 10 9 8 13 13 C 1.46503 * 120.00428 * 180.02562 * 2 1 3 14 14 H 1.08993 * 110.88775 * 177.57294 * 13 2 1 15 15 C 1.54915 * 111.00022 * 301.45126 * 13 2 1 16 16 N 1.47423 * 104.82918 * 155.08510 * 15 13 2 17 17 C 1.36938 * 125.64878 * 155.83678 * 16 15 13 18 18 H 1.08001 * 119.99514 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00199 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99764 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46861 * 60.00329 * 21 19 17 23 23 H 1.48497 * 109.47045 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47127 * 300.00406 * 21 19 17 25 25 C 1.47017 * 108.70547 * 335.86788 * 16 15 13 26 26 C 1.54331 * 107.27066 * 1.06087 * 25 16 15 27 27 H 1.08998 * 110.72213 * 263.82436 * 26 25 16 28 28 O 1.42908 * 110.71814 * 140.55354 * 26 25 16 29 29 H 1.08999 * 109.47470 * 85.68966 * 1 2 3 30 30 H 1.09000 * 109.46509 * 205.68370 * 1 2 3 31 31 H 1.08992 * 109.47339 * 325.68191 * 1 2 3 32 32 H 1.08005 * 127.31784 * 359.97438 * 6 5 3 33 33 H 1.07999 * 126.06860 * 180.16561 * 7 6 5 34 34 H 1.08995 * 109.47007 * 355.85248 * 10 9 8 35 35 H 1.08998 * 110.36626 * 273.92232 * 15 13 2 36 36 H 1.08998 * 110.36517 * 36.13620 * 15 13 2 37 37 H 0.96996 * 119.99901 * 180.02562 * 20 19 17 38 38 H 1.08996 * 109.88274 * 120.47768 * 25 16 15 39 39 H 1.08999 * 109.88773 * 241.64646 * 25 16 15 40 40 H 0.96696 * 113.99555 * 66.48103 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3521 1.1690 0.0847 5 6 1.4070 2.4394 -0.1086 6 6 0.0527 2.6012 -0.3438 7 6 -0.1584 3.9818 -0.3558 8 7 0.9946 4.5659 -0.1516 9 7 1.9291 3.6973 -0.0033 10 6 3.3396 4.0080 0.2419 11 9 3.7102 3.5294 1.5032 12 9 4.1289 3.3977 -0.7388 13 6 2.1976 -1.2687 -0.0006 14 1 3.2730 -1.0964 -0.0436 15 6 1.8217 -2.1274 1.2328 16 7 2.0994 -3.5164 0.8243 17 6 2.3701 -4.5583 1.6707 18 1 2.3922 -4.3950 2.7381 19 6 2.6149 -5.8243 1.1569 20 7 2.5874 -6.0233 -0.1439 21 14 2.9849 -7.2454 2.3115 22 1 1.8368 -7.4474 3.2315 23 1 3.2073 -8.4816 1.5195 24 1 4.2038 -6.9368 3.1015 25 6 2.0382 -3.5977 -0.6423 26 6 1.7321 -2.1791 -1.1675 27 1 0.6644 -2.0573 -1.3495 28 8 2.4828 -1.9058 -2.3524 29 1 -0.3634 0.0772 -1.0247 30 1 -0.3632 -0.9262 0.4454 31 1 -0.3633 0.8487 0.5793 32 1 -0.6846 1.8248 -0.4857 33 1 -1.1046 4.4791 -0.5106 34 1 3.4854 5.0876 0.2057 35 1 2.4389 -1.8530 2.0883 36 1 0.7656 -2.0046 1.4729 37 1 2.7581 -6.9080 -0.5029 38 1 2.9958 -3.9396 -1.0349 39 1 1.2459 -4.2832 -0.9430 40 1 2.2305 -2.4487 -3.1118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047396118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = -28.598677 kcal Electronic energy + Delta-G solvation = -29510.256884 eV Core-core repulsion = 25000.675108 eV Total energy + Delta-G solvation = -4509.581776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.38397 -47.48405 -42.83613 -39.83520 -37.83165 -35.46995 -34.94739 -33.03194 -32.19631 -31.08252 -28.52604 -27.56540 -27.10927 -26.32640 -24.63587 -23.00155 -22.31248 -20.66894 -20.45924 -19.57530 -18.04298 -17.99815 -17.68527 -17.18192 -17.07161 -16.47472 -15.94473 -15.85999 -15.17531 -14.78969 -14.72154 -14.33266 -14.21500 -14.09988 -13.78244 -13.62816 -13.51479 -13.13917 -13.04247 -12.72059 -12.47457 -12.31063 -12.09062 -11.83815 -11.51999 -11.26107 -11.01608 -10.88587 -10.81318 -10.22256 -10.04612 -9.98279 -9.89734 -9.86026 -9.42739 -9.33945 -8.75554 -8.48503 -6.95853 -5.79408 -3.14950 0.87792 1.51038 2.22512 2.81447 3.09491 3.35471 3.37929 3.42321 3.43333 3.81054 4.17510 4.39742 4.42711 4.56718 4.63931 4.77588 5.00979 5.10613 5.15332 5.32804 5.36214 5.42790 5.54970 5.57485 5.68146 5.77597 5.95029 6.02434 6.07355 6.10972 6.40707 6.51729 6.76418 7.29423 7.34645 7.44245 7.54086 7.69946 8.07888 8.14106 8.15071 9.10907 9.70960 10.33423 11.31906 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.003193 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.139691 B = 8766.084514 C = 9047.571147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.580 5.580 3 C 0.579 3.421 4 O -0.521 6.521 5 C -0.005 4.005 6 C -0.197 4.197 7 C 0.021 3.979 8 N -0.271 5.271 9 N -0.331 5.331 10 C 0.502 3.498 11 F -0.170 7.170 12 F -0.160 7.160 13 C 0.136 3.864 14 H 0.118 0.882 15 C 0.132 3.868 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.153 3.847 26 C 0.066 3.934 27 H 0.057 0.943 28 O -0.561 6.561 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.186 0.814 33 H 0.196 0.804 34 H 0.166 0.834 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 20.023 -2.625 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.312 5.312 3 C 0.365 3.635 4 O -0.397 6.397 5 C -0.131 4.131 6 C -0.225 4.225 7 C -0.159 4.159 8 N -0.099 5.099 9 N -0.127 5.127 10 C 0.369 3.631 11 F -0.151 7.151 12 F -0.141 7.141 13 C 0.032 3.968 14 H 0.135 0.865 15 C 0.005 3.995 16 N -0.326 5.326 17 C -0.361 4.361 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.028 3.972 26 C 0.006 3.994 27 H 0.075 0.925 28 O -0.366 6.366 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.203 0.797 33 H 0.213 0.787 34 H 0.183 0.817 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.862 21.253 -2.064 22.143 hybrid contribution -0.559 -2.135 0.069 2.208 sum -6.421 19.118 -1.995 20.265 Atomic orbital electron populations 1.22565 0.79856 1.04688 1.02029 1.47347 1.06957 1.05156 1.71699 1.16886 0.86547 0.82164 0.77925 1.90895 1.12774 1.86711 1.49316 1.21731 0.94420 0.87670 1.09306 1.23255 0.94346 0.98155 1.06703 1.23826 0.96203 0.92515 1.03395 1.73110 0.97215 1.20363 1.19258 1.46886 1.08654 1.03541 1.53658 1.21117 0.72585 0.96132 0.73251 1.93161 1.90225 1.91005 1.40756 1.93204 1.72555 1.86302 1.62079 1.22504 0.98419 0.80310 0.95554 0.86453 1.21783 0.97978 0.85599 0.94186 1.44220 1.83378 1.02998 1.01992 1.19031 1.41647 0.86443 0.88954 0.90150 1.24817 1.01536 0.97604 0.96167 1.69916 1.55320 1.21776 1.09917 0.86142 0.78281 0.81518 0.79474 1.21071 1.21527 1.21011 1.21847 1.01841 0.89420 0.84129 1.23554 0.93535 0.97387 0.84931 0.92475 1.86498 1.64022 1.64817 1.21232 0.91873 0.89591 0.89472 0.79686 0.78737 0.81709 0.93185 0.95535 0.93535 0.92080 0.93282 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 7.32 59.85 0.44 0.99 16 2 N -0.58 -9.08 2.91 -172.85 -0.50 -9.59 16 3 C 0.58 9.76 7.64 -12.64 -0.10 9.67 16 4 O -0.52 -10.57 13.14 5.25 0.07 -10.50 16 5 C -0.01 -0.07 6.69 -82.06 -0.55 -0.62 16 6 C -0.20 -1.95 8.87 -38.98 -0.35 -2.29 16 7 C 0.02 0.18 12.03 -17.43 -0.21 -0.03 16 8 N -0.27 -3.01 11.90 30.59 0.36 -2.65 16 9 N -0.33 -4.24 3.62 -62.39 -0.23 -4.46 16 10 C 0.50 5.86 5.67 59.85 0.34 6.20 16 11 F -0.17 -2.34 16.84 2.25 0.04 -2.30 16 12 F -0.16 -2.31 15.59 2.25 0.04 -2.28 16 13 C 0.14 2.59 3.17 -65.78 -0.21 2.38 16 14 H 0.12 2.63 7.03 -51.93 -0.36 2.26 16 15 C 0.13 2.71 6.79 -2.53 -0.02 2.69 16 16 N -0.60 -14.99 3.39 -170.07 -0.58 -15.56 16 17 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 20 N -0.92 -26.43 10.31 55.49 0.57 -25.86 16 21 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.15 3.60 5.15 -3.06 -0.02 3.59 16 26 C 0.07 1.24 3.89 -24.89 -0.10 1.15 16 27 H 0.06 0.94 7.09 -51.93 -0.37 0.57 16 28 O -0.56 -10.27 13.39 -35.23 -0.47 -10.74 16 29 H 0.06 0.58 7.57 -51.93 -0.39 0.18 16 30 H 0.09 0.96 6.34 -51.93 -0.33 0.63 16 31 H 0.09 0.76 5.03 -51.93 -0.26 0.50 16 32 H 0.19 1.31 4.61 -52.48 -0.24 1.06 16 33 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.17 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.51 6.32 -51.93 -0.33 0.18 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 39 H 0.05 1.23 7.51 -51.93 -0.39 0.85 16 40 H 0.37 5.22 9.12 45.56 0.42 5.64 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -35.70 333.35 -5.17 -40.87 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.45 Total: 4.32 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: -1.01 Total: 16.96 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.37 Total: -58.12 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.40 Total: -21.24 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.70 -5.17 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047396118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds