Wall clock time and date at job start Tue Mar 31 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99679 * 2 1 4 4 H 1.48505 * 109.46855 * 270.00267 * 3 2 1 5 5 H 1.48497 * 109.47176 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99978 * 3 2 1 7 7 C 1.38809 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 195.66741 * 7 2 1 9 9 N 1.36936 * 120.00022 * 15.67682 * 7 2 1 10 10 C 1.44577 * 118.64625 * 206.49127 * 9 7 2 11 11 C 1.54862 * 109.59843 * 270.72435 * 10 9 7 12 12 C 1.47091 * 110.32053 * 288.72937 * 11 10 9 13 13 C 1.52571 * 114.32649 * 62.80652 * 12 11 10 14 14 H 1.08992 * 109.48856 * 34.97140 * 13 12 11 15 15 N 1.46502 * 109.48950 * 155.02178 * 13 12 11 16 16 C 1.34777 * 119.99518 * 204.99980 * 15 13 12 17 17 O 1.21279 * 120.00016 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99562 * 180.27698 * 16 15 13 19 19 C 1.52999 * 109.47072 * 179.72239 * 18 16 15 20 20 C 1.53042 * 113.15527 * 275.37387 * 19 18 16 21 21 S 1.81417 * 89.89205 * 211.85347 * 20 19 18 22 22 O 1.42111 * 112.75077 * 280.47407 * 21 20 19 23 23 O 1.42098 * 112.75788 * 136.72771 * 21 20 19 24 24 C 1.53039 * 113.15427 * 174.99758 * 19 18 16 25 25 C 1.50877 * 109.35403 * 274.98348 * 13 12 11 26 26 C 1.47607 * 118.64471 * 26.46387 * 9 7 2 27 27 H 0.96993 * 120.00787 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45516 * 150.67939 * 10 9 7 29 29 H 1.09006 * 109.45001 * 30.75939 * 10 9 7 30 30 H 1.09003 * 109.32664 * 168.47062 * 11 10 9 31 31 H 1.08996 * 109.33102 * 48.99207 * 11 10 9 32 32 H 1.09006 * 108.51600 * 301.55061 * 12 11 10 33 33 H 1.08998 * 108.38963 * 183.97080 * 12 11 10 34 34 H 0.96998 * 120.00116 * 25.00124 * 15 13 12 35 35 H 1.08997 * 109.46817 * 299.72185 * 18 16 15 36 36 H 1.08998 * 109.47392 * 59.72188 * 18 16 15 37 37 H 1.09009 * 112.49465 * 45.21197 * 19 18 16 38 38 H 1.09004 * 113.14197 * 327.11099 * 20 19 18 39 39 H 1.08997 * 113.15033 * 96.58430 * 20 19 18 40 40 H 1.09001 * 113.14965 * 263.40902 * 24 19 18 41 41 H 1.09001 * 113.14708 * 32.88732 * 24 19 18 42 42 H 1.08996 * 109.36851 * 212.07376 * 25 13 12 43 43 H 1.09002 * 109.37492 * 331.69460 * 25 13 12 44 44 H 1.09005 * 108.94677 * 258.56143 * 26 9 7 45 45 H 1.09002 * 108.94690 * 17.27354 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0602 -1.2193 0.2531 9 7 1.3639 -2.3661 -0.3194 10 6 1.8695 -3.6097 0.2173 11 6 2.9232 -4.2028 -0.7503 12 6 2.2712 -4.7076 -1.9683 13 6 1.5628 -3.6365 -2.7921 14 1 2.1223 -2.7030 -2.7329 15 7 1.4804 -4.0693 -4.1893 16 6 1.3764 -3.1540 -5.1732 17 8 1.3505 -1.9723 -4.9018 18 6 1.2853 -3.5994 -6.6100 19 6 1.1693 -2.3732 -7.5176 20 6 -0.2674 -1.8664 -7.6638 21 16 0.1025 -1.3150 -9.3520 22 8 0.7978 -0.0761 -9.3856 23 8 -0.9314 -1.6336 -10.2733 24 6 1.1937 -2.7228 -9.0074 25 6 0.1716 -3.4255 -2.2476 26 6 0.1793 -2.2994 -1.1975 27 1 -0.4851 0.8399 0.0004 28 1 1.0471 -4.3153 0.3351 29 1 2.3308 -3.4254 1.1876 30 1 3.4469 -5.0210 -0.2558 31 1 3.6415 -3.4287 -1.0199 32 1 1.5401 -5.4637 -1.6817 33 1 3.0290 -5.1801 -2.5934 34 1 1.5007 -5.0144 -4.4063 35 1 2.1805 -4.1628 -6.8731 36 1 0.4069 -4.2317 -6.7394 37 1 1.8763 -1.5879 -7.2501 38 1 -1.0090 -2.6644 -7.6264 39 1 -0.5031 -1.0455 -6.9867 40 1 2.1817 -2.6190 -9.4558 41 1 0.7336 -3.6858 -9.2291 42 1 -0.4986 -3.1545 -3.0633 43 1 -0.1794 -4.3481 -1.7852 44 1 -0.7195 -2.3790 -0.5859 45 1 0.1733 -1.3380 -1.7113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052502240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:06 Heat of formation + Delta-G solvation = -63.889523 kcal Electronic energy + Delta-G solvation = -27160.131460 eV Core-core repulsion = 23306.400087 eV Total energy + Delta-G solvation = -3853.731372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94980 -38.09578 -37.53495 -36.81800 -36.23350 -34.63918 -32.88280 -31.16340 -30.59111 -29.02048 -26.93226 -25.93051 -23.99683 -23.27558 -21.55288 -20.29703 -19.88986 -19.22336 -19.06798 -17.19008 -16.81690 -16.62996 -16.53027 -16.24472 -15.80342 -15.37272 -15.06294 -14.54978 -14.29818 -13.75455 -13.58523 -13.46883 -13.22960 -13.10394 -12.82359 -12.70090 -12.48716 -12.45551 -12.41055 -11.91911 -11.59591 -11.58944 -11.38944 -11.07580 -10.88462 -10.83439 -10.75463 -10.56049 -10.38891 -10.20152 -10.07510 -9.93161 -9.69451 -9.57071 -9.49176 -8.73040 -8.31207 -6.61658 -5.71504 -3.15558 -0.10182 1.74172 2.84835 3.28659 3.44079 3.45037 3.51495 3.52723 3.74094 3.94724 4.36151 4.57222 4.61139 4.79603 4.87577 5.06097 5.11078 5.16801 5.27119 5.30185 5.32852 5.49872 5.56965 5.59677 5.73726 5.80344 5.99957 6.10313 6.20043 6.29371 6.43916 6.48856 6.59400 6.68814 6.76589 6.85529 7.00571 7.06795 7.48025 7.74430 7.77576 7.89752 8.48226 8.54132 9.30511 9.97465 10.41582 11.36047 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.003286 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.466367 B = 8519.981337 C = 9893.869711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.105 4.105 13 C 0.153 3.847 14 H 0.103 0.897 15 N -0.729 5.729 16 C 0.503 3.497 17 O -0.524 6.524 18 C -0.118 4.118 19 C -0.052 4.052 20 C -0.594 4.594 21 S 2.407 3.593 22 O -0.913 6.913 23 O -0.932 6.932 24 C -0.601 4.601 25 C -0.146 4.146 26 C 0.183 3.817 27 H 0.253 0.747 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.025 0.975 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -12.792 -16.649 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.143 4.143 13 C 0.049 3.951 14 H 0.121 0.879 15 N -0.380 5.380 16 C 0.288 3.712 17 O -0.399 6.399 18 C -0.159 4.159 19 C -0.073 4.073 20 C -0.723 4.723 21 S 2.589 3.411 22 O -0.910 6.910 23 O -0.929 6.929 24 C -0.729 4.729 25 C -0.186 4.186 26 C 0.057 3.943 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.224 0.776 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.108 -10.957 -17.292 20.501 hybrid contribution 0.722 -0.522 0.726 1.149 sum 1.830 -11.480 -16.566 20.238 Atomic orbital electron populations 1.70047 1.05249 1.25403 1.54046 1.24998 0.95230 0.98320 1.00505 0.86350 0.79076 0.83895 0.77798 1.21304 1.21826 1.20510 1.19177 0.92361 0.85023 1.42442 0.91761 1.43670 1.32381 1.01915 1.53272 1.20691 0.93877 0.88405 0.94207 1.21453 1.00358 0.99945 0.96938 1.20561 0.99063 0.97469 0.97255 1.20535 0.97651 0.99267 0.77601 0.87927 1.46342 1.75096 1.09112 1.07480 1.20484 0.76890 0.86655 0.87155 1.90796 1.48282 1.16777 1.84067 1.21495 1.04698 0.97779 0.91970 1.21216 0.95326 0.99376 0.91373 1.31014 1.04164 1.12342 1.24747 1.08452 0.77605 0.76979 0.78049 1.93735 1.72605 1.38242 1.86402 1.93631 1.53730 1.85305 1.60231 1.31067 1.17164 1.20609 1.04089 1.22440 0.95469 1.00821 0.99877 1.20945 0.88508 0.95652 0.89154 0.93719 0.95029 0.93584 0.93056 0.91950 0.92869 0.93504 0.77634 0.88257 0.88451 0.85769 0.84061 0.84886 0.85637 0.83912 0.92723 0.93696 0.95732 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 11.01 55.49 0.61 -26.05 16 2 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 3 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.26 -7.16 9.44 -15.06 -0.14 -7.30 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.52 2.27 -172.06 -0.39 -14.91 16 10 C 0.16 3.17 5.65 -4.09 -0.02 3.14 16 11 C -0.15 -2.45 5.74 -28.59 -0.16 -2.61 16 12 C -0.11 -1.56 4.69 -29.79 -0.14 -1.70 16 13 C 0.15 2.61 2.06 -69.21 -0.14 2.46 16 14 H 0.10 2.26 6.92 -51.93 -0.36 1.90 16 15 N -0.73 -9.50 4.93 -55.06 -0.27 -9.77 16 16 C 0.50 6.99 7.65 -10.98 -0.08 6.91 16 17 O -0.52 -10.09 15.44 5.56 0.09 -10.01 16 18 C -0.12 -0.99 5.48 -27.88 -0.15 -1.14 16 19 C -0.05 -0.45 2.80 -90.58 -0.25 -0.71 16 20 C -0.59 -4.85 7.48 37.18 0.28 -4.57 16 21 S 2.41 18.67 7.55 -107.50 -0.81 17.86 16 22 O -0.91 -10.84 18.18 -57.30 -1.04 -11.88 16 23 O -0.93 -9.90 18.18 -57.30 -1.04 -10.95 16 24 C -0.60 -3.22 7.49 37.18 0.28 -2.94 16 25 C -0.15 -2.75 5.38 -27.29 -0.15 -2.90 16 26 C 0.18 4.42 4.67 -2.92 -0.01 4.41 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.73 7.36 -51.93 -0.38 0.34 16 33 H 0.05 0.59 8.04 -51.93 -0.42 0.18 16 34 H 0.39 3.59 8.60 -40.82 -0.35 3.24 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.59 7.89 -51.93 -0.41 0.18 16 37 H 0.12 1.29 7.71 -51.92 -0.40 0.89 16 38 H 0.14 0.87 7.94 -51.93 -0.41 0.45 16 39 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.14 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.05 1.03 7.85 -51.93 -0.41 0.62 16 43 H 0.04 0.77 7.32 -51.93 -0.38 0.39 16 44 H 0.02 0.64 8.03 -51.93 -0.42 0.23 16 45 H 0.08 2.19 6.33 -51.93 -0.33 1.86 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -37.91 366.94 -10.33 -48.24 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.18 Total: 1.29 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.79 Total: -6.80 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.05 Total: -50.73 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -2.00 Total: -32.83 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Atomic # 16 Polarization: 18.67 SS G_CDS: -0.81 Total: 17.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.91 -10.33 -48.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052502240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.648 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds